Rorug04G0393800

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000724
Physical Location & Seq
Reverse (-)
56029116 .. 56032970
3855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0393800.1

Sequence Viewer

Length: 3069 bp
ATGGAAGAGACAGAAGAGTCCAATGGTAACAAGAAATGCAACACCAAAATCATAAGGGGCAGAACCAACAACCCACCTCAGAAGCACCATCACCATCACCATCACCATCACCATCACCAGCTAATACAATACTCAAATCAGTTTGGGTTCTTCAACCAGAACCAGTACTATCAGAGATACTACTATCCAGCTCTTCTTCCCCTCCCTCCTCTTATACCTCTGCCTCTGGCTTTAACTCCACCCTTGCCTCAGAACCACAGCTTCAGAACAAAAACCCATTTGCAGAAACCTTCATGCAAGCACAACAACTCTCCTTTTGCTGCTTCCTCAGAAACCCAAGTGCCCAAAGTCTCGATTTCACCAGAAGCTTCAAAAGGGTTTCAAAAGCAAACCAATTTGCCCCTTAAAGGAGAAAATGGAAGGAAATTCACAAGTGCAAGAACAGGGAAAGCAATAGTGACAGCAAAGAGGCCAGACTCTGGTGGGGTGGAAGGGACTCCTATTTCTCTCTTAGCTAACCATTTCCTTGTCCAATTCAATTCATCGGAGCGAATTTTTCACTACAATGTTGAAATCTCTCCTAGTCCCTCCAAGGACATTTCTCGAATGATCAAGCAAAAACTGGTGGAGGATAACTCATCTTTGCTCTGTGGTGCTAGTCCGGCTTATGATGGCCGCAAGAATCTTTACAGCTCAATCGAATTCCAACATGATAAGCTTGAAATGTATGTAAGCCTCCCCATCCCTACAACCAAGCCAACCTTGCCATGTGGGGAATTTGGCGACTTTCAAGAGAAGGATCATCAAATACTTAAACTTTTTCGTGTAAGCATCAAACTGGTTTCAAAGTTTGATGGAAAGGAATTGAGTAGCTACTTGAGCAAGGATGGAGATGAGTGGAAACCTATCCCTCAGGATTATCTTCATGCCTTGGATGTCGTTTTGAGAGAGAGTCCATTGGAGAAGTGTGTGCCTGTGGGAAGATCACTTTATTCCAGTTCAATGGGAGGAACTAAAGACATTGGAGGAGGAGCTGTAGGATATAGAGGGTTCTTTCAGAGCCTTAGACCAACCCAACAAGGACTAGCTCTCAATGTTGATTTCTCCGTGACAGCTTTCCACGAAAGCATTGGAATGATCCCATACTTGCAGAAGCGTCTCGAGTTTCTTCGAGACCTTCCTCAGAGGAAGACAAGGGGTTTAAGTAGTGAAGAAAGGAAAGAAGTGGAGAAGGCATTGAAGAACATCAGGGTCTTTGTTTGCCATAGAGAAACAGTTCAGAGATACCGAGTTTTTGGCTTAACTGAGGAAGCCACTGAGAATCTTTGGTTTCCAGACAGGGATGGGAAGAATTTGAGGCTGCTGACTTACTTCAAGGATCACTACAACTATGATATACAGTTCAGGAATTTGCCATGTTTGCAGATTAGTAGGAGTAAACCATGTTATCTTCCTATGGAGCTATGTATGATCTGTGAAGGCCAGAAATTCCTTGGGAAGCTTTCAGATGATCAGACTGCAAGGATACTTAAGATGGGCTGCCAAGGACCGAAAGAACGAAAATCCATCATAGATGGAGTCATGAGAGGACCTGTTGGGCCAATAAGTGGCATTCAGGAAAGGGAATTCAAACTCCGTGTTTCTAGAGAAATGACACGATTAAATGGAAGAATTCTTCAGCCTCCAAAGCTAAAGCTTGGTGATGGTGGCCATGTAACAGACCTCATTCCTTCCCGTCATGATCGGCAGTGGAATCTTCTGGACAGCCATGTGTTTGAAGGAACTTGCATTGAGAGGTGGGCATTGATTAGTTTTGGTGGCACTCCCGAACAGAAGCACTGCATTCCCAAATTCATACACCAGCTATCTCAAAGATGTGAACAACTAGGCATCTTTCTTAACAAAAACACAATTGTTAGCCCCCAATTCGAACCATCCCAAGTGCTTAACAATGTATCTCTTTTAGAATCTAAGATTAAGAAAATCCAAAGAGCTGCATCAAACAATCTCCAGCTGCTTATCTGTGTAATGGAAAGAAAACACAAAGGGTATGCAGACCTGAAGCGAATTGCGGATACAGGCGTTGGTGTTCTAACACAATGCTGCTTGTACTCAAACCTTTGCAGATTGAGTTCACAGTTTTTGGCTAACTTGGCTCTCAAGATCAATGCCAAAGTTGGAGGATGCACAGTTTCTTTGTACAACTCTTTGCCATCTCAAATCCCCCGGCTGCTTCAGAGTGATGAGCCAGTCATCTTTATGGGTGCTGATGTTACTCATCCTCACCCACTCGATGATTTCAGCCCTTCTGTTGCTGCTGTGGTTGGTAGCATGAATTGGCCTGCAGCAAACAAGTATGTTTCAAGAATGAGGTCACAAACACATAGGCAAGAAATCATTGAGGATCTTGGTGCAATGGTGGAAGAATTGTTGGATGAGTTTCACCAAGAAGTAGGCAAACTCCCAAAGAGAATAGTTTTCTTCAGAGATGGGGTAAGCGAAACACAATTCTACAAAGTGCTTCATGAAGAATTGCAAGCCATTAAAAAAGGTTGTTCTAAATTCCCTGGTTACACACCTCCCATAACCTTTGCAGTGGTTCAGAAGAGGCATCACACAAGATTGTTCCCTTTCAAAATTGATCCGTCTTCCAAACAGAACCAGTTCCTCGACGAAAACATTCCCCCGGGAACTGTGGTGGACACGGTGATCACTCACCCGAGAGAGTTTGATTTCTATCTTTGTAGCCATTGGGGTGTTAAGGGAACAAGCCGGCCAACACATTACCACATTCTGTGGGATGAAAACGAGTTCACTTCAGATGAACTGCAGAAACTGGTGAACATTCTATGCTACACATACGTAAGGTGCACCAAGCCGGTTTCTCTGGTGCCCCCGGCTTATTATGCTCACCTAGCTGCGTATAGAGGAAGGCTTTACCTTGAGCGATCGGAATCCACAACAGCTTACACAAGAAGTGGCTCCATACTCTCCAGAGCTGCCCCTCCAAAGGCAATGGCTCTACCAAAACTTAGTGAGAATGTTAGGAAGCTTATGTTTTACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

1022

Amino Acids

116.31

Weight (kDa)

9.23

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 166 - 315 3.2e-28 N-terminal domain of argonaute
ArgoL1 PF08699 325 - 374 7.9e-17 Argonaute linker 1 domain
PAZ PF02170 387 - 509 3.5e-28 PAZ domain
ArgoL2 PF16488 519 - 565 1.7e-06 Argonaute linker 2 domain
Piwi PF02171 673 - 979 8e-91 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 2890
AccB7I CCANNNNNTGG 2 cut(s) 479, 1607
AciI CCGC 2 cut(s) 676, 2072
AclWI GGATC 5 cut(s) 807, 1132, 1386, 2412, 2636
AcoI YGGCCR 3 cut(s) 673, 1708, 2774
AcuI CTGAAG 6 cut(s) 247, 1661, 2081, 2219, 2467, 2802
AfaI GTAC 3 cut(s) 167, 2111, 2201
AfiI CCNNNNNNNGG 4 cut(s) 407, 479, 1607, 3010
AflII CTTAAG 1 cut(s) 1529
AjnI CCWGG 1 cut(s) 2566
Alw21I GWGCWC 1 cut(s) 2873
Alw26I GTCTC 4 cut(s) 2, 355, 1163, 1167
Alw44I GTGCAC 1 cut(s) 2869
AlwI GGATC 5 cut(s) 807, 1132, 1386, 2412, 2636
AlwNI CAGNNNCTG 2 cut(s) 479, 2836
