Rorug04G0393700

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000724
Physical Location & Seq
Reverse (-)
56007325 .. 56008991
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0393700.1

Sequence Viewer

Length: 546 bp
ATGCTTAAAACTATGCCTAGGGCTAGAGATCGGGAGCCACTTGTTGTCGGGAGAGTGATCGGAGATGTTCTAGACCCGTTTACGAAGTCTGTGTCTTTGAGGATGACTTACAGTAATAACAGGGAGGTTACCAGTGGTTGTGAGCTTAAACCTTCTCATGTTGTTAACCGACCTCGCGTTGAGATGGGGGGAGATGATCTTAGGACTTTCTACACTCTGGTCATGGTAGATCCTGATGCACCCAGTCCAAGTGATCCCAACCTCAAGGAATATTTGCATTGGTTGGTGACTGATATTCCAGCAACAACTGCAGCAAGCTTTGGCCGAGAGCTTGTGAGCTATGAAACTCCACGGCCAGCGATGGGGATCCATCGCTTTGTTTCAGTTTTGTTTCGCCAATTGGGTAGGCAAACAGTATATGCTCCAGAATGGCGCCAAAATTTTAACACCAGACAGTTTGCTGAGAACTATAATCTTGGATCACCGGTGGCCGCTGTCTATTATAACTGCCAAAGGGAGAGCGGCTCTGGTGGAAGGAGAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

181

Amino Acids

20.51

Weight (kDa)

