MD10G1181800.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
27500759 .. 27501202
444 bp
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UTR
Exon/CDS
Intron
MD10G1181800.v1.1.491

Sequence Viewer

Length: 444 bp
ATGGTTCTATATGGAAGTTCGGATACGAGAATCAAGGAACAATTTATGTCGGAAGTTAGTACAATCGGAAGAACCCATCACTTCAATCTGGTCTGTCTTTATGGTTTCTGCTATGAGGAACACCTCAGAGCACTTGTTTACGAGTACATGGGAAATGGATCGCTTGAAAAGTACTTATTTCATACCAACATGGTGGCGTTAGGATTTGAAAAGCTTCATGAGATTGCTGTGGGGACAACAAGAGGAATCACTTACTTGCACGAAGAATGCCAACAACGAATTATTCATTGTGACATAAAGCCAGAAAACATTCTTTTGGATGCAAACTTCTTTCCAAAAGTAGCTGATTTCGGTTTGGCCAAGTTGTGTAACAGGGAAAATACTCATATAACCCTGACAGGGGGAGAGGGACTCCGGGTTATTCTGCACCGAAAGTTTGGCTGA

Protein Analysis

148

Amino Acids

16.89

Weight (kDa)

6.49

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 8 - 129 8.1e-24 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 10 - 129 2.3e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 166
AcoI YGGCCR 1 cut(s) 357
AfaI GTAC 3 cut(s) 61, 146, 173
AfiI CCNNNNNNNGG 2 cut(s) 399, 400
AgsI TTSAA 3 cut(s) 85, 167, 209
AluBI AGCT 2 cut(s) 214, 344
AluI AGCT 2 cut(s) 214, 344
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 357
Asp700I GAANNNNTTC 2 cut(s) 213, 309
AsuC2I CCSGG 1 cut(s) 416
BalI TGGCCA 1 cut(s) 359
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 1 cut(s) 84
BciVI GTATCC 1 cut(s) 16
BcnI CCSGG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 16
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 416
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpuMI CCSGG 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 400
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 2 cut(s) 399, 400
BseMII CTCAG 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 410
BshFI GGCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 415
BslFI GGGAC 2 cut(s) 247, 423
BslI CCNNNNNNNGG 2 cut(s) 399, 400
BsmFI GGGAC 2 cut(s) 247, 423
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 138
BspHI TCATGA 1 cut(s) 217
BspPI GGATC 1 cut(s) 166
BssMI GATC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 414
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 325
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 3 cut(s) 60, 145, 172
CviAII CATG 3 cut(s) 148, 190, 218
CviJI RGCY 5 cut(s) 214, 301, 344, 359, 441
CviKI_1 RGCY 5 cut(s) 214, 301, 344, 359, 441
CviQI GTAC 3 cut(s) 60, 145, 172
DdeI CTNAG 1 cut(s) 125
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 357
FaeI CATG 3 cut(s) 151, 193, 221
FaqI GGGAC 2 cut(s) 247, 423
FatI CATG 3 cut(s) 147, 189, 217
FokI GGATG 1 cut(s) 332
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 415
Hin1II CATG 3 cut(s) 151, 193, 221
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 3 cut(s) 30, 246, 411
HpaII CCGG 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 4 cut(s) 22, 52, 68, 128
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4V TGCA 3 cut(s) 259, 323, 427
HpyF3I CTNAG 1 cut(s) 125
Hsp92II CATG 3 cut(s) 151, 193, 221
Kzo9I GATC 1 cut(s) 158
LpnPI CCDG 6 cut(s) 74, 315, 358, 384, 407, 428
LweI GCATC 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 290, 368
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 81, 275
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 2 cut(s) 41, 279
MluNI TGGCCA 1 cut(s) 359
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 109, 134, 236, 400
Mox20I TGGCCA 1 cut(s) 359
MroXI GAANNNNTTC 2 cut(s) 213, 309
MscI TGGCCA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 416
NdeII GATC 1 cut(s) 158
NlaIII CATG 3 cut(s) 151, 193, 221
NmuCI GTSAC 1 cut(s) 290
PagI TCATGA 1 cut(s) 217
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 2 cut(s) 213, 309
PfeI GAWTC 2 cut(s) 30, 246
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
RsaI GTAC 3 cut(s) 61, 146, 173
RsaNI GTAC 3 cut(s) 60, 145, 172
Sau3AI GATC 1 cut(s) 158
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 1 cut(s) 133
SetI ASST 3 cut(s) 126, 216, 346
SfaNI GCATC 1 cut(s) 310
Sse9I AATT 2 cut(s) 41, 279
StyD4I CCNGG 1 cut(s) 414
TasI AATT 2 cut(s) 41, 279
TatI WGTACW 3 cut(s) 59, 144, 171
TfiI GAWTC 2 cut(s) 30, 246
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 170, 206, 275
XmnI GAANNNNTTC 2 cut(s) 213, 309
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.