Rmu_sc0005788.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005788.1
OG0000724
Physical Location & Seq
Reverse (-)
2 .. 1433
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005788.1_g000001.1.cds

Sequence Viewer

Length: 967 bp
atggagcaagaaagcatcgcaataggaatcatcgaaataagcaggcataatgacgagctaatcacacaacaaaatgagtttggaaacactgctcttcatgaggctgcagcaattgattgtgtacgtgttgtggagaagttgttggaaaaggcaccggcattgctgtccattccaaacgagaatggggaaatgcctctctatacagcagctcactttggccagaaaaaaaatttcattttgctggctgaaaaactgaaaaacgatcaacatgctcttcatccccatttgttctccctgtatccttctaacgaccctgttacaaaaagtgggaagtactcttacgaccctgaacgcatacgcggtaccattcttcatgctgcaatacatgccgagttctttgagcttgcacttttgatagctagaaagccggagtatgcaaaacttgttctactaaaatacaaaaatttgaaaacgcctcttcagctcctctcatccaattcttcagcattcaagagtggaatgaaatgtagactgatcaagaggttcatttacaactgtgctcaatacgaagatgctaaagaggaagatgttcatgaacaaaattccagtgatgatagtcatgtacaaagttccagtagagccactctgtttctacggcgaatcatgtcttcagaatggccaacgatgaagaagattcatgacgaaaggaaaaggcatgaacttgctttagaactaggcaagtttttaattgcagaagacttttcatggcacatcaaagcgccatcccagtcagagactccagatatcccattgttcattgcaacaagcaatggaatattagaaattgtggaggagacacttagagtctaccctttgtcacttgagtatacaaacaaagagaagcaaaacatactgcacctcgctatattgcaccgtcagccggacatctttgatgtgacgaagaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

322

Amino Acids

36.89

Weight (kDa)

