RchiOBHm_Chr5g0001901

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000724
Physical Location & Seq
Reverse (-)
1075080 .. 1076561
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28328

Sequence Viewer

Length: 1311 bp
ATGAGGAGCATCTACGACGAAAAGAAGAGGCATGGATTGGCTTTAGAACTAGCCACGCTTCTAATTGCAGCAGACTTTTCATGGGACATCACACGACTAGCATTAAATGAAAGTATGATGCAGACTGCTGTGGGACTCCCATTCCCAGATTCCGAAGACTCAGGTGGTTTCAGTATCACTAGCACTGAAGACCCCTCCGCTCCATTCCTGGAAAAGAGTAATCCACCAGCTATCCCATTGCACATTGCAACAGAGCATGGAATATTAGAAATTGTGAAGGAGACTCTTAGAGTCCACCCTGCGGCATACGAGTATAGAAATACCAAGGGACAAAACATACTGCACCTGTCCATTATGCACCGTCAGCGGGACATCTTTGATCTTGTAATGAAGAAGGAGACACCTAAGTCGAGGTTGCAACGACAACTCGATATTAATGACTTCACAGTATTGCACCAAGTTGGCAACATAGAGCATTACAATGGAGGTACCCAGCCTGGTCCTGCACTCCAATTGCAAGAAGAGCTAGAGTGGTTCGAGAAGGTGGAGGGGTTAATCCCACTACATTATGAAAAATTCAGTGCTTGTGAGGCAGGCAAAGACACCACCCTACAGTCCTTTCATAAAAGATATGTAGAGATTCTCAAGGACTTGTCTGAGAACATTGAAGTGGATAAGATAATAACACCCGATTCTCACAAGGAAGAAAAGAAAAAGGAGACCCCCATAGAGTACTTTCGTCGCACACATGATCCGCTTCTCCAGAGCGCACAAGAATGGCTGAAGCGGACCTCCGAGTCGTGCTCGACGGTGGCCGGACTAATGGCCACCGTCGCCTTCGCAGCCGCCTTCACCCTCCCCGGAGGCAACGACGAGAACAGCGGCACTCCACGCCTTCTTCACAGCCCTTTCTTCTTAGTCTTCATCATTACCGACGCTCTCTCCCTAGCCAGCTCGCTGACATCACTCGTCATGTTCCTCTCGATCCTGACATCACCGTTCGAGATGGACGACTTCCGCCACTCTCTCCCTCGGAAGCTGATCCTCGGCTTCACCTTCCTCTTCATCTCGGTGGCGGTGACCATGCTGGCCTTTGCGTCCACACTGATGCTGACAATTCCGATGAAGAAGAGAGTGACCAAAAGTTTTGTGTACTGCGTTGCGTTTCTTCCCGTCACCATGTTTGCACTGTTGCAATTCCCGTTGTTGTTGGCCTTCAAAAAGAGTCTCAAGTACCCAGTCATGGCCATGAAAAGAGTATGGCGGCTTCTTATCTCTGCTTCTATCTTGAAAAGCGACAAGACCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

436

Amino Acids

49.34

Weight (kDa)