Ama87I CYCGRG 3 cut(s) 1160, 2686, 2719
AoxI GGCC 7 cut(s) 470, 673, 1480, 1598, 1708, 2339, 2774
ApaLI GTGCAC 1 cut(s) 2869
Asp700I GAANNNNTTC 3 cut(s) 1275, 2663, 2679
AspS9I GGNCC 3 cut(s) 1547, 1589, 1598
AsuC2I CCSGG 4 cut(s) 2227, 2687, 2688, 2897
AsuII TTCGAA 1 cut(s) 1929
AvaI CYCGRG 3 cut(s) 1160, 2686, 2719
AvaII GGWCC 2 cut(s) 1547, 1589
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 3 cut(s) 345, 2873, 2895
BaeI ACNNNNGTAYC 2 cut(s) 2067, 2100
BalI TGGCCA 1 cut(s) 1710
BanI GGYRCC 1 cut(s) 2890
BbsI GAAGAC 2 cut(s) 1196, 2640
Bbv12I GWGCWC 1 cut(s) 2873
BciT130I CCWGG 1 cut(s) 2568
BciVI GTATCC 2 cut(s) 1518, 2068
BclI TGATCA 3 cut(s) 609, 1510, 2709
BcnI CCSGG 4 cut(s) 2227, 2687, 2688, 2897
BcoDI GTCTC 4 cut(s) 2, 355, 1163, 1167
BfaI CTAG 6 cut(s) 582, 657, 1085, 1644, 1886, 2915
BfmI CTRYAG 3 cut(s) 1035, 2343, 2828
BfrI CTTAAG 1 cut(s) 1529
BfuI GTATCC 2 cut(s) 1518, 2068
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 5 cut(s) 2227, 2568, 2687, 2688, 2897
Bme18I GGWCC 2 cut(s) 1547, 1589
BmeT110I CYCGRG 3 cut(s) 1160, 2686, 2719
BmgT120I GGNCC 3 cut(s) 1547, 1589, 1598
BmiI GGNNCC 2 cut(s) 2892, 2983
BmrFI CCNGG 5 cut(s) 2227, 2568, 2687, 2688, 2897
BmsI GCATC 5 cut(s) 840, 1899, 2006, 2174, 2620
BpiI GAAGAC 2 cut(s) 1196, 2640
BplI GAGNNNNNCTC 2 cut(s) 620, 652
BpmI CTGGAG 2 cut(s) 1994, 2977
Bpu14I TTCGAA 1 cut(s) 1929
BpuEI CTTGAG 3 cut(s) 898, 2144, 2963
BpuMI CCSGG 4 cut(s) 2227, 2687, 2688, 2897
BsaAI YACGTR 1 cut(s) 2863
BsaBI GATNNNNATC 2 cut(s) 2736, 2953
BsaI GGTCTC 1 cut(s) 1167
BsaJI CCNNGG 9 cut(s) 591, 930, 1492, 1543, 2225, 2566, 2685, 2686, 2895
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 4 cut(s) 407, 479, 1607, 3010
Bse118I RCCGGY 2 cut(s) 2772, 2878
Bse1I ACTGG 7 cut(s) 163, 627, 843, 996, 2249, 2662, 2841
Bse21I CCTNAGG 1 cut(s) 912
Bse3DI GCAATG 2 cut(s) 2421, 3021
Bse8I GATNNNNATC 2 cut(s) 2736, 2953
BseBI CCWGG 1 cut(s) 2568
BseDI CCNNGG 9 cut(s) 591, 930, 1492, 1543, 2225, 2566, 2685, 2686, 2895
BseGI GGATG 9 cut(s) 741, 892, 940, 1348, 1934, 2189, 2278, 2440, 2806
BseJI GATNNNNATC 2 cut(s) 2736, 2953
BseLI CCNNNNNNNGG 4 cut(s) 407, 479, 1607, 3010
