Prupe.8G029600_v2.0.a1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000724
Physical Location & Seq
Forward (+)
2754362 .. 2756606
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G029600.1

Sequence Viewer

Length: 1020 bp
ATGGCCATAAAGTATCGCCGGCTGGCCATCTTTAACATACTAAAAAAGAGCAAATCGATAACGTCAAGGTTGGCTTACAGGATTGATATTGACGGGAACACCATATTGCACCACGCTGCACATGTGAGTTCTCACCCTGTAGACGCTCAACGCTCAAGTGGTCCTGCATTTCAATTGCAAGAAGAATTGCGTTGGATGGCGCGTGTGGAAAGGATAATGCCACGTCATTACGCCATGCACCAGAACAATCAGGGCCTGACAGCGCAGAAGCTCTTCGAGAATGAGCATGCAAAAGTTCTTAAATCAGCAAAAGTATGGATAAAAGAGACAGCTCAGTCGTGCTCGACCGTGGCAGCTTTGGTGGCTACCGTGGCCTATGCAGCTGCCTTTACGGCTCCCGGGGGTAATGATAACAACGGGGTTCCTGTTCTCAAGCATTCTCCTTTCTTTGTCACATTCGCCGTTTCGGACATTATCTCACTCATCTTCTCATTGACTTCTTTGTGCACGTTTCTTTCTATCCTGACGTCCCCGTTTGAGTACGAAAACTTTTACTGGTCTCTTCCCTTCAGGCTGCATTTAGGATTCGCCCTTCTTTTCTTCTCATTGGCAGCTACCATGGTCACCTTCACTGCAGCTGTTGTGCTCTTGATTCATCATCAAAAGATGTGGACAACGTCCCTCATTTATGTGGTTGCCCTTCTTCCTGTCTCTATGTTTGGGCTCTCGCAGTTTCCTTTGTACAACGGATTTCGCCAATGTGTGAAATGCATTTCAAAGAAAATTGGGGAGACTATAATACAACTTCAACTTTCCTTTAAAAGGAAAAAGGAAGCTGATAGAGAGGGAATATCAAAAATTGTGAAAAAAATGTTGAAGTCTCACCCTCAAGCAAAGGAGCCGCACGATACTGTAACTCACCAAAACATTTTGCACATGGCCATTAAGCATCGTCGGTTGGCCATCTTTAACATTATCGAAAAGAGTACATCGATAGCGCCAAAGTTGGCTTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 PGG

Protein Analysis

340

Amino Acids

38.33

Weight (kDa)

