pycom05g32080

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000724
Physical Location & Seq
Forward (+)
31609402 .. 31609899
498 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32080.1

Sequence Viewer

Length: 498 bp
ATGCACCACAACAAAGAGGATCAGACAGCAGAGGAGCTGTTCTACCATGAGCATAACGAGCTTTTGTTGTTTGCGCAAGAATGGATAAAAGAAACGGTTGAGTCATGCTCAACCGTGGCTGTGCTAGTGGCCACTGTGGTCTTTGCGGCCGCCTACGCCATTAATGGGGCTAATGAACAACGTGGCCGTCCTGTTTTCCAGGATGATCCTCTCTCTTTGCTATTCACCTGCATGGACGTTGTGGCCATCGCCTGCTCATTGTCTTCTATGGCTTTCTTTCTCTCTGTTCTCTTTCTCTACTCGAGTACCCGCTTTTCATTAGCAGCCTTCCTCCCAAGGTCGTATTCATCTTGCTCTTCTTGTGCATGGCAACCACCATGCTCGCCAGAAATGGGCCAAGTCTCTACTTTACCCTATTGCCTTTTTCCCAATCCCTCTATTCGATTTGATATAATTTCCTATGTATTAATCTTTCAAAGTCATGTTTCAGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

166

Amino Acids

18.48

Weight (kDa)

4.79

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 27 - 97 4.9e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc16I TGCGCA 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 236
AciI CCGC 3 cut(s) 146, 150, 310
AclWI GGATC 2 cut(s) 27, 200
AcoI YGGCCR 4 cut(s) 129, 147, 184, 243
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 2 cut(s) 165, 392
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AluBI AGCT 2 cut(s) 37, 61
AluI AGCT 2 cut(s) 37, 61
Alw26I GTCTC 1 cut(s) 406
AlwI GGATC 2 cut(s) 27, 200
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 5 cut(s) 129, 147, 184, 243, 394
ApeKI GCWGC 1 cut(s) 323
AseI ATTAAT 2 cut(s) 162, 467
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 217
AvaI CYCGRG 1 cut(s) 301
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BalI TGGCCA 2 cut(s) 131, 245
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 3 cut(s) 147, 150, 324
BlsI GCNGC 3 cut(s) 148, 151, 325
Bme1390I CCNGG 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 394
BmrFI CCNGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BsaJI CCNNGG 2 cut(s) 114, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 392
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 114, 335
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 165, 392
BseRI GAGGAG 1 cut(s) 47
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 335
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 5 cut(s) 131, 149, 186, 245, 396
BsiEI CGRYCG 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 165, 392
BsmAI GTCTC 1 cut(s) 406
BsnI GGCC 5 cut(s) 131, 149, 186, 245, 396
BsoBI CYCGRG 1 cut(s) 301
Bsp143I GATC 2 cut(s) 19, 205
BspACI CCGC 3 cut(s) 146, 150, 310
BspANI GGCC 5 cut(s) 131, 149, 186, 245, 396
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 27, 200
BspQI GCTCTTC 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 114, 335
BssMI GATC 2 cut(s) 19, 205
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 97, 115, 136
Bst6I CTCTTC 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 253, 383
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 22, 208
BstMAI GTCTC 1 cut(s) 406
BstMBI GATC 2 cut(s) 19, 205
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 58, 155
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 5 cut(s) 131, 149, 186, 245, 396
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 253, 383
CciNI GCGGCCGC 1 cut(s) 147
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 306
CviAII CATG 6 cut(s) 47, 105, 232, 366, 378, 482
CviQI GTAC 1 cut(s) 306
DpnI GATC 2 cut(s) 21, 207
DpnII GATC 2 cut(s) 19, 205
EaeI YGGCCR 4 cut(s) 129, 147, 184, 243
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 335
Eco52I CGGCCG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 6 cut(s) 50, 108, 235, 369, 381, 485
FatI CATG 6 cut(s) 46, 104, 231, 365, 377, 481
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 147, 150, 324
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 147, 150, 324
FspBI CTAG 1 cut(s) 125
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 1 cut(s) 75
GluI GCNGC 3 cut(s) 147, 150, 324
HaeIII GGCC 5 cut(s) 131, 149, 186, 245, 396
HhaI GCGC 1 cut(s) 76
Hin1II CATG 6 cut(s) 50, 108, 235, 369, 381, 485
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 24, 490
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 3 cut(s) 97, 115, 136
HpyCH4IV ACGT 2 cut(s) 181, 237
HpyCH4V TGCA 3 cut(s) 4, 231, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 155
HpySE526I ACGT 2 cut(s) 181, 237
Hsp92II CATG 6 cut(s) 50, 108, 235, 369, 381, 485
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 2 cut(s) 19, 205
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 185, 204, 212, 241, 265, 399
Lsp1109I GCAGC 1 cut(s) 335
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 181, 237
MalI GATC 2 cut(s) 21, 207
MboI GATC 2 cut(s) 19, 205
MboII GAAGA 2 cut(s) 255, 348
MlsI TGGCCA 2 cut(s) 131, 245
MluCI AATT 2 cut(s) 453, 493
MluNI TGGCCA 2 cut(s) 131, 245
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 10, 25, 219, 341, 445
Mox20I TGGCCA 2 cut(s) 131, 245
MscI TGGCCA 2 cut(s) 131, 245
MseI TTAA 2 cut(s) 162, 467
MslI CAYNNNNRTG 1 cut(s) 230
Msp20I TGGCCA 2 cut(s) 131, 245
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 58, 155
NdeII GATC 2 cut(s) 19, 205
NlaIII CATG 6 cut(s) 50, 108, 235, 369, 381, 485
NotI GCGGCCGC 1 cut(s) 147
NsbI TGCGCA 1 cut(s) 75
PaeR7I CTCGAG 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 236
PciSI GCTCTTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 3 cut(s) 148, 151, 325
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PshBI ATTAAT 2 cut(s) 162, 467
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 1 cut(s) 394
PspXI VCTCGAGB 1 cut(s) 301
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 2 cut(s) 162, 467
SatI GCNGC 3 cut(s) 147, 150, 324
Sau3AI GATC 2 cut(s) 19, 205
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 200
SetI ASST 6 cut(s) 39, 63, 184, 230, 240, 341
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 453, 493
SsiI CCGC 3 cut(s) 146, 150, 310
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 3 cut(s) 97, 115, 136
TaiI ACGT 2 cut(s) 184, 240
TaqI TCGA 2 cut(s) 302, 442
TasI AATT 2 cut(s) 453, 493
TauI GCSGC 2 cut(s) 149, 152
Tru1I TTAA 2 cut(s) 162, 467
Tru9I TTAA 2 cut(s) 162, 467
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 189, 306, 336
TspRI CASTG 1 cut(s) 139
VspI ATTAAT 2 cut(s) 162, 467
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.