Prupe.8G021100_v2.0.a1

Ankyrin repeat-containing protein At3g12360-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000724
Physical Location & Seq
Reverse (-)
1909420 .. 1910903
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G021100.1

Sequence Viewer

Length: 570 bp
ATGGAGAATAAGACAGCGGAGCAGCTCTTCAATAGTGAGCACGCAAAACTTCTTCAGTCGGCTCAAACATGGATAAAAGAGACTGCTCAGTCATGTTTGACGGTGGCAGCTTTGGTGGCCACCGTTGTCTATGCAGCCGCCTACACGGCTCCCAGGGGTAATGATTCAAACGGGGTTCCTGTTCTCCGGCATTCTTCTTTCTTCTTCACATTTGCTGTTGCTGACACAGTCTCGCTCATCAGTTCATTGGCTTCTTTGGTCACGTTTCTCTCTATCCTGACATCGCCGCTTGAGTACCAAGACTTTTATCGTTCTCTTCCATTCAAGCTGCATTTGGGGTTCACCCTTCTGTTCTTCTCACTAATAACCACCATGCTCACCTTCATTGCTACTACTTTGCTCTTGATTCATCCCCAAAAGAAATGGACAACGCCGCTCGTGGCATTAGGGGAAACAGTTGCATTGCGTACAAGGCATTTCCAAGTTTATCAAGCAGTTGAGACCTTGCAGCAGATTTTAGAGGGTACAAATATATGGTCTACCATGACATATCAACGTCGTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

190

Amino Acids

21.2

Weight (kDa)

8.76

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
AccBSI CCGCTC 1 cut(s) 436
AccI GTMKAC 1 cut(s) 539
AciI CCGC 4 cut(s) 17, 138, 287, 434
AcoI YGGCCR 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 3 cut(s) 296, 469, 526
AgsI TTSAA 3 cut(s) 31, 168, 325
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 25, 110, 328
AluI AGCT 3 cut(s) 25, 110, 328
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 74, 235, 494
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 5 cut(s) 22, 107, 134, 328, 508
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AsuHPI GGTGA 2 cut(s) 334, 370
BalI TGGCCA 1 cut(s) 119
BauI CACGAG 1 cut(s) 437
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 5 cut(s) 34, 119, 146, 315, 520
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 154
BcoDI GTCTC 3 cut(s) 74, 235, 494
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 8 cut(s) 23, 108, 135, 138, 287, 329, 434, 509
BlsI GCNGC 8 cut(s) 24, 109, 136, 139, 288, 330, 435, 510
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 150, 177
BmrFI CCNGG 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 152, 153
Bse3DI GCAATG 2 cut(s) 384, 461
BseBI CCWGG 1 cut(s) 154
BseDI CCNNGG 2 cut(s) 152, 153
BseGI GGATG 1 cut(s) 409
BseMI GCAATG 2 cut(s) 384, 461
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 5 cut(s) 34, 119, 146, 315, 520
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 187
BsmAI GTCTC 3 cut(s) 74, 235, 494
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 42
BspACI CCGC 4 cut(s) 17, 138, 287, 434
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 150, 177
BspQI GCTCTTC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 384, 461
BssECI CCNNGG 2 cut(s) 152, 153
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 4 cut(s) 103, 124, 229, 457
Bst6I CTCTTC 2 cut(s) 32, 321
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 409
BstMAI GTCTC 3 cut(s) 74, 235, 494
BstMWI GCNNNNNNNGC 3 cut(s) 116, 146, 472
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 5 cut(s) 34, 119, 146, 315, 520
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 42
Csp6I GTAC 3 cut(s) 295, 468, 525
CviAII CATG 5 cut(s) 69, 93, 373, 544, 563
CviJI RGCY 8 cut(s) 25, 62, 110, 119, 137, 149, 251, 328
CviKI_1 RGCY 8 cut(s) 25, 62, 110, 119, 137, 149, 251, 328
CviQI GTAC 3 cut(s) 295, 468, 525
DdeI CTNAG 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 32, 321
EarI CTCTTC 2 cut(s) 32, 321
Eco31I GGTCTC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 152
FaeI CATG 5 cut(s) 72, 96, 376, 547, 566
FaiI YATR 9 cut(s) 70, 94, 132, 374, 533, 535, 545, 550, 564
FatI CATG 5 cut(s) 68, 92, 372, 543, 562
FblI GTMKAC 1 cut(s) 539
Fnu4HI GCNGC 8 cut(s) 23, 108, 135, 138, 287, 329, 434, 509
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 8 cut(s) 23, 108, 135, 138, 287, 329, 434, 509
GluI GCNGC 8 cut(s) 23, 108, 135, 138, 287, 329, 434, 509
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 187
Hin1II CATG 5 cut(s) 72, 96, 376, 547, 566
HinfI GANTC 2 cut(s) 164, 406
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 334, 370
Hpy166II GTNNAC 2 cut(s) 342, 540
Hpy188III TCNNGA 2 cut(s) 277, 403
Hpy8I GTNNAC 2 cut(s) 342, 540
Hpy99I CGWCG 1 cut(s) 561
HpyAV CCTTC 2 cut(s) 356, 391
HpyCH4III ACNGT 4 cut(s) 103, 124, 229, 457
HpyCH4IV ACGT 2 cut(s) 263, 556
HpyCH4V TGCA 4 cut(s) 134, 331, 461, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 146, 472
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 2 cut(s) 263, 556
Hsp92II CATG 5 cut(s) 72, 96, 376, 547, 566
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 2 cut(s) 19, 154
LpnPI CCDG 5 cut(s) 139, 166, 192, 200, 290
Lsp1109I GCAGC 5 cut(s) 34, 119, 146, 315, 520
MaeII ACGT 2 cut(s) 263, 556
MaeIII GTNAC 1 cut(s) 259
MbiI CCGCTC 1 cut(s) 436
MboII GAAGA 7 cut(s) 19, 44, 186, 193, 196, 308, 346
MhlI GDGCHC 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MnlI CCTC 1 cut(s) 514
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 568
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 116, 146, 472
NlaIII CATG 5 cut(s) 72, 96, 376, 547, 566
NlaIV GGNNCC 2 cut(s) 150, 177
NmuCI GTSAC 1 cut(s) 259
PasI CCCWGGG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 32
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 164, 406
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 24, 109, 136, 139, 288, 330, 435, 510
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 2 cut(s) 150, 177
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 3 cut(s) 296, 469, 526
RsaNI GTAC 3 cut(s) 295, 468, 525
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 568
SatI GCNGC 8 cut(s) 23, 108, 135, 138, 287, 329, 434, 509
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 42
SetI ASST 7 cut(s) 27, 112, 266, 330, 383, 506, 559
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SsiI CCGC 4 cut(s) 17, 138, 287, 434
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 103, 124, 229, 457
TaiI ACGT 2 cut(s) 266, 559
TauI GCSGC 3 cut(s) 140, 289, 436
TfiI GAWTC 2 cut(s) 164, 406
Tru1I TTAA 1 cut(s) 568
Tru9I TTAA 1 cut(s) 568
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 5 cut(s) 22, 107, 134, 328, 508
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 234, 373, 398
Tth111I GACNNNGTC 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.