pycom17g07280

Ankyrin repeat-containing protein At3g12360-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
5228192 .. 5229145
954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07280.2

Sequence Viewer

Length: 897 bp
ATGTCAAGGCTGAATAAGAGGATAGACCACAATGGAAACACCATATTGCACCAGGCTGCGGATAGAACTTACTACTCTATAGGAGTGTCTCAGAAAGTAATAGGCCCTGCCATGGAATTGCAAAAAGAGCTGCTCTGGAAGCAGTCTATCGACCTTATAAATACTTATGTTGTTAGACAAATATTTCTATTACAAAATCTATACGTTGACATGATAAATGTGTACGTGTGTTTGTGTCAGCGTATAAAAGAGATGCTACCGCCTCATTACATCATGCATCACATCGACAAGGATCAGACAGCGGAGGAGTTGTTCAACGCTGGGCATGACAAGCTTCTGAAGTCCGCACGAGAATGGGTAAAAGAAACGGCTCGGTCATGCTCAACCGTGGCGGTGCTAGTGGCCACTGTGGTCTTTGCAGCCGCCTACGCCATTCCTGGGTGTAATAAGCTAAGTGGTCGTCCTGTTTTCGAGAACAATCCTCTCTTTTTGCTCTTTACCAGCATGGACGTTGTGGCCATCGCCTGCTCATTATCTTCTGTGGCATTCTTTCTCTCGGTCCTCTCCTCCCCTCTCGAGTACCCAAATTTCGTTAAAAGCATTCCTCGCAGGGTCAAGATAGGATTCATCTTTCTCTTCGTGTCCATGGCAACCACCATGCTCGCCTTTGCTGCCACTATTTTGCTCTTGATTCACATCGAGAAAAAATGGACCAAGTCTCTACTTTACCCTATTGCTTTTTTCCCGGTCCTTCTATTCGGCCTGCTTCAGTTTCCCATGTATCAATTTGTCAAAATCATGTTTCTGAAAATGGATGCCTGGTTTTTCAAACCCTTATTCCGCTTCTTTGGCTTTCGCAAGAAGAAAATAATTTGGAGGAAGATTAATGCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

299

Amino Acids

34.4

Weight (kDa)

