Rroxscaffold_1G00071340

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000724
Physical Location & Seq
Forward (+)
92210711 .. 92211523
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071340.1

Sequence Viewer

Length: 813 bp
ATGGCAGAAAATAACAGCATAAATCCCAAACACCTTTATCAAAGCCTAAAGAATGGTGACAAAACCAAAGTGATGGAATATTATAGAACTATGTCTGATGATGAAAGGTTGAAGCTCATTCCAACAGTGAACAAGGATACAATCCTGCATTTAGCAATTTACATGGGGCAGCAAGACATAGCAAAAGAAATCGTCAAAAGATGTTCCGGGGGTTCTGATGATAAGCTACTTATACAGAAGAATGCCCCCGGAAACACAGTTCTGCACGAGGCTGCAGCAACAAGCATGACAAGCCTTGTGATGGAGTTGTTACAAAAGGCACCAACATTGTTGTCTACTCCTAACAGCAAAAAGGAAATGCCTCTCTATACAGCAGCTTTCTACGGCCAGACCGACATGTTCAAGTTGTTGGCGCAAGAAGTAGACACACACGAATCTAACAATCTTGATCTCCATTTGTGCCCCAATAAAGTTGGCACTACCATTCTTCATGCGGCAATACATGGCGAGTTCTTTGGTAATTACTATTTGATCAATTCATTTTCCACCTGGCAATGCACAGTAATATCTGATGTACGTTGTCCTAGTTCTTGTTTTCTTTTTCTTGATCATGTTCAAAACTTTAATGCAGATCTTGCACTTCTGATAGCGAAGAAGTATGGGAATCAGTTAGTCATGCAAAAGGACGAAAATCAGATGACAGGCCTTCAGCTGCTTTCGCGTAATCCTTACACCTTCAGGAGTGGAATCAATTATGGACCAATCGAGAGGATGATTTATTACTGTATGCATATATACTATCCTTTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

270

Amino Acids

30.7

Weight (kDa)