BseMI GCAATG 2 cut(s) 2421, 3021
BseMII CTCAG 7 cut(s) 92, 263, 342, 926, 1196, 1296, 1308
BseNI ACTGG 7 cut(s) 163, 627, 843, 996, 2249, 2662, 2841
BseRI GAGGAG 3 cut(s) 198, 1041, 1044
BseSI GKGCMC 3 cut(s) 345, 2873, 2895
Bsh1285I CGRYCG 1 cut(s) 2951
BshFI GGCC 7 cut(s) 472, 675, 1482, 1600, 1710, 2341, 2776
BshNI GGYRCC 1 cut(s) 2890
BsiEI CGRYCG 1 cut(s) 2951
BsiHKAI GWGCWC 1 cut(s) 2873
BsiHKCI CYCGRG 3 cut(s) 1160, 2686, 2719
BsiSI CCGG 6 cut(s) 662, 2227, 2687, 2773, 2879, 2897
BslFI GGGAC 2 cut(s) 508, 570
BslI CCNNNNNNNGG 4 cut(s) 407, 479, 1607, 3010
BsmAI GTCTC 4 cut(s) 2, 355, 1163, 1167
BsmBI CGTCTC 1 cut(s) 1163
BsmFI GGGAC 2 cut(s) 508, 570
BsmI GAATGC 2 cut(s) 1611, 1842
BsnI GGCC 7 cut(s) 472, 675, 1482, 1600, 1710, 2341, 2776
Bso31I GGTCTC 1 cut(s) 1167
BsoBI CYCGRG 3 cut(s) 1160, 2686, 2719
Bsp119I TTCGAA 1 cut(s) 1929
Bsp1286I GDGCHC 3 cut(s) 345, 2873, 2895
Bsp1407I TGTACA 1 cut(s) 2199
BspACI CCGC 2 cut(s) 676, 2072
BspANI GGCC 7 cut(s) 472, 675, 1482, 1600, 1710, 2341, 2776
BspCNI CTCAG 7 cut(s) 91, 262, 341, 925, 1195, 1297, 1309
BspHI TCATGA 3 cut(s) 1581, 1738, 2524
BspLI GGNNCC 2 cut(s) 2892, 2983
BspMAI CTGCAG 2 cut(s) 2347, 2832
BspPI GGATC 5 cut(s) 807, 1132, 1386, 2412, 2636
BspQI GCTCTTC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 1929
BspT107I GGYRCC 1 cut(s) 2890
BspTI CTTAAG 1 cut(s) 1529
BspTNI GGTCTC 1 cut(s) 1167
BsrDI GCAATG 2 cut(s) 2421, 3021
BsrFI RCCGGY 2 cut(s) 2772, 2878
BsrGI TGTACA 1 cut(s) 2199
BsrI ACTGG 7 cut(s) 163, 627, 843, 996, 2249, 2662, 2841
BssAI RCCGGY 2 cut(s) 2772, 2878
BssECI CCNNGG 9 cut(s) 591, 930, 1492, 1543, 2225, 2566, 2685, 2686, 2895
BssT1I CCWWGG 4 cut(s) 591, 930, 1492, 1543
Bst2UI CCWGG 1 cut(s) 2568
Bst4CI ACNGT 6 cut(s) 1276, 1401, 2139, 2191, 2695, 2707
Bst6I CTCTTC 3 cut(s) 9, 198, 2600
BstAFI CTTAAG 1 cut(s) 1529
BstAUI TGTACA 1 cut(s) 2199
BstBAI YACGTR 1 cut(s) 2863
BstBI TTCGAA 1 cut(s) 1929
BstC8I GCNNGC 4 cut(s) 299, 2343, 2538, 2774
BstF5I GGATG 9 cut(s) 741, 892, 940, 1348, 1934, 2189, 2278, 2440, 2806
BstMAI GTCTC 4 cut(s) 2, 355, 1163, 1167
BstMCI CGRYCG 1 cut(s) 2951