9.7

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000724)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 891
AciI CCGC 7 cut(s) 59, 260, 302, 345, 392, 423, 841
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 2 cut(s) 402, 516
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 2 cut(s) 359, 752
AfaI GTAC 2 cut(s) 224, 581
AfiI CCNNNNNNNGG 3 cut(s) 58, 112, 438
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 316, 829
AjnI CCWGG 3 cut(s) 51, 436, 818
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 3 cut(s) 130, 334, 451
AluI AGCT 3 cut(s) 130, 334, 451
Alw26I GTCTC 2 cut(s) 93, 723
AlwI GGATC 1 cut(s) 300
Ama87I CYCGRG 1 cut(s) 575
AoxI GGCC 4 cut(s) 103, 402, 516, 760
ApeKI GCWGC 4 cut(s) 56, 130, 419, 671
ApoI RAATTY 1 cut(s) 586
AseI ATTAAT 1 cut(s) 885
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 4 cut(s) 104, 559, 711, 748
AsuC2I CCSGG 1 cut(s) 746
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 3 cut(s) 559, 711, 748
BalI TGGCCA 2 cut(s) 404, 518
BauI CACGAG 1 cut(s) 348
BbvI GCAGC 4 cut(s) 43, 117, 431, 658
BccI CCATC 1 cut(s) 527
BceAI ACGGC 1 cut(s) 384
BciT130I CCWGG 3 cut(s) 53, 438, 820
BcnI CCSGG 1 cut(s) 746
BcoDI GTCTC 2 cut(s) 93, 723
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 5 cut(s) 57, 131, 420, 423, 672
BlsI GCNGC 5 cut(s) 58, 132, 421, 424, 673
Bme1390I CCNGG 4 cut(s) 53, 438, 746, 820
Bme18I GGWCC 3 cut(s) 559, 711, 748
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 4 cut(s) 104, 559, 711, 748
BmrFI CCNGG 4 cut(s) 53, 438, 746, 820
BmsI GCATC 3 cut(s) 243, 286, 805
BpuMI CCSGG 1 cut(s) 746
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 111, 387, 437, 645
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 112, 438
Bse8I GATNNNNATC 1 cut(s) 695
BseBI CCWGG 3 cut(s) 53, 438, 820
BseDI CCNNGG 4 cut(s) 111, 387, 437, 645
BseGI GGATG 1 cut(s) 820
BseJI GATNNNNATC 1 cut(s) 695
BseLI CCNNNNNNNGG 3 cut(s) 58, 112, 438
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 320, 556
BseXI GCAGC 4 cut(s) 43, 117, 431, 658
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 4 cut(s) 105, 404, 518, 762
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 1 cut(s) 746
BslI CCNNNNNNNGG 3 cut(s) 58, 112, 438
BsmAI GTCTC 2 cut(s) 93, 723
BsmI GAATGC 2 cut(s) 545, 600
BsnI GGCC 4 cut(s) 105, 404, 518, 762
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 2 cut(s) 111, 645
BspACI CCGC 7 cut(s) 59, 260, 302, 345, 392, 423, 841
BspANI GGCC 4 cut(s) 105, 404, 518, 762
BspCNI CTCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 111, 387, 437, 645
BssMI GATC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 2 cut(s) 111, 645
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 53, 438, 820
Bst4CI ACNGT 2 cut(s) 388, 409
Bst6I CTCTTC 1 cut(s) 641
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 526, 663, 764
BstDEI CTNAG 2 cut(s) 90, 452
BstDSI CCRYGG 3 cut(s) 111, 387, 645
BstF5I GGATG 1 cut(s) 820
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 93, 723
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 7 cut(s) 127, 139, 331, 428, 606, 671, 849
BstNI CCWGG 3 cut(s) 53, 438, 820
BstSCI CCNGG 4 cut(s) 51, 436, 744, 818
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 4 cut(s) 43, 117, 431, 658
BsuRI GGCC 4 cut(s) 105, 404, 518, 762
BtgI CCRYGG 3 cut(s) 111, 387, 645
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 526, 663, 764
CfoI GCGC 1 cut(s) 892
Cfr13I GGNCC 4 cut(s) 104, 559, 711, 748
Csp6I GTAC 2 cut(s) 223, 580
CviQI GTAC 2 cut(s) 223, 580
DdeI CTNAG 2 cut(s) 90, 452
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 402, 516
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 111, 645
Eco47I GGWCC 3 cut(s) 559, 711, 748
Eco57I CTGAAG 2 cut(s) 359, 752
Eco88I CYCGRG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 3 cut(s) 51, 436, 818