6.44

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 2 cut(s) 151, 362
AccI GTMKAC 3 cut(s) 529, 867, 887
AccII CGCG 1 cut(s) 360
AciI CCGC 1 cut(s) 360
AcoI YGGCCR 2 cut(s) 217, 677
AcsI RAATTY 3 cut(s) 229, 463, 601
AcuI CTGAAG 3 cut(s) 464, 486, 654
AfaI GTAC 4 cut(s) 123, 335, 364, 624
AfiI CCNNNNNNNGG 1 cut(s) 940
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 2 cut(s) 469, 511
AluBI AGCT 5 cut(s) 58, 209, 403, 419, 484
AluI AGCT 5 cut(s) 58, 209, 403, 419, 484
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 2 cut(s) 788, 848
AoxI GGCC 2 cut(s) 217, 677
ApeKI GCWGC 4 cut(s) 104, 107, 206, 377
ApoI RAATTY 3 cut(s) 229, 463, 601
Asp700I GAANNNNTTC 1 cut(s) 588
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 781
BalI TGGCCA 2 cut(s) 219, 679
BanI GGYRCC 2 cut(s) 151, 362
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbsI GAAGAC 2 cut(s) 660, 762
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 4 cut(s) 91, 119, 218, 364
BccI CCATC 1 cut(s) 790
BceAI ACGGC 1 cut(s) 671
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciVI GTATCC 1 cut(s) 309
BclI TGATCA 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 788, 848
BfaI CTAG 2 cut(s) 420, 734
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 782
BfuI GTATCC 1 cut(s) 309
BisI GCNGC 4 cut(s) 105, 108, 207, 378
BlsI GCNGC 4 cut(s) 106, 109, 208, 379
BmcAI AGTACT 1 cut(s) 335
BmiI GGNNCC 2 cut(s) 153, 364
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 2 cut(s) 24, 562
BmuI ACTGGG 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 660, 762
BpmI CTGGAG 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 125
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 606, 633, 787
Bse3DI GCAATG 3 cut(s) 158, 816, 835
BseGI GGATG 3 cut(s) 277, 491, 782
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMI GCAATG 3 cut(s) 158, 816, 835
BseNI ACTGG 3 cut(s) 606, 633, 787
BseRI GAGGAG 2 cut(s) 476, 866
BseXI GCAGC 4 cut(s) 91, 119, 218, 364
BsgI GTGCAG 1 cut(s) 899
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 2 cut(s) 219, 679
BshNI GGYRCC 2 cut(s) 151, 362
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 3 cut(s) 155, 428, 941
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 2 cut(s) 788, 848
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 2 cut(s) 219, 679
Bsp1286I GDGCHC 1 cut(s) 562
Bsp1407I TGTACA 1 cut(s) 622
Bsp143I GATC 2 cut(s) 262, 534
BspACI CCGC 1 cut(s) 360
BspANI GGCC 2 cut(s) 219, 679
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 3 cut(s) 97, 592, 697
BspLI GGNNCC 2 cut(s) 153, 364
BspMAI CTGCAG 1 cut(s) 109
BspQI GCTCTTC 2 cut(s) 99, 279
BspT107I GGYRCC 2 cut(s) 151, 362
BsrDI GCAATG 3 cut(s) 158, 816, 835
BsrFI RCCGGY 1 cut(s) 154
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 3 cut(s) 606, 633, 787
BssAI RCCGGY 1 cut(s) 154
BssMI GATC 2 cut(s) 262, 534
BssNAI GTATAC 1 cut(s) 888
Bst1107I GTATAC 1 cut(s) 888
Bst4CI ACNGT 2 cut(s) 557, 935
Bst6I CTCTTC 4 cut(s) 99, 279, 483, 956
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 44, 243, 405
BstDEI CTNAG 1 cut(s) 860
BstF5I GGATG 3 cut(s) 277, 491, 782
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 1 cut(s) 782
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 2 cut(s) 265, 537
BstMAI GTCTC 2 cut(s) 788, 848
BstMBI GATC 2 cut(s) 262, 534
BstMWI GCNNNNNNNGC 3 cut(s) 386, 481, 937
BstNSI RCATGY 2 cut(s) 272, 389
BstSFI CTRYAG 1 cut(s) 105
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 91, 119, 218, 364
BstV2I GAAGAC 2 cut(s) 660, 762
BstZ17I GTATAC 1 cut(s) 888
BsuI GTATCC 1 cut(s) 309
BsuRI GGCC 2 cut(s) 219, 679
BtsCI GGATG 3 cut(s) 277, 491, 782
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 613
Cac8I GCNNGC 3 cut(s) 44, 243, 405
CciI TCATGA 3 cut(s) 97, 592, 697
CfoI GCGC 1 cut(s) 781
Cfr10I RCCGGY 1 cut(s) 154
Csp6I GTAC 4 cut(s) 122, 334, 363, 623
CviQI GTAC 4 cut(s) 122, 334, 363, 623
DdeI CTNAG 1 cut(s) 860
DpnI GATC 2 cut(s) 264, 536
DpnII GATC 2 cut(s) 262, 534