6.72

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 259 - 371 1.3e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 406, 796
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AccBSI CCGCTC 1 cut(s) 200
AclWI GGATC 3 cut(s) 746, 979, 1036
AcoI YGGCCR 3 cut(s) 813, 825, 1245
AcsI RAATTY 1 cut(s) 575
AcuI CTGAAG 2 cut(s) 207, 803
AfaI GTAC 4 cut(s) 490, 734, 1154, 1235
AfiI CCNNNNNNNGG 3 cut(s) 301, 367, 1243
AgsI TTSAA 3 cut(s) 668, 1219, 1291
AjnI CCWGG 2 cut(s) 207, 496
AluBI AGCT 4 cut(s) 230, 526, 954, 1039
AluI AGCT 4 cut(s) 230, 526, 954, 1039
Alw21I GWGCWC 1 cut(s) 806
Alw26I GTCTC 4 cut(s) 275, 392, 713, 1232
AlwI GGATC 3 cut(s) 746, 979, 1036
AoxI GGCC 5 cut(s) 813, 825, 1089, 1212, 1245
ApeKI GCWGC 2 cut(s) 68, 842
ApoI RAATTY 1 cut(s) 575
AseI ATTAAT 1 cut(s) 435
Asp718I GGTACC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 2 cut(s) 500, 789
AsuC2I CCSGG 1 cut(s) 861
AsuHPI GGTGA 5 cut(s) 844, 987, 1045, 1090, 1168
AvaII GGWCC 2 cut(s) 500, 789
BalI TGGCCA 2 cut(s) 827, 1247
BanI GGYRCC 1 cut(s) 488
BarI GAAGNNNNNNTAC 2 cut(s) 1251, 1283
BbsI GAAGAC 3 cut(s) 162, 195, 913
Bbv12I GWGCWC 1 cut(s) 806
BbvI GCAGC 2 cut(s) 80, 854
BccI CCATC 1 cut(s) 1000
BciT130I CCWGG 2 cut(s) 209, 498
BcnI CCSGG 1 cut(s) 861
BcoDI GTCTC 4 cut(s) 275, 392, 713, 1232
BfaI CTAG 5 cut(s) 50, 98, 180, 527, 947
BfmI CTRYAG 1 cut(s) 611
BisI GCNGC 6 cut(s) 69, 303, 843, 846, 883, 1265
BlsI GCNGC 6 cut(s) 70, 304, 844, 847, 884, 1266
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 3 cut(s) 209, 498, 861
Bme18I GGWCC 2 cut(s) 500, 789
BmgT120I GGNCC 2 cut(s) 500, 789
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 3 cut(s) 209, 498, 861
BmrI ACTGGG 1 cut(s) 1232
BmsI GCATC 3 cut(s) 18, 108, 1098
BmuI ACTGGG 1 cut(s) 1232
BpiI GAAGAC 3 cut(s) 162, 195, 913
BplI GAGNNNNNCTC 2 cut(s) 788, 820
BpmI CTGGAG 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 629, 1214
BpuMI CCSGG 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 4 cut(s) 324, 859, 1031, 1045
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 367, 1243
Bse1I ACTGG 1 cut(s) 1238
Bse3DI GCAATG 2 cut(s) 236, 243
BseBI CCWGG 2 cut(s) 209, 498
BseDI CCNNGG 4 cut(s) 324, 859, 1031, 1045
BseLI CCNNNNNNNGG 3 cut(s) 301, 367, 1243
BseMI GCAATG 2 cut(s) 236, 243
BseMII CTCAG 2 cut(s) 174, 648
BseNI ACTGG 1 cut(s) 1238
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 2 cut(s) 80, 854
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 2 cut(s) 326, 489
BshFI GGCC 5 cut(s) 815, 827, 1091, 1214, 1247
BshNI GGYRCC 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 806
BsiSI CCGG 2 cut(s) 816, 861
BslFI GGGAC 4 cut(s) 98, 147, 342, 383
BslI CCNNNNNNNGG 3 cut(s) 301, 367, 1243
BsmAI GTCTC 4 cut(s) 275, 392, 713, 1232
BsmFI GGGAC 4 cut(s) 98, 147, 342, 383
BsnI GGCC 5 cut(s) 815, 827, 1091, 1214, 1247
Bso31I GGTCTC 1 cut(s) 713
Bsp1286I GDGCHC 1 cut(s) 806
Bsp143I GATC 4 cut(s) 379, 751, 984, 1041
BspANI GGCC 5 cut(s) 815, 827, 1091, 1214, 1247
BspCNI CTCAG 2 cut(s) 173, 649
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 3 cut(s) 746, 979, 1036
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 713
BsrBI CCGCTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 236, 243
BsrI ACTGG 1 cut(s) 1238
BssECI CCNNGG 4 cut(s) 324, 859, 1031, 1045