6.74

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 88 - 170 1.4e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000724)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01330 FvH4_3g01340
malus_domestica MD05G1025600.v1.1 MD05G1025700.v1.1 MD05G1026000.v1.1 MD05G1353100.v1.1 MD05G1353500.v1.1 MD05G1353600.v1.1 MD05G1353800.v1.1 MD05G1354800.v1.1 MD09G1059700.v1.1 MD09G1059800.v1.1 MD10G1327600.v1.1 MD10G1327700.v1.1 MD10G1327800.v1.1
prunus_persica Prupe.4G014100_v2.0.a1 Prupe.4G014100_v2.0.a1 Prupe.4G014200_v2.0.a1 Prupe.4G014300_v2.0.a1 Prupe.4G014400_v2.0.a1 Prupe.7G089200_v2.0.a1 Prupe.8G021100_v2.0.a1 Prupe.8G029400_v2.0.a1 Prupe.8G029600_v2.0.a1 Prupe.8G029900_v2.0.a1 Prupe.8G030300_v2.0.a1
pyrus_communis pycom05g01740 pycom05g01780 pycom05g32030 pycom05g32040 pycom05g32050 pycom05g32070 pycom05g32080 pycom05g32090 pycom10g27710 pycom10g27740 pycom10g27760 pycom13g16890 pycom17g07270 pycom17g07280 pycom17g07290
rosa_chinensis RchiOBHm_Chr5g0001901 RchiOBHm_Chr5g0001921 RchiOBHm_Chr5g0001941
rosa_laevigata RLG00000030980 RLG00000030981 RLG00000030984
rosa_multiflora Rmu_sc0000378.1_g000012 Rmu_sc0000378.1_g000015 Rmu_sc0005788.1_g000001 Rmu_sc0006008.1_g000002
rosa_roxburghii Rroxscaffold_1G00071320 Rroxscaffold_1G00071340 Rroxscaffold_1G00071350 Rroxscaffold_1G00074390 Rroxscaffold_1G00074410 Rroxscaffold_1G00074460
rosa_rugosa Rorug04G0393700 Rorug04G0393800 Rorug04G0393900 Rorug04G0394000
rosa_samantha Rh5AG015000 Rh5BG018400 Rh5BG018500 Rh5BG018600 Rh5BG018700 Rh5CG016100 Rh5DG016600 Rh5DG016800 Rh5DG017000
rosa_wichuraiana Rw5G001450 Rw5G001460 Rw5G001480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccI GTMKAC 2 cut(s) 335, 423
AccII CGCG 1 cut(s) 721
AciI CCGC 1 cut(s) 494
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 2 cut(s) 692, 721
AfaI GTAC 1 cut(s) 576
AfiI CCNNNNNNNGG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 112, 403, 617
AjnI CCWGG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
AluBI AGCT 4 cut(s) 115, 226, 377, 712
AluI AGCT 4 cut(s) 115, 226, 377, 712
AoxI GGCC 2 cut(s) 385, 703
ApeKI GCWGC 5 cut(s) 169, 272, 275, 374, 712
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 1 cut(s) 758
AsuC2I CCSGG 2 cut(s) 208, 249
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 464
BanI GGYRCC 1 cut(s) 319
BauI CACGAG 1 cut(s) 266
BbvI GCAGC 5 cut(s) 181, 259, 287, 386, 699
BccI CCATC 2 cut(s) 67, 295
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 550
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 2 cut(s) 531, 607
BcnI CCSGG 2 cut(s) 208, 249
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 130
BglII AGATCT 1 cut(s) 631
BisI GCNGC 6 cut(s) 170, 273, 276, 375, 495, 713
BlsI GCNGC 6 cut(s) 171, 274, 277, 376, 496, 714
Bme1390I CCNGG 3 cut(s) 208, 249, 550
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 758
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 208, 249, 550
BpuMI CCSGG 2 cut(s) 208, 249
BsaJI CCNNGG 2 cut(s) 207, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse3DI GCAATG 1 cut(s) 560
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 207, 247
BseGI GGATG 1 cut(s) 777
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 5 cut(s) 181, 259, 287, 386, 699
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 721
BshFI GGCC 2 cut(s) 387, 705
BshNI GGYRCC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 207, 249
BslI CCNNNNNNNGG 1 cut(s) 301
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 387, 705
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 4 cut(s) 448, 531, 607, 631
BspACI CCGC 1 cut(s) 494
BspANI GGCC 2 cut(s) 387, 705
BspFNI CGCG 1 cut(s) 721
BspLI GGNNCC 1 cut(s) 321
BspMAI CTGCAG 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 207, 247
BssMI GATC 4 cut(s) 448, 531, 607, 631
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 4 cut(s) 127, 259, 562, 785
BstAPI GCANNNNNTGC 1 cut(s) 635
BstF5I GGATG 1 cut(s) 777
BstFNI CGCG 1 cut(s) 721
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 4 cut(s) 451, 534, 610, 634
BstMBI GATC 4 cut(s) 448, 531, 607, 631
BstMWI GCNNNNNNNGC 3 cut(s) 291, 635, 718
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 3 cut(s) 206, 247, 548
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 464
BstUI CGCG 1 cut(s) 721
BstV1I GCAGC 5 cut(s) 181, 259, 287, 386, 699
BstX2I RGATCY 1 cut(s) 631