EcoT14I CCWWGG 2 cut(s) 111, 645
EcoT22I ATGCAT 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 111, 645
Fnu4HI GCNGC 5 cut(s) 57, 131, 420, 423, 672
FokI GGATG 1 cut(s) 827
Fsp4HI GCNGC 5 cut(s) 57, 131, 420, 423, 672
FspAI RTGCGCAY 1 cut(s) 891
FspBI CTAG 1 cut(s) 398
FspI TGCGCA 1 cut(s) 891
GlaI GCGC 1 cut(s) 891
GluI GCNGC 5 cut(s) 57, 131, 420, 423, 672
GsaI CCCAGC 1 cut(s) 324
HaeIII GGCC 4 cut(s) 105, 404, 518, 762
HapII CCGG 1 cut(s) 746
HhaI GCGC 1 cut(s) 892
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 624, 691
HpaII CCGG 1 cut(s) 746
Hpy166II GTNNAC 2 cut(s) 208, 223
Hpy188I TCNGA 4 cut(s) 93, 297, 339, 807
Hpy188III TCNNGA 6 cut(s) 136, 472, 575, 616, 688, 700
Hpy8I GTNNAC 2 cut(s) 208, 223
HpyAV CCTTC 1 cut(s) 761
HpyCH4III ACNGT 2 cut(s) 388, 409
HpyCH4IV ACGT 3 cut(s) 204, 225, 510
HpyCH4V TGCA 4 cut(s) 49, 121, 277, 419
HpyF10VI GCNNNNNNNGC 7 cut(s) 127, 139, 331, 428, 606, 671, 849
HpyF3I CTNAG 2 cut(s) 90, 452
HpySE526I ACGT 3 cut(s) 204, 225, 510
HspAI GCGC 1 cut(s) 890
Kzo9I GATC 1 cut(s) 292
Lsp1109I GCAGC 4 cut(s) 43, 117, 431, 658
LweI GCATC 3 cut(s) 243, 286, 805
MaeI CTAG 1 cut(s) 398
MaeII ACGT 3 cut(s) 204, 225, 510
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 4 cut(s) 528, 628, 874, 892
MlsI TGGCCA 2 cut(s) 404, 518
MluCI AATT 4 cut(s) 116, 586, 785, 870
MluNI TGGCCA 2 cut(s) 404, 518
MnlI CCTC 9 cut(s) 12, 273, 298, 492, 572, 577, 582, 615, 870
Mox20I TGGCCA 2 cut(s) 404, 518
Mph1103I ATGCAT 1 cut(s) 279
MscI TGGCCA 2 cut(s) 404, 518
MseI TTAA 2 cut(s) 594, 885
MslI CAYNNNNRTG 1 cut(s) 352
Msp20I TGGCCA 2 cut(s) 404, 518
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 746
MspR9I CCNGG 4 cut(s) 53, 438, 746, 820
Mva1269I GAATGC 2 cut(s) 545, 600
MvaI CCWGG 3 cut(s) 53, 438, 820
MwoI GCNNNNNNNGC 7 cut(s) 127, 139, 331, 428, 606, 671, 849
NciI CCSGG 1 cut(s) 746
NcoI CCATGG 2 cut(s) 111, 645
NdeII GATC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 891
NsiI ATGCAT 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 575
PctI GAATGC 2 cut(s) 545, 600
PfeI GAWTC 2 cut(s) 624, 691
PflFI GACNNNGTC 1 cut(s) 715
PkrI GCNGC 5 cut(s) 58, 132, 421, 424, 673
Ppu21I YACGTR 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 885
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 51, 436, 818
PspFI CCCAGC 1 cut(s) 320
PspGI CCWGG 3 cut(s) 51, 436, 818
PspPI GGNCC 4 cut(s) 104, 559, 711, 748
PsyI GACNNNGTC 1 cut(s) 715
RsaI GTAC 2 cut(s) 224, 581
RsaNI GTAC 2 cut(s) 223, 580
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 2 cut(s) 594, 885
SatI GCNGC 5 cut(s) 57, 131, 420, 423, 672
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 4 cut(s) 104, 559, 711, 748
ScrFI CCNGG 4 cut(s) 53, 438, 746, 820
SetI ASST 7 cut(s) 132, 156, 207, 228, 336, 453, 513
SfaNI GCATC 3 cut(s) 243, 286, 805
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 575
SinI GGWCC 3 cut(s) 559, 711, 748
SlaI CTCGAG 1 cut(s) 575
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 575
SmoI CTYRAG 1 cut(s) 575
Sse9I AATT 4 cut(s) 116, 586, 785, 870
SsiI CCGC 7 cut(s) 59, 260, 302, 345, 392, 423, 841
SspI AATATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 398
StyD4I CCNGG 4 cut(s) 51, 436, 744, 818
StyI CCWWGG 2 cut(s) 111, 645
TaaI ACNGT 2 cut(s) 388, 409
TaiI ACGT 3 cut(s) 207, 228, 513
TaqI TCGA 5 cut(s) 150, 285, 471, 576, 699
TaqII GACCGA 2 cut(s) 363, 547
TasI AATT 4 cut(s) 116, 586, 785, 870
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 2 cut(s) 624, 691
Tru1I TTAA 2 cut(s) 594, 885
Tru9I TTAA 2 cut(s) 594, 885
TscAI CASTG 1 cut(s) 412
TseI GCWGC 4 cut(s) 56, 130, 419, 671
TspDTI ATGAA 1 cut(s) 616
TspRI CASTG 1 cut(s) 412
Tth111I GACNNNGTC 1 cut(s) 715
VpaK11BI GGWCC 3 cut(s) 559, 711, 748
VspI ATTAAT 1 cut(s) 885
XapI RAATTY 1 cut(s) 586
XhoI CTCGAG 1 cut(s) 575
XspI CTAG 1 cut(s) 398
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.