9.89

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 334
AatII GACGTC 1 cut(s) 530
AccI GTMKAC 1 cut(s) 141
AccII CGCG 1 cut(s) 202
AciI CCGC 1 cut(s) 902
AcoI YGGCCR 4 cut(s) 3, 24, 939, 960
AcuI CTGAAG 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 3 cut(s) 542, 743, 988
AfiI CCNNNNNNNGG 1 cut(s) 822
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 173, 777, 809, 877
AjiI CACGTC 1 cut(s) 224
AluBI AGCT 7 cut(s) 271, 332, 356, 383, 614, 638, 836
AluI AGCT 7 cut(s) 271, 332, 356, 383, 614, 638, 836
Alw21I GWGCWC 3 cut(s) 344, 509, 648
Alw26I GTCTC 5 cut(s) 320, 564, 715, 785, 885
Alw44I GTGCAC 1 cut(s) 505
AlwNI CAGNNNCTG 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 6 cut(s) 3, 24, 253, 372, 939, 960
ApaLI GTGCAC 1 cut(s) 505
ApeKI GCWGC 7 cut(s) 116, 353, 380, 383, 574, 611, 635
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 3 cut(s) 202, 265, 1000
AspS9I GGNCC 2 cut(s) 161, 253
AsuC2I CCSGG 2 cut(s) 399, 400
AsuHPI GGTGA 4 cut(s) 125, 616, 875, 911
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 509
BalI TGGCCA 4 cut(s) 5, 26, 941, 962
BanII GRGCYC 1 cut(s) 726
Bbv12I GWGCWC 3 cut(s) 344, 509, 648
BbvI GCAGC 7 cut(s) 103, 365, 370, 392, 561, 623, 647
BccI CCATC 3 cut(s) 35, 190, 971
BceAI ACGGC 2 cut(s) 408, 446
BcnI CCSGG 2 cut(s) 399, 400
BcoDI GTCTC 5 cut(s) 320, 564, 715, 785, 885
BfmI CTRYAG 2 cut(s) 138, 633
BfoI RGCGCY 1 cut(s) 1001
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 8 cut(s) 117, 354, 381, 384, 575, 612, 636, 902
BlsI GCNGC 8 cut(s) 118, 355, 382, 385, 576, 613, 637, 903
Bme1390I CCNGG 2 cut(s) 399, 400
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 161, 253
BmiI GGNNCC 3 cut(s) 396, 423, 900
BmrFI CCNGG 2 cut(s) 399, 400
BmsI GCATC 1 cut(s) 958
BpuEI CTTGAG 3 cut(s) 139, 416, 873
BpuMI CCSGG 2 cut(s) 399, 400
Bsa29I ATCGAT 2 cut(s) 56, 992
BsaHI GRCGYC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 5 cut(s) 348, 369, 398, 399, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 822
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 560
BseCI ATCGAT 2 cut(s) 56, 992
BseDI CCNNGG 5 cut(s) 348, 369, 398, 399, 618
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 822
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 7 cut(s) 103, 365, 370, 392, 561, 623, 647
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 202
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 6 cut(s) 5, 26, 255, 374, 941, 962
BshVI ATCGAT 2 cut(s) 56, 992
BsiEI CGRYCG 1 cut(s) 348
BsiHKAI GWGCWC 3 cut(s) 344, 509, 648
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 2 cut(s) 19, 399
BslFI GGGAC 2 cut(s) 514, 664
BslI CCNNNNNNNGG 1 cut(s) 822
BsmAI GTCTC 5 cut(s) 320, 564, 715, 785, 885
BsmFI GGGAC 2 cut(s) 514, 664
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 6 cut(s) 5, 26, 255, 374, 941, 962
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 4 cut(s) 344, 509, 648, 726
Bsp1407I TGTACA 1 cut(s) 741
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 1 cut(s) 902
BspANI GGCC 6 cut(s) 5, 26, 255, 374, 941, 962
BspCNI CTCAG 1 cut(s) 346
BspDI ATCGAT 2 cut(s) 56, 992
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 396, 423, 900
BspMAI CTGCAG 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 5 cut(s) 348, 369, 398, 399, 618
BssNI GRCGYC 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 618
Bst4CI ACNGT 3 cut(s) 349, 370, 913
Bst6I CTCTTC 2 cut(s) 278, 567