BssMI GATC 4 cut(s) 379, 751, 984, 1041
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 2 cut(s) 209, 498
Bst4CI ACNGT 7 cut(s) 362, 448, 615, 811, 832, 999, 1191
Bst6I CTCTTC 4 cut(s) 20, 516, 1067, 1124
BstC8I GCNNGC 4 cut(s) 595, 952, 956, 1089
BstDEI CTNAG 5 cut(s) 160, 287, 405, 657, 916
BstEII GGTNACC 1 cut(s) 1078
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 4 cut(s) 382, 754, 987, 1044
BstMAI GTCTC 4 cut(s) 275, 392, 713, 1232
BstMBI GATC 4 cut(s) 379, 751, 984, 1041
BstMWI GCNNNNNNNGC 6 cut(s) 364, 523, 590, 833, 842, 891
BstNI CCWGG 2 cut(s) 209, 498
BstPI GGTNACC 1 cut(s) 1078
BstSCI CCNGG 3 cut(s) 207, 496, 859
BstSFI CTRYAG 1 cut(s) 611
BstV1I GCAGC 2 cut(s) 80, 854
BstV2I GAAGAC 3 cut(s) 162, 195, 913
BsuRI GGCC 5 cut(s) 815, 827, 1091, 1214, 1247
BtsIMutI CAGTG 4 cut(s) 183, 586, 1103, 1187
Cac8I GCNNGC 4 cut(s) 595, 952, 956, 1089
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 500, 789
CseI GACGC 2 cut(s) 944, 1086
Csp6I GTAC 4 cut(s) 489, 733, 1153, 1234
CviAII CATG 9 cut(s) 32, 81, 257, 749, 973, 1084, 1180, 1243, 1249
CviQI GTAC 4 cut(s) 489, 733, 1153, 1234
DdeI CTNAG 5 cut(s) 160, 287, 405, 657, 916
DpnI GATC 4 cut(s) 381, 753, 986, 1043
DpnII GATC 4 cut(s) 379, 751, 984, 1041
DrdI GACNNNNNNGTC 2 cut(s) 406, 796
DseDI GACNNNNNNGTC 2 cut(s) 406, 796
EaeI YGGCCR 3 cut(s) 813, 825, 1245
Eam1104I CTCTTC 4 cut(s) 20, 516, 1067, 1124
EarI CTCTTC 4 cut(s) 20, 516, 1067, 1124
EciI GGCGGA 1 cut(s) 1007
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 500, 789
Eco57I CTGAAG 2 cut(s) 207, 803
Eco91I GGTNACC 1 cut(s) 1078
EcoO65I GGTNACC 1 cut(s) 1078
EcoRII CCWGG 2 cut(s) 207, 496
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 9 cut(s) 35, 84, 260, 752, 976, 1087, 1183, 1246, 1252
FaqI GGGAC 4 cut(s) 98, 147, 342, 383
FatI CATG 9 cut(s) 31, 80, 256, 748, 972, 1083, 1179, 1242, 1248
FauI CCCGC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 69, 303, 843, 846, 883, 1265
Fsp4HI GCNGC 6 cut(s) 69, 303, 843, 846, 883, 1265
FspBI CTAG 5 cut(s) 50, 98, 180, 527, 947
GlaI GCGC 1 cut(s) 769
GluI GCNGC 6 cut(s) 69, 303, 843, 846, 883, 1265
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 746
HaeIII GGCC 5 cut(s) 815, 827, 1091, 1214, 1247
HapII CCGG 2 cut(s) 816, 861
HgaI GACGC 2 cut(s) 944, 1086
HhaI GCGC 1 cut(s) 770
Hin1II CATG 9 cut(s) 35, 84, 260, 752, 976, 1087, 1183, 1246, 1252
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HinfI GANTC 9 cut(s) 135, 149, 158, 283, 291, 640, 692, 797, 1225
HpaII CCGG 2 cut(s) 816, 861
HphI GGTGA 5 cut(s) 844, 987, 1045, 1090, 1168
Hpy166II GTNNAC 3 cut(s) 295, 1101, 1153
Hpy188I TCNGA 5 cut(s) 154, 658, 796, 1035, 1122
Hpy188III TCNNGA 6 cut(s) 538, 763, 982, 988, 1003, 1288
Hpy8I GTNNAC 3 cut(s) 295, 1101, 1153
Hpy99I CGWCG 6 cut(s) 20, 744, 811, 836, 875, 938
HpyAV CCTTC 8 cut(s) 271, 388, 535, 847, 859, 905, 1066, 1225
HpyCH4III ACNGT 7 cut(s) 362, 448, 615, 811, 832, 999, 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 364, 523, 590, 833, 842, 891
HpyF3I CTNAG 5 cut(s) 160, 287, 405, 657, 916
Hsp92II CATG 9 cut(s) 35, 84, 260, 752, 976, 1087, 1183, 1246, 1252
HspAI GCGC 1 cut(s) 768
KpnI GGTACC 1 cut(s) 492
Kzo9I GATC 4 cut(s) 379, 751, 984, 1041
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 2 cut(s) 6, 205
Lsp1109I GCAGC 2 cut(s) 80, 854