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 631
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 387, 705
BtsCI GGATG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 758
Csp6I GTAC 1 cut(s) 575
CviAII CATG 7 cut(s) 163, 286, 397, 491, 503, 611, 676
CviJI RGCY 9 cut(s) 45, 115, 226, 272, 294, 377, 387, 705, 712
CviKI_1 RGCY 9 cut(s) 45, 115, 226, 272, 294, 377, 387, 705, 712
CviQI GTAC 1 cut(s) 575
DpnI GATC 4 cut(s) 450, 533, 609, 633
DpnII GATC 4 cut(s) 448, 531, 607, 631
EaeI YGGCCR 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 2 cut(s) 692, 721
EcoRII CCWGG 1 cut(s) 548
EcoT22I ATGCAT 1 cut(s) 792
FaeI CATG 7 cut(s) 166, 289, 400, 494, 506, 614, 679
FatI CATG 7 cut(s) 162, 285, 396, 490, 502, 610, 675
FbaI TGATCA 2 cut(s) 531, 607
FblI GTMKAC 2 cut(s) 335, 423
Fnu4HI GCNGC 6 cut(s) 170, 273, 276, 375, 495, 713
FokI GGATG 1 cut(s) 784
Fsp4HI GCNGC 6 cut(s) 170, 273, 276, 375, 495, 713
FspBI CTAG 1 cut(s) 585
GlaI GCGC 1 cut(s) 414
GluI GCNGC 6 cut(s) 170, 273, 276, 375, 495, 713
HaeIII GGCC 2 cut(s) 387, 705
HapII CCGG 2 cut(s) 207, 249
HhaI GCGC 1 cut(s) 415
Hin1II CATG 7 cut(s) 166, 289, 400, 494, 506, 614, 679
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 3 cut(s) 434, 664, 747
HpaII CCGG 2 cut(s) 207, 249
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 130, 336, 424
Hpy188I TCNGA 5 cut(s) 97, 217, 571, 645, 696
Hpy188III TCNNGA 4 cut(s) 446, 605, 739, 766
Hpy8I GTNNAC 3 cut(s) 130, 336, 424
HpyAV CCTTC 2 cut(s) 716, 745
HpyCH4III ACNGT 4 cut(s) 127, 259, 562, 785
HpyCH4IV ACGT 1 cut(s) 577
HpyCH4V TGCA 8 cut(s) 148, 265, 275, 558, 629, 638, 679, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 291, 635, 718
HpySE526I ACGT 1 cut(s) 577
Hsp92II CATG 7 cut(s) 166, 289, 400, 494, 506, 614, 679
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 2 cut(s) 531, 607
Kzo9I GATC 4 cut(s) 448, 531, 607, 631
LpnPI CCDG 8 cut(s) 158, 220, 262, 401, 535, 562, 687, 724
Lsp1109I GCAGC 5 cut(s) 181, 259, 287, 386, 699
MaeI CTAG 1 cut(s) 585
MaeII ACGT 1 cut(s) 577
MaeIII GTNAC 2 cut(s) 56, 309
MalI GATC 4 cut(s) 450, 533, 609, 633
MboI GATC 4 cut(s) 448, 531, 607, 631
MboII GAAGA 3 cut(s) 250, 479, 664
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 4 cut(s) 156, 520, 535, 751
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 3 cut(s) 262, 372, 762
Mph1103I ATGCAT 1 cut(s) 792
MseI TTAA 2 cut(s) 624, 811
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 2 cut(s) 207, 249
MspR9I CCNGG 3 cut(s) 208, 249, 550
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 550
MvnI CGCG 1 cut(s) 721
MwoI GCNNNNNNNGC 3 cut(s) 291, 635, 718
NciI CCSGG 2 cut(s) 208, 249
NdeII GATC 4 cut(s) 448, 531, 607, 631
NlaIII CATG 7 cut(s) 166, 289, 400, 494, 506, 614, 679
NlaIV GGNNCC 1 cut(s) 321
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 1 cut(s) 400
PceI AGGCCT 1 cut(s) 705
PciI ACATGT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 434, 664, 747
PkrI GCNGC 6 cut(s) 171, 274, 277, 376, 496, 714
PscI ACATGT 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 758
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 1 cut(s) 576
RsaNI GTAC 1 cut(s) 575
SaqAI TTAA 2 cut(s) 624, 811
SatI GCNGC 6 cut(s) 170, 273, 276, 375, 495, 713
Sau3AI GATC 4 cut(s) 448, 531, 607, 631
Sau96I GGNCC 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 208, 249, 550
SduI GDGCHC 1 cut(s) 464
SetI ASST 9 cut(s) 36, 110, 117, 228, 379, 551, 580, 714, 737
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 758
Sse9I AATT 4 cut(s) 156, 520, 535, 751
SseBI AGGCCT 1 cut(s) 705
SsiI CCGC 1 cut(s) 494
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 585
StuI AGGCCT 1 cut(s) 705
StyD4I CCNGG 3 cut(s) 206, 247, 548
TaaI ACNGT 4 cut(s) 127, 259, 562, 785
TaiI ACGT 1 cut(s) 580
TaqI TCGA 1 cut(s) 765
TaqII GACCGA 1 cut(s) 407
TasI AATT 4 cut(s) 156, 520, 535, 751
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 434, 664, 747
Tru1I TTAA 2 cut(s) 624, 811
Tru9I TTAA 2 cut(s) 624, 811
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 5 cut(s) 169, 272, 275, 374, 712
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 3 cut(s) 117, 479, 528
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 758
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 2 cut(s) 335, 423
XspI CTAG 1 cut(s) 585
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.