BstACI GRCGYC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 3 cut(s) 20, 24, 288
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 3 cut(s) 348, 369, 618
BstEII GGTNACC 1 cut(s) 622
BstENI CCTNNNNNAGG 1 cut(s) 820
BstF5I GGATG 1 cut(s) 201
BstFNI CGCG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 1001
BstHHI GCGC 3 cut(s) 202, 265, 1000
BstMAI GTCTC 5 cut(s) 320, 564, 715, 785, 885
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 4 cut(s) 362, 371, 380, 392
BstNSI RCATGY 2 cut(s) 125, 290
BstPI GGTNACC 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 397, 398
BstSFI CTRYAG 2 cut(s) 138, 633
BstSLI GKGCMC 1 cut(s) 509
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 7 cut(s) 103, 365, 370, 392, 561, 623, 647
Bsu15I ATCGAT 2 cut(s) 56, 992
BsuRI GGCC 6 cut(s) 5, 26, 255, 374, 941, 962
BsuTUI ATCGAT 2 cut(s) 56, 992
BtgI CCRYGG 3 cut(s) 348, 369, 618
BtrI CACGTC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 3 cut(s) 20, 24, 288
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 3 cut(s) 202, 265, 1000
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 161, 253
Cfr9I CCCGGG 1 cut(s) 398
ClaI ATCGAT 2 cut(s) 56, 992
CseI GACGC 1 cut(s) 152
Csp6I GTAC 3 cut(s) 541, 742, 987
CspCI CAANNNNNGTGG 2 cut(s) 650, 685
CviAII CATG 5 cut(s) 122, 235, 287, 619, 937
CviQI GTAC 3 cut(s) 541, 742, 987
DdeI CTNAG 1 cut(s) 333
DraI TTTAAA 1 cut(s) 820
DrdI GACNNNNNNGTC 1 cut(s) 334
DseDI GACNNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 4 cut(s) 3, 24, 939, 960
Eam1104I CTCTTC 2 cut(s) 278, 567
EarI CTCTTC 2 cut(s) 278, 567
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 726
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 622
EcoNI CCTNNNNNAGG 1 cut(s) 820
EcoO109I RGGNCCY 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 1 cut(s) 773
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 5 cut(s) 125, 238, 290, 622, 940
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FaqI GGGAC 2 cut(s) 514, 664
FatI CATG 5 cut(s) 121, 234, 286, 618, 936
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 8 cut(s) 117, 354, 381, 384, 575, 612, 636, 902
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 8 cut(s) 117, 354, 381, 384, 575, 612, 636, 902
GlaI GCGC 3 cut(s) 201, 264, 999
GluI GCNGC 8 cut(s) 117, 354, 381, 384, 575, 612, 636, 902
HaeII RGCGCY 1 cut(s) 1001
HaeIII GGCC 6 cut(s) 5, 26, 255, 374, 941, 962
HapII CCGG 2 cut(s) 19, 399
HgaI GACGC 1 cut(s) 152
HhaI GCGC 3 cut(s) 202, 265, 1000
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 5 cut(s) 125, 238, 290, 622, 940
Hin6I GCGC 3 cut(s) 200, 263, 998
HinP1I GCGC 3 cut(s) 200, 263, 998
HinfI GANTC 2 cut(s) 585, 652
HpaII CCGG 2 cut(s) 19, 399
HphI GGTGA 4 cut(s) 125, 616, 875, 911
Hpy166II GTNNAC 3 cut(s) 142, 507, 672
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 3 cut(s) 277, 523, 649
Hpy8I GTNNAC 3 cut(s) 142, 507, 672
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 4 cut(s) 577, 602, 637, 710
HpyCH4III ACNGT 3 cut(s) 349, 370, 913
HpyCH4IV ACGT 5 cut(s) 62, 223, 509, 527, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 371, 380, 392
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 5 cut(s) 62, 223, 509, 527, 677
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 5 cut(s) 125, 238, 290, 622, 940
HspAI GCGC 3 cut(s) 200, 263, 998
KroI GCCGGC 1 cut(s) 18
KroNI GCCGGC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 278