LweI GCATC 3 cut(s) 18, 108, 1098
MaeI CTAG 5 cut(s) 50, 98, 180, 527, 947
MaeIII GTNAC 3 cut(s) 1078, 1135, 1174
MalI GATC 4 cut(s) 381, 753, 986, 1043
MbiI CCGCTC 1 cut(s) 200
MboI GATC 4 cut(s) 379, 751, 984, 1041
MfeI CAATTG 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 806
MlsI TGGCCA 2 cut(s) 827, 1247
MluCI AATT 6 cut(s) 63, 270, 512, 575, 1116, 1196
MluNI TGGCCA 2 cut(s) 827, 1247
MlyI GAGTC 6 cut(s) 129, 152, 277, 300, 806, 1234
Mox20I TGGCCA 2 cut(s) 827, 1247
MscI TGGCCA 2 cut(s) 827, 1247
MseI TTAA 3 cut(s) 104, 435, 554
MslI CAYNNNNRTG 6 cut(s) 480, 668, 775, 1070, 1106, 1247
Msp20I TGGCCA 2 cut(s) 827, 1247
MspA1I CMGCKG 2 cut(s) 367, 882
MspI CCGG 2 cut(s) 816, 861
MspR9I CCNGG 3 cut(s) 209, 498, 861
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 2 cut(s) 209, 498
MwoI GCNNNNNNNGC 6 cut(s) 364, 523, 590, 833, 842, 891
NciI CCSGG 1 cut(s) 861
NdeII GATC 4 cut(s) 379, 751, 984, 1041
NlaIII CATG 9 cut(s) 35, 84, 260, 752, 976, 1087, 1183, 1246, 1252
NlaIV GGNNCC 1 cut(s) 490
NmeAIII GCCGAG 1 cut(s) 1026
NmuCI GTSAC 3 cut(s) 1078, 1135, 1174
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 1008
PfeI GAWTC 3 cut(s) 149, 640, 692
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 6 cut(s) 70, 304, 844, 847, 884, 1266
PleI GAGTC 6 cut(s) 129, 152, 277, 299, 805, 1233
PpsI GAGTC 6 cut(s) 129, 152, 277, 299, 805, 1233
PshBI ATTAAT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 207, 496
PspEI GGTNACC 1 cut(s) 1078
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 2 cut(s) 207, 496
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 2 cut(s) 500, 789
RsaI GTAC 4 cut(s) 490, 734, 1154, 1235
RsaNI GTAC 4 cut(s) 489, 733, 1153, 1234
RseI CAYNNNNRTG 6 cut(s) 480, 668, 775, 1070, 1106, 1247
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 3 cut(s) 104, 435, 554
SatI GCNGC 6 cut(s) 69, 303, 843, 846, 883, 1265
Sau3AI GATC 4 cut(s) 379, 751, 984, 1041
Sau96I GGNCC 2 cut(s) 500, 789
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 6 cut(s) 129, 152, 277, 300, 806, 1234
ScrFI CCNGG 3 cut(s) 209, 498, 861
SduI GDGCHC 1 cut(s) 806
SfaNI GCATC 3 cut(s) 18, 108, 1098
SfcI CTRYAG 1 cut(s) 611
SinI GGWCC 2 cut(s) 500, 789
SmiMI CAYNNNNRTG 6 cut(s) 480, 668, 775, 1070, 1106, 1247
SmlI CTYRAG 2 cut(s) 644, 1229
SmoI CTYRAG 2 cut(s) 644, 1229
Sse9I AATT 6 cut(s) 63, 270, 512, 575, 1116, 1196
SspI AATATT 1 cut(s) 264
SspMI CTAG 5 cut(s) 50, 98, 180, 527, 947
StyD4I CCNGG 3 cut(s) 207, 496, 859
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 7 cut(s) 362, 448, 615, 811, 832, 999, 1191
TaqI TCGA 6 cut(s) 410, 429, 537, 806, 983, 1002
TasI AATT 6 cut(s) 63, 270, 512, 575, 1116, 1196
TatI WGTACW 2 cut(s) 732, 1152
TauI GCSGC 4 cut(s) 305, 848, 885, 1267
TfiI GAWTC 3 cut(s) 149, 640, 692
Tru1I TTAA 3 cut(s) 104, 435, 554
Tru9I TTAA 3 cut(s) 104, 435, 554
TscAI CASTG 4 cut(s) 190, 586, 1110, 1194
TseFI GTSAC 3 cut(s) 1078, 1135, 1174
TseI GCWGC 2 cut(s) 68, 842
Tsp45I GTSAC 3 cut(s) 1078, 1135, 1174
TspDTI ATGAA 9 cut(s) 69, 123, 404, 585, 611, 913, 1054, 1139, 1265
TspRI CASTG 4 cut(s) 190, 586, 1110, 1194
VpaK11BI GGWCC 2 cut(s) 500, 789
VspI ATTAAT 1 cut(s) 435
XapI RAATTY 1 cut(s) 575
XspI CTAG 5 cut(s) 50, 98, 180, 527, 947
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.