9.22

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 65 - 167 2.2e-11 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 432
AccBSI CCGCTC 1 cut(s) 522
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 492, 522
AclWI GGATC 5 cut(s) 224, 248, 361, 374, 487
AcoI YGGCCR 3 cut(s) 322, 353, 489
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 433
AfiI CCNNNNNNNGG 1 cut(s) 362
AgeI ACCGGT 1 cut(s) 484
AluBI AGCT 4 cut(s) 145, 318, 331, 339
AluI AGCT 4 cut(s) 145, 318, 331, 339
AlwI GGATC 5 cut(s) 224, 248, 361, 374, 487
AoxI GGCC 3 cut(s) 322, 353, 489
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 439
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AsiGI ACCGGT 1 cut(s) 484
AspA2I CCTAGG 1 cut(s) 17
AspLEI GCGC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 298, 474
AvrII CCTAGG 1 cut(s) 17
BamHI GGATCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 323
BccI CCATC 3 cut(s) 178, 355, 378
BceAI ACGGC 1 cut(s) 368
BfaI CTAG 3 cut(s) 18, 24, 71
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 436
BisI GCNGC 3 cut(s) 312, 492, 523
BlnI CCTAGG 1 cut(s) 17
BlsI GCNGC 3 cut(s) 313, 493, 524
BmiI GGNNCC 3 cut(s) 36, 368, 434
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 248
BsaBI GATNNNNATC 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 433
BsaJI CCNNGG 2 cut(s) 17, 350
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 132, 243
Bse8I GATNNNNATC 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 17, 350
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 132, 243
BseXI GCAGC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 324, 355, 491
BshNI GGYRCC 1 cut(s) 432
BshTI ACCGGT 1 cut(s) 484
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 1 cut(s) 362
BsnI GGCC 3 cut(s) 324, 355, 491
Bsp143I GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
BspACI CCGC 2 cut(s) 492, 522
BspANI GGCC 3 cut(s) 324, 355, 491
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 36, 368, 434
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 5 cut(s) 224, 248, 361, 374, 487
BspT107I GGYRCC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 522
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 2 cut(s) 132, 243
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 17, 350
BssMI GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
BssNI GRCGYC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 3 cut(s) 113, 415, 456
BstACI GRCGYC 1 cut(s) 433
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 316, 357
BstDEI CTNAG 2 cut(s) 200, 462
BstDSI CCRYGG 1 cut(s) 350
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 7 cut(s) 31, 60, 199, 232, 256, 369, 482
BstMBI GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstPI GGTNACC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 229, 366
BstYI RGATCY 2 cut(s) 229, 366
BsuRI GGCC 3 cut(s) 324, 355, 491
BtgI CCRYGG 1 cut(s) 350
BtgZI GCGATG 2 cut(s) 356, 374
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 316, 357
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 484
CspAI ACCGGT 1 cut(s) 484
CviAII CATG 2 cut(s) 158, 223
DdeI CTNAG 2 cut(s) 200, 462
DinI GGCGCC 1 cut(s) 434
DpnI GATC 7 cut(s) 30, 59, 198, 231, 255, 368, 481
DpnII GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
EaeI YGGCCR 3 cut(s) 322, 353, 489
Eco130I CCWWGG 1 cut(s) 17
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 434
EheI GGCGCC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 161, 226
FaiI YATR 9 cut(s) 14, 159, 224, 342, 418, 420, 471, 504, 544
FatI CATG 2 cut(s) 157, 222
Fnu4HI GCNGC 3 cut(s) 312, 492, 523
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 312, 492, 523
FspBI CTAG 3 cut(s) 18, 24, 71
GlaI GCGC 1 cut(s) 434
GluI GCNGC 3 cut(s) 312, 492, 523
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 436
HaeIII GGCC 3 cut(s) 324, 355, 491
HapII CCGG 1 cut(s) 485
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 2 cut(s) 161, 226
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 316
HpaI GTTAAC 1 cut(s) 166
HpaII CCGG 1 cut(s) 485
HphI GGTGA 2 cut(s) 298, 474
Hpy166II GTNNAC 2 cut(s) 81, 166
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 5 cut(s) 32, 49, 71, 233, 425
Hpy8I GTNNAC 2 cut(s) 81, 166
HpyAV CCTTC 2 cut(s) 162, 528
HpyCH4III ACNGT 3 cut(s) 113, 415, 456
HpyCH4V TGCA 3 cut(s) 239, 277, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 200, 462
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 2 cut(s) 161, 226
HspAI GCGC 1 cut(s) 433
KasI GGCGCC 1 cut(s) 432
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
LmnI GCTCC 2 cut(s) 34, 427
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 1 cut(s) 226
MaeI CTAG 3 cut(s) 18, 24, 71
MaeIII GTNAC 2 cut(s) 127, 286
MalI GATC 7 cut(s) 30, 59, 198, 231, 255, 368, 481
MbiI CCGCTC 1 cut(s) 522
MboI GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 2 cut(s) 229, 366
MluCI AATT 2 cut(s) 398, 439
Mly113I GGCGCC 1 cut(s) 433
MnlI CCTC 4 cut(s) 93, 118, 183, 272
MseI TTAA 4 cut(s) 6, 147, 165, 444
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 398
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 308
NarI GGCGCC 1 cut(s) 433
NdeII GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
NlaIII CATG 2 cut(s) 161, 226
NlaIV GGNNCC 3 cut(s) 36, 368, 434
NmeAIII GCCGAG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 484
PkrI GCNGC 3 cut(s) 313, 493, 524
PluTI GGCGCC 1 cut(s) 436
PsiI TTATAA 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 127
PspN4I GGNNCC 3 cut(s) 36, 368, 434
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 229, 366
SaqAI TTAA 4 cut(s) 6, 147, 165, 444
SatI GCNGC 3 cut(s) 312, 492, 523
Sau3AI GATC 7 cut(s) 28, 57, 196, 229, 253, 366, 479
SetI ASST 8 cut(s) 129, 147, 154, 175, 264, 320, 333, 341
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 434
SgrAI CRCCGGYG 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 398, 439
SsiI CCGC 2 cut(s) 492, 522
SspDI GGCGCC 1 cut(s) 432
SspI AATATT 1 cut(s) 272
SspMI CTAG 3 cut(s) 18, 24, 71
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 3 cut(s) 113, 415, 456
TasI AATT 2 cut(s) 398, 439
TauI GCSGC 2 cut(s) 494, 525
Tru1I TTAA 4 cut(s) 6, 147, 165, 444
Tru9I TTAA 4 cut(s) 6, 147, 165, 444
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 439
XbaI TCTAGA 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 17
XspI CTAG 3 cut(s) 18, 24, 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.