Rroxscaffold_1G00071320

ankyrin repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
92182641 .. 92183774
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071320.1

Sequence Viewer

Length: 924 bp
ATGCACTGTCAGTCGCACATCTTTGATGTGACGAAGAGGTACCGGTTAACATCAAGGTTGGCTCGACAAACCGATAAGAATGGATTCACAATACTGCACTATGTTGGAAACATGAAATTTTTTAAAGGAGGCACCCAGCCTGGTCCTGCACTTCAGTTGCAGGAAGAGTTAGAATGGTATGAGAAGGTGGAGGAGTTCGTCCCACGATATTATGCAATGAACCGCAGCAGCAGGAACGAACAAAAAGAGACGCCCGAAGAGTTCTATAGTCGAAAATTTAAGGAAACTGTAGAGGAGTTGTCTCAGCAAAGAAGAGACCCCCAGAGAGCACTTTGCTCGAACAGTCGAACCCATGGGGAGCTCCTCGAGGAAGCACAAGAATGGCTAAACCAGACCTCCAACTCGTGCTCCTTGGTGGCCGCACTAATTGCCTCCGTAGCCTTCGCGGCCGCTTTCACCATCCCTGGCGGCAACAACAGCAGAAACGGCCAGCCCATCCTCATCGAGAGCCCTTTCTTCTTGGTCTTCATCATCACTAACGCTCTCTCCATCGCCAGCTCGCTGACGTCACTCGCCATGTTCCTCTACGTCCTGTCGTCACCGTACGAGCTTGACGACTTCCGCCACTGTCTCCCTCAGAAGCTCATCTTCGGCTTCACCTTCCTCTTCTTCTCGGTGGCCGTCACCATGCTCGCCTTTGCCTCCACAATGATACTGACAATTCCGATAAAGAAGCGCCTGACTACAACTCTTATATACTGCGTTGCGTTTCTTCCGGTCACCATGTTTGCGCTGTTGCAGTACCCGCTGTGGGAGGCCTTCAAAAGGACTGGAAAGTCCTCAGTCAAAGTCGTGACAAGAATTCTTCCGTGGCCACTTACTGAAACTGCTTGCTCAAAGGCCACTAAGGCCCACACTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

307

Amino Acids

35.02

Weight (kDa)