BstMWI GCNNNNNNNGC 8 cut(s) 662, 763, 879, 1420, 1687, 2153, 2906, 2915
BstNI CCWGG 1 cut(s) 2568
BstSCI CCNGG 5 cut(s) 2225, 2566, 2685, 2686, 2895
BstSFI CTRYAG 3 cut(s) 1035, 2343, 2828
BstSLI GKGCMC 3 cut(s) 345, 2873, 2895
BstSNI TACGTA 1 cut(s) 2863
BstV2I GAAGAC 2 cut(s) 1196, 2640
BstX2I RGATCY 1 cut(s) 2404
BstXI CCANNNNNNTGG 1 cut(s) 1003
BstYI RGATCY 1 cut(s) 2404
Bsu36I CCTNAGG 1 cut(s) 912
BsuI GTATCC 2 cut(s) 1518, 2068
BsuRI GGCC 7 cut(s) 472, 675, 1482, 1600, 1710, 2341, 2776
BtsCI GGATG 9 cut(s) 741, 892, 940, 1348, 1934, 2189, 2278, 2440, 2806
BtsI GCAGTG 3 cut(s) 1754, 1837, 2601
BtsIMutI CAGTG 4 cut(s) 1314, 1754, 1837, 2601
Cac8I GCNNGC 4 cut(s) 299, 2343, 2538, 2774
CaiI CAGNNNCTG 2 cut(s) 479, 2836
CciI TCATGA 3 cut(s) 1581, 1738, 2524
Cfr10I RCCGGY 2 cut(s) 2772, 2878
Cfr13I GGNCC 3 cut(s) 1547, 1589, 1598
Cfr9I CCCGGG 1 cut(s) 2686
CseI GACGC 1 cut(s) 1145
Csp6I GTAC 3 cut(s) 166, 2110, 2200
CviQI GTAC 3 cut(s) 166, 2110, 2200
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 3 cut(s) 673, 1708, 2774
Eam1104I CTCTTC 3 cut(s) 9, 198, 2600
EarI CTCTTC 3 cut(s) 9, 198, 2600
Eco105I TACGTA 1 cut(s) 2863
Eco130I CCWWGG 4 cut(s) 591, 930, 1492, 1543
Eco31I GGTCTC 1 cut(s) 1167
Eco47I GGWCC 2 cut(s) 1547, 1589
Eco57I CTGAAG 6 cut(s) 247, 1661, 2081, 2219, 2467, 2802
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 3 cut(s) 1160, 2686, 2719
EcoO109I RGGNCCY 1 cut(s) 1589
EcoRI GAATTC 3 cut(s) 701, 1625, 1671
EcoRII CCWGG 1 cut(s) 2566
EcoT14I CCWWGG 4 cut(s) 591, 930, 1492, 1543
ErhI CCWWGG 4 cut(s) 591, 930, 1492, 1543
Esp3I CGTCTC 1 cut(s) 1163
FalI AAGNNNNNCTT 2 cut(s) 746, 778
FaqI GGGAC 2 cut(s) 508, 570
FbaI TGATCA 3 cut(s) 609, 1510, 2709
FokI GGATG 9 cut(s) 728, 899, 947, 1355, 1921, 2196, 2265, 2447, 2813
FspBI CTAG 6 cut(s) 582, 657, 1085, 1644, 1886, 2915
GsuI CTGGAG 2 cut(s) 1994, 2977
HaeIII GGCC 7 cut(s) 472, 675, 1482, 1600, 1710, 2341, 2776
HapII CCGG 6 cut(s) 662, 2227, 2687, 2773, 2879, 2897
HgaI GACGC 1 cut(s) 1145
HindIII AAGCTT 5 cut(s) 366, 716, 1499, 1694, 3050
HpaII CCGG 6 cut(s) 662, 2227, 2687, 2773, 2879, 2897
Hpy166II GTNNAC 7 cut(s) 1439, 1880, 2135, 2701, 2814, 2842, 2871
