RchiOBHm_Chr5g0001941

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000724
Physical Location & Seq
Forward (+)
1104945 .. 1105972
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28332

Sequence Viewer

Length: 735 bp
ATGGCCTTTTACAAAGGAAGCACACAGCCTGGTCCTGCACTCCAGTTGCAAGAAGAGTTAGAATGGTTTGAGATTGTGGAGCAGGTGATTCCACCCCATTATGCGATGCAACTTGCCTGGAACGAAAAGGAACAGAAAAACGAGACCCCCAAACAGTACTTTCGTCGCACACATGGCGAGCTTCTCAAGGAGGCCCAAGATTGGATAAAGCGGACCGCCGAGTCGTGCTCGACGGTGGCAGGACTAATGGCCACCGTCGCTTTCGCCGCCGCCTTCACCGTCCCTGGAGGCAACGACGAGAAAAGCGGCACTCCACTCCTTCTTCACAGCCCTTTCTTCTTAGTCTTCATCATCACCGACGCTTTCTCCCTAGCCAGCTCGCTCACGTCACTCGTCATGTTCCTCTCGATTCTGACGTCACCGTACGAGATCGACGACTTCCGCTACTCTCTCCCTCGGAAGCTTATCCTCGGCTTCACCTTCCTCTTCTTCTCGGTGGCGGTGACCATGCTGGCCTTTGCTTCCACACTGATGCTGACAATTTCGACAAAGAAGAGCCTGACAACAACTTTTATATACTGCGTTGCGTTTCTTCCGGTCACTATGTTCGCGCTGTTGCAGTTCCCTTTGTACGTGGCCTTCAAAACGACTCTCCTGTACTCTGTACAGGCCATCCAAAGCGTTCTTCCGTGGCATCTCATCTCCGTTGGTTTTTCAAAACTCAAAACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