9.07

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 127 - 239 4.8e-26 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000724)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 835
AatII GACGTC 1 cut(s) 569
AbsI CCTCGAGG 1 cut(s) 365
Acc65I GGTACC 1 cut(s) 39
AccB1I GGYRCC 2 cut(s) 39, 131
AccII CGCG 1 cut(s) 446
AciI CCGC 7 cut(s) 223, 420, 446, 450, 468, 622, 806
AcoI YGGCCR 5 cut(s) 417, 447, 487, 678, 872
AcsI RAATTY 3 cut(s) 116, 275, 861
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 2 cut(s) 251, 566
AfaI GTAC 3 cut(s) 41, 605, 803
AfiI CCNNNNNNNGG 2 cut(s) 811, 825
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 823
AjnI CCWGG 2 cut(s) 139, 463
AluBI AGCT 4 cut(s) 361, 558, 610, 643
AluI AGCT 4 cut(s) 361, 558, 610, 643
Alw21I GWGCWC 3 cut(s) 331, 363, 410
Alw26I GTCTC 4 cut(s) 242, 306, 309, 635
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 8 cut(s) 417, 447, 487, 678, 816, 872, 900, 909
ApeKI GCWGC 2 cut(s) 225, 228
ApoI RAATTY 3 cut(s) 116, 275, 861
AsiGI ACCGGT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 83
Asp718I GGTACC 1 cut(s) 39
AspLEI GCGC 2 cut(s) 738, 793
AspS9I GGNCC 2 cut(s) 143, 910
AsuHPI GGTGA 5 cut(s) 448, 591, 649, 676, 772
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 874
BanI GGYRCC 2 cut(s) 39, 131
BanII GRGCYC 2 cut(s) 363, 512
BauI CACGAG 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 517
Bbv12I GWGCWC 3 cut(s) 331, 363, 410
BbvI GCAGC 2 cut(s) 237, 240
BccI CCATC 3 cut(s) 467, 503, 557
BceAI ACGGC 2 cut(s) 502, 665
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 2 cut(s) 141, 465
BcoDI GTCTC 4 cut(s) 242, 306, 309, 635
BfmI CTRYAG 2 cut(s) 265, 288
BfoI RGCGCY 1 cut(s) 739
BglI GCCNNNNNGGC 2 cut(s) 446, 908
BisI GCNGC 6 cut(s) 226, 229, 420, 447, 450, 469
BlsI GCNGC 6 cut(s) 227, 230, 421, 448, 451, 470
Bme1390I CCNGG 2 cut(s) 141, 465
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 143, 910
BmiI GGNNCC 2 cut(s) 41, 133
BmrFI CCNGG 2 cut(s) 141, 465
BpiI GAAGAC 1 cut(s) 517
BsaHI GRCGYC 2 cut(s) 251, 566
BsaI GGTCTC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 352, 411, 463, 869
BsaWI WCCGGW 2 cut(s) 42, 775
BsaXI ACNNNNNCTCC 6 cut(s) 380, 392, 410, 422, 530, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 811, 825
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 835
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 141, 465
BseDI CCNNGG 4 cut(s) 352, 411, 463, 869
BseGI GGATG 2 cut(s) 459, 495
BseLI CCNNNNNNNGG 2 cut(s) 811, 825
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 317, 650, 855
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 3 cut(s) 206, 308, 353
BseX3I CGGCCG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 237, 240
BseYI CCCAGC 1 cut(s) 135
BsgI GTGCAG 2 cut(s) 80, 132
Bsh1236I CGCG 1 cut(s) 446
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 8 cut(s) 419, 449, 489, 680, 818, 874, 902, 911
BshNI GGYRCC 2 cut(s) 39, 131
BshTI ACCGGT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 3 cut(s) 331, 363, 410
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 2 cut(s) 43, 776
BsiWI CGTACG 1 cut(s) 603
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 811, 825
BsmAI GTCTC 4 cut(s) 242, 306, 309, 635
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 8 cut(s) 419, 449, 489, 680, 818, 874, 902, 911
Bso31I GGTCTC 1 cut(s) 309
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 4 cut(s) 331, 363, 410, 512
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 7 cut(s) 223, 420, 446, 450, 468, 622, 806