Hpy8I GTNNAC 7 cut(s) 1439, 1880, 2135, 2701, 2814, 2842, 2871
Hpy99I CGWCG 1 cut(s) 2675
HpyCH4III ACNGT 6 cut(s) 1276, 1401, 2139, 2191, 2695, 2707
HpyCH4IV ACGT 1 cut(s) 2862
HpyF10VI GCNNNNNNNGC 8 cut(s) 662, 763, 879, 1420, 1687, 2153, 2906, 2915
HpySE526I ACGT 1 cut(s) 2862
KroI GCCGGC 1 cut(s) 2772
KroNI GCCGGC 1 cut(s) 2774
Ksp22I TGATCA 3 cut(s) 609, 1510, 2709
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 4 cut(s) 547, 1031, 1459, 2987
LweI GCATC 5 cut(s) 840, 1899, 2006, 2174, 2620
MaeI CTAG 6 cut(s) 582, 657, 1085, 1644, 1886, 2915
MaeII ACGT 1 cut(s) 2862
MaeIII GTNAC 7 cut(s) 26, 457, 1108, 1714, 2272, 2373, 2570
MfeI CAATTG 1 cut(s) 1911
MflI RGATCY 1 cut(s) 2404
MhlI GDGCHC 3 cut(s) 345, 2873, 2895
MlsI TGGCCA 1 cut(s) 1710
MluNI TGGCCA 1 cut(s) 1710
MlyI GAGTC 5 cut(s) 26, 470, 490, 961, 1587
MmeI TCCRAC 3 cut(s) 730, 2158, 2412
Mox20I TGGCCA 1 cut(s) 1710
MroNI GCCGGC 1 cut(s) 2772
MroXI GAANNNNTTC 3 cut(s) 1275, 2663, 2679
MscI TGGCCA 1 cut(s) 1710
MslI CAYNNNNRTG 4 cut(s) 564, 1133, 2258, 2754
Msp20I TGGCCA 1 cut(s) 1710
MspA1I CMGCKG 1 cut(s) 2014
MspCI CTTAAG 1 cut(s) 1529
MspI CCGG 6 cut(s) 662, 2227, 2687, 2773, 2879, 2897
MspR9I CCNGG 5 cut(s) 2227, 2568, 2687, 2688, 2897
MunI CAATTG 1 cut(s) 1911
Mva1269I GAATGC 2 cut(s) 1611, 1842
MvaI CCWGG 1 cut(s) 2568
MwoI GCNNNNNNNGC 8 cut(s) 662, 763, 879, 1420, 1687, 2153, 2906, 2915
NaeI GCCGGC 1 cut(s) 2774
NciI CCSGG 4 cut(s) 2227, 2687, 2688, 2897
NgoMIV GCCGGC 1 cut(s) 2772
NlaIV GGNNCC 2 cut(s) 2892, 2983
NmuCI GTSAC 3 cut(s) 457, 1108, 2373
NspV TTCGAA 1 cut(s) 1929
PaeR7I CTCGAG 1 cut(s) 1160
PagI TCATGA 3 cut(s) 1581, 1738, 2524
PciSI GCTCTTC 1 cut(s) 198
PctI GAATGC 2 cut(s) 1611, 1842
PdiI GCCGGC 1 cut(s) 2774
PdmI GAANNNNTTC 3 cut(s) 1275, 2663, 2679
PfeI GAWTC 5 cut(s) 682, 1321, 1753, 1967, 2954
PflMI CCANNNNNTGG 2 cut(s) 479, 1607
Ple19I CGATCG 1 cut(s) 2951
PleI GAGTC 5 cut(s) 25, 470, 490, 960, 1586
PpsI GAGTC 5 cut(s) 25, 470, 490, 960, 1586
Ppu21I YACGTR 1 cut(s) 2863
PpuMI RGGWCCY 1 cut(s) 1589
Psp5II RGGWCCY 1 cut(s) 1589
Psp6I CCWGG 1 cut(s) 2566
PspGI CCWGG 1 cut(s) 2566
PspN4I GGNNCC 2 cut(s) 2892, 2983