6.9

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 67 - 179 2.5e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
AasI GACNNNNNNGTC 1 cut(s) 220
AatII GACGTC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 73
AccII CGCG 1 cut(s) 611
AciI CCGC 7 cut(s) 211, 216, 267, 270, 306, 442, 500
AcoI YGGCCR 1 cut(s) 249
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 5 cut(s) 158, 425, 632, 659, 666
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 2 cut(s) 643, 717
AjiI CACGTC 1 cut(s) 387
AjnI CCWGG 3 cut(s) 28, 116, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AluBI AGCT 3 cut(s) 181, 378, 463
AluI AGCT 3 cut(s) 181, 378, 463
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 137
AoxI GGCC 6 cut(s) 3, 192, 249, 513, 636, 669
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 3 cut(s) 32, 193, 213
AsuHPI GGTGA 6 cut(s) 97, 268, 346, 411, 469, 514
AvaII GGWCC 2 cut(s) 32, 213
BalI TGGCCA 1 cut(s) 251
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 230
BccI CCATC 1 cut(s) 680
BciT130I CCWGG 3 cut(s) 30, 118, 285
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 3 cut(s) 267, 270, 307
BlsI GCNGC 3 cut(s) 268, 271, 308
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 3 cut(s) 30, 118, 285
Bme18I GGWCC 2 cut(s) 32, 213
BmgBI CACGTC 1 cut(s) 387
BmgT120I GGNCC 3 cut(s) 32, 193, 213
BmrFI CCNGG 3 cut(s) 30, 118, 285
BmsI GCATC 3 cut(s) 96, 522, 703
BpiI GAAGAC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 2 cut(s) 26, 306
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 416
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 4 cut(s) 283, 455, 469, 689
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 3 cut(s) 30, 118, 285
BseDI CCNNGG 4 cut(s) 283, 455, 469, 689
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 611
BshFI GGCC 6 cut(s) 5, 194, 251, 515, 638, 671
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 596
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 6 cut(s) 5, 194, 251, 515, 638, 671
Bso31I GGTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 230
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 1 cut(s) 429
BspACI CCGC 7 cut(s) 211, 216, 267, 270, 306, 442, 500
BspANI GGCC 6 cut(s) 5, 194, 251, 515, 638, 671
BspFNI CGCG 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 73
BspQI GCTCTTC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 4 cut(s) 283, 455, 469, 689
BssMI GATC 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 416
Bst2UI CCWGG 3 cut(s) 30, 118, 285
Bst4CI ACNGT 5 cut(s) 156, 235, 256, 280, 423
Bst6I CTCTTC 3 cut(s) 48, 491, 548
BstACI GRCGYC 1 cut(s) 416
BstAUI TGTACA 1 cut(s) 664
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 4 cut(s) 179, 376, 380, 513
BstDEI CTNAG 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 689
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 1 cut(s) 672
BstFNI CGCG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 1 cut(s) 429
BstMWI GCNNNNNNNGC 3 cut(s) 174, 257, 266
BstNI CCWGG 3 cut(s) 30, 118, 285
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 3 cut(s) 28, 116, 283
BstUI CGCG 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 337
BsuRI GGCC 6 cut(s) 5, 194, 251, 515, 638, 671
BtgI CCRYGG 1 cut(s) 689
BtgZI GCGATG 1 cut(s) 119
BtrI CACGTC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 527
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 4 cut(s) 179, 376, 380, 513
CfoI GCGC 1 cut(s) 613
Cfr13I GGNCC 3 cut(s) 32, 193, 213
CpoI CGGWCCG 1 cut(s) 213
CseI GACGC 1 cut(s) 368
Csp6I GTAC 5 cut(s) 157, 424, 631, 658, 665
CspI CGGWCCG 1 cut(s) 213
CviAII CATG 3 cut(s) 173, 397, 508
CviQI GTAC 5 cut(s) 157, 424, 631, 658, 665
DdeI CTNAG 1 cut(s) 340
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 48, 491, 548
EarI CTCTTC 3 cut(s) 48, 491, 548
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 32, 213
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 3 cut(s) 28, 116, 283
FaeI CATG 3 cut(s) 176, 400, 511
FaiI YATR 7 cut(s) 102, 174, 398, 509, 575, 577, 605
FaqI GGGAC 1 cut(s) 266
FatI CATG 3 cut(s) 172, 396, 507
Fnu4HI GCNGC 3 cut(s) 267, 270, 307
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 3 cut(s) 267, 270, 307
FspBI CTAG 1 cut(s) 371
GlaI GCGC 1 cut(s) 612
GluI GCNGC 3 cut(s) 267, 270, 307
GsuI CTGGAG 2 cut(s) 26, 306
HaeIII GGCC 6 cut(s) 5, 194, 251, 515, 638, 671
HapII CCGG 1 cut(s) 596
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 3 cut(s) 176, 400, 511
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 4 cut(s) 88, 221, 409, 649
HpaII CCGG 1 cut(s) 596
HphI GGTGA 6 cut(s) 97, 268, 346, 411, 469, 514
Hpy188I TCNGA 2 cut(s) 414, 459
Hpy188III TCNNGA 1 cut(s) 406
Hpy99I CGWCG 6 cut(s) 168, 235, 260, 299, 362, 437
HpyAV CCTTC 4 cut(s) 283, 329, 490, 649
HpyCH4III ACNGT 5 cut(s) 156, 235, 256, 280, 423
HpyCH4IV ACGT 3 cut(s) 386, 416, 633
HpyCH4V TGCA 4 cut(s) 38, 49, 109, 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 257, 266
HpyF3I CTNAG 1 cut(s) 340
HpySE526I ACGT 3 cut(s) 386, 416, 633
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 3 cut(s) 176, 400, 511
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 1 cut(s) 429
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 1 cut(s) 79
LweI GCATC 3 cut(s) 96, 522, 703
MaeI CTAG 1 cut(s) 371
MaeII ACGT 3 cut(s) 386, 416, 633
MaeIII GTNAC 4 cut(s) 387, 417, 502, 598
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 9 cut(s) 65, 314, 328, 337, 478, 481, 565, 584, 677
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 2 cut(s) 540, 730
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 2 cut(s) 230, 643
MnlI CCTC 6 cut(s) 184, 281, 413, 465, 479, 494
Mox20I TGGCCA 1 cut(s) 251
MscI TGGCCA 1 cut(s) 251
MseI TTAA 1 cut(s) 733
MslI CAYNNNNRTG 1 cut(s) 530
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 1 cut(s) 596
MspR9I CCNGG 3 cut(s) 30, 118, 285
MvaI CCWGG 3 cut(s) 30, 118, 285
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 3 cut(s) 174, 257, 266
NdeII GATC 1 cut(s) 429
NlaIII CATG 3 cut(s) 176, 400, 511
NmeAIII GCCGAG 2 cut(s) 244, 450
NmuCI GTSAC 4 cut(s) 387, 417, 502, 598
PaqCI CACCTGC 1 cut(s) 73
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 2 cut(s) 413, 432
PfeI GAWTC 2 cut(s) 88, 409
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 3 cut(s) 268, 271, 308
PleI GAGTC 2 cut(s) 229, 643
PpsI GAGTC 2 cut(s) 229, 643
Ppu21I YACGTR 1 cut(s) 634
Psp6I CCWGG 3 cut(s) 28, 116, 283
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 3 cut(s) 28, 116, 283
PspLI CGTACG 1 cut(s) 423
PspPI GGNCC 3 cut(s) 32, 193, 213
RsaI GTAC 5 cut(s) 158, 425, 632, 659, 666
RsaNI GTAC 5 cut(s) 157, 424, 631, 658, 665
RseI CAYNNNNRTG 1 cut(s) 530
Rsr2I CGGWCCG 1 cut(s) 213
RsrII CGGWCCG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 733
SatI GCNGC 3 cut(s) 267, 270, 307
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 3 cut(s) 32, 193, 213
ScaI AGTACT 1 cut(s) 158
SchI GAGTC 2 cut(s) 230, 643
ScrFI CCNGG 3 cut(s) 30, 118, 285
SduI GDGCHC 1 cut(s) 230
SetI ASST 8 cut(s) 87, 183, 380, 389, 419, 465, 482, 636
SfaNI GCATC 3 cut(s) 96, 522, 703
SinI GGWCC 2 cut(s) 32, 213
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 540, 730
SsiI CCGC 7 cut(s) 211, 216, 267, 270, 306, 442, 500
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 3 cut(s) 28, 116, 283
TaaI ACNGT 5 cut(s) 156, 235, 256, 280, 423
TaiI ACGT 3 cut(s) 389, 419, 636
TaqI TCGA 4 cut(s) 230, 407, 432, 545
TasI AATT 2 cut(s) 540, 730
TatI WGTACW 3 cut(s) 156, 657, 664
TauI GCSGC 3 cut(s) 269, 272, 309
TfiI GAWTC 2 cut(s) 88, 409
Tru1I TTAA 1 cut(s) 733
Tru9I TTAA 1 cut(s) 733
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 4 cut(s) 387, 417, 502, 598
Tsp45I GTSAC 4 cut(s) 387, 417, 502, 598
TspDTI ATGAA 1 cut(s) 337
TspGWI ACGGA 2 cut(s) 678, 694
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 2 cut(s) 32, 213
XspI CTAG 1 cut(s) 371
ZraI GACGTC 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.