BspANI GGCC 8 cut(s) 419, 449, 489, 680, 818, 874, 902, 911
BspCNI CTCAG 3 cut(s) 316, 649, 854
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 41, 133
BspT107I GGYRCC 2 cut(s) 39, 131
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 4 cut(s) 352, 411, 463, 869
BssNI GRCGYC 2 cut(s) 251, 566
BssSI CACGAG 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 352, 411
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 2 cut(s) 141, 465
Bst4CI ACNGT 5 cut(s) 8, 289, 344, 603, 629
Bst6I CTCTTC 5 cut(s) 29, 159, 252, 307, 671
BstACI GRCGYC 2 cut(s) 251, 566
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 5 cut(s) 491, 556, 560, 693, 892
BstDEI CTNAG 4 cut(s) 303, 636, 841, 906
BstDSI CCRYGG 2 cut(s) 352, 869
BstEII GGTNACC 1 cut(s) 778
BstENI CCTNNNNNAGG 1 cut(s) 823
BstF5I GGATG 2 cut(s) 459, 495
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 2 cut(s) 738, 793
BstMAI GTCTC 4 cut(s) 242, 306, 309, 635
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 7 cut(s) 428, 437, 446, 477, 486, 805, 908
BstNI CCWGG 2 cut(s) 141, 465
BstPI GGTNACC 1 cut(s) 778
BstSCI CCNGG 2 cut(s) 139, 463
BstSFI CTRYAG 2 cut(s) 265, 288
BstUI CGCG 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 237, 240
BstV2I GAAGAC 1 cut(s) 517
BstZI CGGCCG 1 cut(s) 447
BsuRI GGCC 8 cut(s) 419, 449, 489, 680, 818, 874, 902, 911
BtgI CCRYGG 2 cut(s) 352, 869
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 2 cut(s) 459, 495
BtsIMutI CAGTG 2 cut(s) 4, 625
Cac8I GCNNGC 5 cut(s) 491, 556, 560, 693, 892
CciNI GCGGCCGC 1 cut(s) 447
CfoI GCGC 2 cut(s) 738, 793
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 2 cut(s) 143, 910
CseI GACGC 1 cut(s) 259
Csp6I GTAC 3 cut(s) 40, 604, 802
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 5 cut(s) 112, 353, 577, 688, 784
CviQI GTAC 3 cut(s) 40, 604, 802
DdeI CTNAG 4 cut(s) 303, 636, 841, 906
DraI TTTAAA 1 cut(s) 124
DrdI GACNNNNNNGTC 1 cut(s) 835
DseDI GACNNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 5 cut(s) 417, 447, 487, 678, 872
EagI CGGCCG 1 cut(s) 447
Eam1104I CTCTTC 5 cut(s) 29, 159, 252, 307, 671
EarI CTCTTC 5 cut(s) 29, 159, 252, 307, 671
EciI GGCGGA 1 cut(s) 611
Ecl136II GAGCTC 1 cut(s) 361
EclXI CGGCCG 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 352, 411
Eco147I AGGCCT 1 cut(s) 818
Eco24I GRGCYC 2 cut(s) 363, 512
Eco31I GGTCTC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 143
Eco52I CGGCCG 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 778
EcoRI GAATTC 1 cut(s) 861
EcoRII CCWGG 2 cut(s) 139, 463
EcoT14I CCWWGG 2 cut(s) 352, 411
EcoT38I GRGCYC 2 cut(s) 363, 512
ErhI CCWWGG 2 cut(s) 352, 411
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 5 cut(s) 115, 356, 580, 691, 787
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 185
FatI CATG 5 cut(s) 111, 352, 576, 687, 783
FauI CCCGC 1 cut(s) 813
Fnu4HI GCNGC 6 cut(s) 226, 229, 420, 447, 450, 469
FokI GGATG 2 cut(s) 446, 482
FriOI GRGCYC 2 cut(s) 363, 512
Fsp4HI GCNGC 6 cut(s) 226, 229, 420, 447, 450, 469
GlaI GCGC 2 cut(s) 737, 792
GluI GCNGC 6 cut(s) 226, 229, 420, 447, 450, 469
GsaI CCCAGC 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 8 cut(s) 419, 449, 489, 680, 818, 874, 902, 911
HapII CCGG 2 cut(s) 43, 776
HgaI GACGC 1 cut(s) 259
HhaI GCGC 2 cut(s) 738, 793
Hin1I GRCGYC 2 cut(s) 251, 566
Hin1II CATG 5 cut(s) 115, 356, 580, 691, 787
Hin6I GCGC 2 cut(s) 736, 791
HinP1I GCGC 2 cut(s) 736, 791
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 84
HpaI GTTAAC 1 cut(s) 48
HpaII CCGG 2 cut(s) 43, 776