PspPI GGNCC 3 cut(s) 1547, 1589, 1598
PspPPI RGGWCCY 1 cut(s) 1589
PstI CTGCAG 2 cut(s) 2347, 2832
PstNI CAGNNNCTG 2 cut(s) 479, 2836
PsuI RGATCY 1 cut(s) 2404
PvuI CGATCG 1 cut(s) 2951
PvuII CAGCTG 1 cut(s) 2014
RsaI GTAC 3 cut(s) 167, 2111, 2201
RsaNI GTAC 3 cut(s) 166, 2110, 2200
RseI CAYNNNNRTG 4 cut(s) 564, 1133, 2258, 2754
SapI GCTCTTC 1 cut(s) 198
Sau96I GGNCC 3 cut(s) 1547, 1589, 1598
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 5 cut(s) 26, 470, 490, 961, 1587
ScrFI CCNGG 5 cut(s) 2227, 2568, 2687, 2688, 2897
SduI GDGCHC 3 cut(s) 345, 2873, 2895
SfaNI GCATC 5 cut(s) 840, 1899, 2006, 2174, 2620
SfcI CTRYAG 3 cut(s) 1035, 2343, 2828
Sfr274I CTCGAG 1 cut(s) 1160
SfuI TTCGAA 1 cut(s) 1929
SinI GGWCC 2 cut(s) 1547, 1589
SlaI CTCGAG 1 cut(s) 1160
SmaI CCCGGG 1 cut(s) 2688
SmiMI CAYNNNNRTG 4 cut(s) 564, 1133, 2258, 2754
SmlI CTYRAG 5 cut(s) 877, 1160, 1529, 2159, 2942
SmoI CTYRAG 5 cut(s) 877, 1160, 1529, 2159, 2942
SnaBI TACGTA 1 cut(s) 2863
SsiI CCGC 2 cut(s) 676, 2072
SspMI CTAG 6 cut(s) 582, 657, 1085, 1644, 1886, 2915
StyD4I CCNGG 5 cut(s) 2225, 2566, 2685, 2686, 2895
StyI CCWWGG 4 cut(s) 591, 930, 1492, 1543
TaaI ACNGT 6 cut(s) 1276, 1401, 2139, 2191, 2695, 2707
TaiI ACGT 1 cut(s) 2865
TaqI TCGA 8 cut(s) 353, 604, 699, 1161, 1171, 1929, 2292, 2670
TaqII GACCGA 1 cut(s) 1564
TatI WGTACW 3 cut(s) 165, 2109, 2199
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 5 cut(s) 682, 1321, 1753, 1967, 2954
TscAI CASTG 4 cut(s) 1321, 1754, 1844, 2601
TseFI GTSAC 3 cut(s) 457, 1108, 2373
Tsp45I GTSAC 3 cut(s) 457, 1108, 2373
TspDTI ATGAA 9 cut(s) 282, 531, 914, 1843, 2348, 2513, 2541, 2817, 2838
TspGWI ACGGA 3 cut(s) 1096, 1625, 2634
TspMI CCCGGG 1 cut(s) 2686
TspRI CASTG 4 cut(s) 1321, 1754, 1844, 2601
Van91I CCANNNNNTGG 2 cut(s) 479, 1607
Vha464I CTTAAG 1 cut(s) 1529
VneI GTGCAC 1 cut(s) 2869
VpaK11BI GGWCC 2 cut(s) 1547, 1589
XbaI TCTAGA 1 cut(s) 1643
XcmI CCANNNNNNNNNTGG 2 cut(s) 1127, 1490
XhoI CTCGAG 1 cut(s) 1160
XmaI CCCGGG 1 cut(s) 2686
XmnI GAANNNNTTC 3 cut(s) 1275, 2663, 2679
XspI CTAG 6 cut(s) 582, 657, 1085, 1644, 1886, 2915
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.