LmnI GCTCC 2 cut(s) 400, 898
Lsp1109I GCAGC 7 cut(s) 103, 365, 370, 392, 561, 623, 647
LweI GCATC 1 cut(s) 958
MaeII ACGT 5 cut(s) 62, 223, 509, 527, 677
MaeIII GTNAC 3 cut(s) 451, 622, 913
MboII GAAGA 6 cut(s) 194, 265, 478, 554, 592, 695
MfeI CAATTG 1 cut(s) 173
MhlI GDGCHC 4 cut(s) 344, 509, 648, 726
MlsI TGGCCA 4 cut(s) 5, 26, 941, 962
MluCI AATT 4 cut(s) 173, 185, 783, 858
MluNI TGGCCA 4 cut(s) 5, 26, 941, 962
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 692, 838, 897
Mox20I TGGCCA 4 cut(s) 5, 26, 941, 962
Mph1103I ATGCAT 1 cut(s) 773
MroNI GCCGGC 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 4 cut(s) 5, 26, 941, 962
MseI TTAA 5 cut(s) 33, 300, 819, 945, 969
MslI CAYNNNNRTG 1 cut(s) 689
Msp20I TGGCCA 4 cut(s) 5, 26, 941, 962
MspA1I CMGCKG 2 cut(s) 383, 638
MspI CCGG 2 cut(s) 19, 399
MspR9I CCNGG 2 cut(s) 399, 400
MunI CAATTG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 436
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 4 cut(s) 362, 371, 380, 392
NaeI GCCGGC 1 cut(s) 20
NciI CCSGG 2 cut(s) 399, 400
NcoI CCATGG 1 cut(s) 618
NgoMIV GCCGGC 1 cut(s) 18
NlaIII CATG 5 cut(s) 125, 238, 290, 622, 940
NlaIV GGNNCC 3 cut(s) 396, 423, 900
NmuCI GTSAC 2 cut(s) 451, 622
NsiI ATGCAT 1 cut(s) 773
NspI RCATGY 2 cut(s) 125, 290
PaeI GCATGC 1 cut(s) 290
PciI ACATGT 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 278
PctI GAATGC 1 cut(s) 436
PdiI GCCGGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 585, 652
PflFI GACNNNGTC 1 cut(s) 676
PkrI GCNGC 8 cut(s) 118, 355, 382, 385, 576, 613, 637, 903
PscI ACATGT 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 622
PspN4I GGNNCC 3 cut(s) 396, 423, 900
PspPI GGNCC 2 cut(s) 161, 253
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 676
PvuII CAGCTG 2 cut(s) 383, 638
RsaI GTAC 3 cut(s) 542, 743, 988
RsaNI GTAC 3 cut(s) 541, 742, 987
RseI CAYNNNNRTG 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 278
SaqAI TTAA 5 cut(s) 33, 300, 819, 945, 969
SatI GCNGC 8 cut(s) 117, 354, 381, 384, 575, 612, 636, 902
Sau96I GGNCC 2 cut(s) 161, 253
ScrFI CCNGG 2 cut(s) 399, 400
SduI GDGCHC 4 cut(s) 344, 509, 648, 726
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 2 cut(s) 138, 633
SinI GGWCC 1 cut(s) 161
SmaI CCCGGG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 3 cut(s) 154, 431, 888
SmoI CTYRAG 3 cut(s) 154, 431, 888
SphI GCATGC 1 cut(s) 290
Sse9I AATT 4 cut(s) 173, 185, 783, 858
SsiI CCGC 1 cut(s) 902
StyD4I CCNGG 2 cut(s) 397, 398
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 349, 370, 913
TaiI ACGT 5 cut(s) 65, 226, 512, 530, 680
TaqI TCGA 5 cut(s) 56, 276, 344, 978, 992
TasI AATT 4 cut(s) 173, 185, 783, 858
TatI WGTACW 2 cut(s) 741, 986
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 2 cut(s) 585, 652
Tru1I TTAA 5 cut(s) 33, 300, 819, 945, 969
Tru9I TTAA 5 cut(s) 33, 300, 819, 945, 969
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 2 cut(s) 451, 622
TseI GCWGC 7 cut(s) 116, 353, 380, 383, 574, 611, 635
Tsp45I GTSAC 2 cut(s) 451, 622
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 1 cut(s) 762
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 1 cut(s) 637
Tth111I GACNNNGTC 1 cut(s) 676
VneI GTGCAC 1 cut(s) 505
VpaK11BI GGWCC 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 820
XceI RCATGY 2 cut(s) 125, 290
XmaI CCCGGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 272
ZraI GACGTC 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.