HphI GGTGA 5 cut(s) 448, 591, 649, 676, 772
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 639, 726
Hpy188III TCNNGA 2 cut(s) 505, 853
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 4 cut(s) 178, 451, 670, 829
HpyCH4III ACNGT 5 cut(s) 8, 289, 344, 603, 629
HpyCH4IV ACGT 2 cut(s) 566, 588
HpyCH4V TGCA 6 cut(s) 4, 97, 149, 160, 215, 799
HpyF10VI GCNNNNNNNGC 7 cut(s) 428, 437, 446, 477, 486, 805, 908
HpyF3I CTNAG 4 cut(s) 303, 636, 841, 906
HpySE526I ACGT 2 cut(s) 566, 588
Hsp92I GRCGYC 2 cut(s) 251, 566
Hsp92II CATG 5 cut(s) 115, 356, 580, 691, 787
HspAI GCGC 2 cut(s) 736, 791
KpnI GGTACC 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 48
LmnI GCTCC 3 cut(s) 358, 366, 413
Lsp1109I GCAGC 2 cut(s) 237, 240
MaeII ACGT 2 cut(s) 566, 588
MaeIII GTNAC 6 cut(s) 28, 567, 597, 682, 778, 853
MhlI GDGCHC 4 cut(s) 331, 363, 410, 512
MlsI TGGCCA 1 cut(s) 874
MluCI AATT 5 cut(s) 116, 275, 426, 720, 861
MluNI TGGCCA 1 cut(s) 874
MmeI TCCRAC 2 cut(s) 85, 423
Mox20I TGGCCA 1 cut(s) 874
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 874
MseI TTAA 3 cut(s) 47, 123, 279
MslI CAYNNNNRTG 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 874
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 2 cut(s) 43, 776
MspR9I CCNGG 2 cut(s) 141, 465
MvaI CCWGG 2 cut(s) 141, 465
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 7 cut(s) 428, 437, 446, 477, 486, 805, 908
NcoI CCATGG 1 cut(s) 352
NlaIII CATG 5 cut(s) 115, 356, 580, 691, 787
NlaIV GGNNCC 2 cut(s) 41, 133
NmuCI GTSAC 6 cut(s) 28, 567, 597, 682, 778, 853
NotI GCGGCCGC 1 cut(s) 447
PaeR7I CTCGAG 1 cut(s) 365
PceI AGGCCT 1 cut(s) 818
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 603
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 6 cut(s) 227, 230, 421, 448, 451, 470
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 139, 463
PspEI GGTNACC 1 cut(s) 778
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 139, 463
PspLI CGTACG 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 41, 133
PspPI GGNCC 2 cut(s) 143, 910
PspXI VCTCGAGB 1 cut(s) 365
RsaI GTAC 3 cut(s) 41, 605, 803
RsaNI GTAC 3 cut(s) 40, 604, 802
RseI CAYNNNNRTG 1 cut(s) 379
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 3 cut(s) 47, 123, 279
SatI GCNGC 6 cut(s) 226, 229, 420, 447, 450, 469
Sau96I GGNCC 2 cut(s) 143, 910
ScrFI CCNGG 2 cut(s) 141, 465
SduI GDGCHC 4 cut(s) 331, 363, 410, 512
SfcI CTRYAG 2 cut(s) 265, 288
SfiI GGCCNNNNNGGCC 1 cut(s) 908
Sfr274I CTCGAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 5 cut(s) 116, 275, 426, 720, 861
SseBI AGGCCT 1 cut(s) 818
SsiI CCGC 7 cut(s) 223, 420, 446, 450, 468, 622, 806
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 818
StyD4I CCNGG 2 cut(s) 139, 463
StyI CCWWGG 2 cut(s) 352, 411
TaaI ACNGT 5 cut(s) 8, 289, 344, 603, 629
TaiI ACGT 2 cut(s) 569, 591
TaqI TCGA 6 cut(s) 64, 271, 338, 346, 366, 504
TasI AATT 5 cut(s) 116, 275, 426, 720, 861
TauI GCSGC 4 cut(s) 422, 449, 452, 471
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 3 cut(s) 47, 123, 279
Tru9I TTAA 3 cut(s) 47, 123, 279
TscAI CASTG 1 cut(s) 632
TseFI GTSAC 6 cut(s) 28, 567, 597, 682, 778, 853
TseI GCWGC 2 cut(s) 225, 228
Tsp45I GTSAC 6 cut(s) 28, 567, 597, 682, 778, 853
TspDTI ATGAA 3 cut(s) 128, 233, 517
TspGWI ACGGA 2 cut(s) 424, 858
TspRI CASTG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 823
XapI RAATTY 3 cut(s) 116, 275, 861
XhoI CTCGAG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 83
ZraI GACGTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.