EaeI YGGCCR 2 cut(s) 217, 677
Eam1104I CTCTTC 4 cut(s) 99, 279, 483, 956
EarI CTCTTC 4 cut(s) 99, 279, 483, 956
Eco32I GATATC 1 cut(s) 805
Eco57I CTGAAG 3 cut(s) 464, 486, 654
EcoRV GATATC 1 cut(s) 805
FbaI TGATCA 1 cut(s) 534
FblI GTMKAC 3 cut(s) 529, 867, 887
Fnu4HI GCNGC 4 cut(s) 105, 108, 207, 378
FokI GGATG 3 cut(s) 264, 478, 769
Fsp4HI GCNGC 4 cut(s) 105, 108, 207, 378
FspBI CTAG 2 cut(s) 420, 734
GlaI GCGC 1 cut(s) 780
GluI GCNGC 4 cut(s) 105, 108, 207, 378
GsuI CTGGAG 1 cut(s) 783
HaeII RGCGCY 1 cut(s) 782
HaeIII GGCC 2 cut(s) 219, 679
HapII CCGG 3 cut(s) 155, 428, 941
HhaI GCGC 1 cut(s) 781
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HinfI GANTC 5 cut(s) 27, 660, 694, 796, 864
HpaII CCGG 3 cut(s) 155, 428, 941
Hpy166II GTNNAC 4 cut(s) 122, 530, 868, 888
Hpy188I TCNGA 2 cut(s) 673, 793
Hpy188III TCNNGA 6 cut(s) 98, 511, 538, 593, 698, 800
Hpy8I GTNNAC 4 cut(s) 122, 530, 868, 888
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 557, 935
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 8 cut(s) 107, 380, 407, 437, 752, 821, 916, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 481, 937
HpyF3I CTNAG 1 cut(s) 860
HpySE526I ACGT 1 cut(s) 124
HspAI GCGC 1 cut(s) 779
KpnI GGTACC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 2 cut(s) 262, 534
LguI GCTCTTC 2 cut(s) 99, 279
LmnI GCTCC 2 cut(s) 4, 489
Lsp1109I GCAGC 4 cut(s) 91, 119, 218, 364
LweI GCATC 2 cut(s) 24, 562
MaeI CTAG 2 cut(s) 420, 734
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 3 cut(s) 316, 876, 955
MalI GATC 2 cut(s) 264, 536
MboI GATC 2 cut(s) 262, 534
MfeI CAATTG 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 562
MlsI TGGCCA 2 cut(s) 219, 679
MluCI AATT 7 cut(s) 111, 229, 463, 496, 601, 747, 843
MluNI TGGCCA 2 cut(s) 219, 679
MlyI GAGTC 2 cut(s) 790, 873
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 9 cut(s) 94, 204, 486, 497, 534, 574, 844, 929, 957
Mox20I TGGCCA 2 cut(s) 219, 679
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 2 cut(s) 219, 679
MseI TTAA 1 cut(s) 746
Msp20I TGGCCA 2 cut(s) 219, 679
MspI CCGG 3 cut(s) 155, 428, 941
MunI CAATTG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 506
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 3 cut(s) 386, 481, 937
NdeII GATC 2 cut(s) 262, 534
NlaIV GGNNCC 2 cut(s) 153, 364
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 876, 955
NspI RCATGY 2 cut(s) 272, 389
PagI TCATGA 3 cut(s) 97, 592, 697
PciSI GCTCTTC 2 cut(s) 99, 279
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 27, 660, 694
PkrI GCNGC 4 cut(s) 106, 109, 208, 379
PleI GAGTC 2 cut(s) 790, 872
PpsI GAGTC 2 cut(s) 790, 872
Ppu21I YACGTR 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 153, 364
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 4 cut(s) 123, 335, 364, 624
RsaNI GTAC 4 cut(s) 122, 334, 363, 623
SapI GCTCTTC 2 cut(s) 99, 279
SaqAI TTAA 1 cut(s) 746
SatI GCNGC 4 cut(s) 105, 108, 207, 378
Sau3AI GATC 2 cut(s) 262, 534
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 2 cut(s) 790, 873
SduI GDGCHC 1 cut(s) 562
SetI ASST 8 cut(s) 60, 127, 211, 405, 421, 486, 545, 921
SfaNI GCATC 2 cut(s) 24, 562
SfcI CTRYAG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 7 cut(s) 111, 229, 463, 496, 601, 747, 843
SsiI CCGC 1 cut(s) 360
SspI AATATT 1 cut(s) 837
SspMI CTAG 2 cut(s) 420, 734
TaaI ACNGT 2 cut(s) 557, 935
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 33
TasI AATT 7 cut(s) 111, 229, 463, 496, 601, 747, 843
TatI WGTACW 2 cut(s) 333, 622
TfiI GAWTC 3 cut(s) 27, 660, 694
Tru1I TTAA 1 cut(s) 746
Tru9I TTAA 1 cut(s) 746
TscAI CASTG 2 cut(s) 94, 613
TseFI GTSAC 2 cut(s) 876, 955
TseI GCWGC 4 cut(s) 104, 107, 206, 377
Tsp45I GTSAC 2 cut(s) 876, 955
TspRI CASTG 2 cut(s) 94, 613
XapI RAATTY 3 cut(s) 229, 463, 601
XceI RCATGY 2 cut(s) 272, 389
XmiI GTMKAC 3 cut(s) 529, 867, 887
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 2 cut(s) 420, 734
ZrmI AGTACT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.