RchiOBHm_Chr4g0401651
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19864887 .. 19866887
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37355

Sequence Viewer

Length: 1110 bp
ATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCGTCAGGTTTACTTCTCTACAACTTCGGATTGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTGAATCTAGTAATGGAACACTTGTGGCAGTGAAGGCTCTAAGTGGTACCTCGGACAAGAGAATTGATGAGCAATTCATGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGACACCTCAGAGCGCTTGTTTATGAGTATATGTCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAAGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGGAAATATTCTTTTAGATGTGAATTTCTTCCCTAAAGTTGCTGATTTCGGTTTGGCCAAGCTGTGCAACAGGGACAATACTCATATATCAATGACAGGTGGGAGGGGAACTCCTGGTTATGCTGCACCAGAACTTTGGCTGGGGCTTCCTATAACCCACAAATGTGATGTGTACATGTACATCTTTAGATTAATGCTGTTATTCGAGATTATAGGTAGAAGAAGAAACCTTGACCTTAATCTTCCAGAGAGCCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGACAACTAATGGTAGTATGTGGTATAGAGGAAAAAGATAGAGAGGCAGTAGAGAGCAATGTTTTAAAACGCGGAGGCGTACCTGAGGCGTTTTCGGGAGAGCCTCACCAAGGCTGTAGGTCCGAGTTGAGGCCTTTAATGAGTGTTGCGGTGAAGATGTTGGAAGGAGAAATTGATATTCCTAGACCTTCAATTAATCCATTCCAGCACTTGCCAGACACTCCTATCATGGCAGCATATAGCACTAGTGCCTTCGACACGGATTCCTCTCAAACAATAACTGGATATAACATTGTTTGTAAGACTCCCATCATGAAAAAGTATGAGATTGAAATAGCGTCTACTTAA

Protein Analysis

369

Amino Acids

41.68

Weight (kDa)

6.47

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 28 - 223 2.7e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 211 7.7e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 1103
AccII CGCG 1 cut(s) 834
AciI CCGC 3 cut(s) 209, 834, 911
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 1 cut(s) 481
AfaI GTAC 5 cut(s) 175, 220, 632, 638, 843
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 3 cut(s) 731, 872, 891
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 3 cut(s) 749, 954, 1094
AhlI ACTAGT 1 cut(s) 1007
AjnI CCWGG 2 cut(s) 457, 571
AjuI GAANNNNNNNTTGG 4 cut(s) 369, 401, 705, 737
AleI CACNNNNGTG 1 cut(s) 621
AluBI AGCT 4 cut(s) 370, 395, 520, 752
AluI AGCT 4 cut(s) 370, 395, 520, 752
Alw26I GTCTC 2 cut(s) 260, 271
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 2 cut(s) 513, 893
ApeKI GCWGC 3 cut(s) 430, 581, 995
ApoI RAATTY 1 cut(s) 481
AseI ATTAAT 2 cut(s) 650, 957
Asp700I GAANNNNTTC 2 cut(s) 369, 485
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 882
AsuHPI GGTGA 5 cut(s) 76, 140, 767, 860, 925
AsuII TTCGAA 1 cut(s) 363
AvaII GGWCC 1 cut(s) 882
AxyI CCTNAGG 1 cut(s) 846
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 442, 568, 1007
BccI CCATC 2 cut(s) 729, 1079
BciT130I CCWGG 2 cut(s) 459, 573
BcoDI GTCTC 2 cut(s) 260, 271
BcuI ACTAGT 1 cut(s) 1007
BfaI CTAG 5 cut(s) 135, 396, 761, 945, 1008
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 1 cut(s) 293
BisI GCNGC 3 cut(s) 431, 582, 996
BlsI GCNGC 3 cut(s) 432, 583, 997
Bme1390I CCNGG 2 cut(s) 459, 573
Bme18I GGWCC 1 cut(s) 882
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 459, 573
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu14I TTCGAA 1 cut(s) 363
BsaJI CCNNGG 5 cut(s) 177, 259, 340, 725, 871
Bsc4I CCNNNNNNNGG 3 cut(s) 731, 872, 891
Bse1I ACTGG 2 cut(s) 722, 1048
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 2 cut(s) 459, 573
BseDI CCNNGG 5 cut(s) 177, 259, 340, 725, 871
BseGI GGATG 1 cut(s) 740
BseLI CCNNNNNNNGG 3 cut(s) 731, 872, 891
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 2 cut(s) 298, 837
BseNI ACTGG 2 cut(s) 722, 1048
BseXI GCAGC 3 cut(s) 442, 568, 1007
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 1 cut(s) 834
BshFI GGCC 2 cut(s) 515, 895
BshNI GGYRCC 1 cut(s) 173
BslFI GGGAC 2 cut(s) 403, 545
BslI CCNNNNNNNGG 3 cut(s) 731, 872, 891
BsmAI GTCTC 2 cut(s) 260, 271
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 403, 545
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 2 cut(s) 515, 895
Bsp119I TTCGAA 1 cut(s) 363
Bsp1407I TGTACA 2 cut(s) 630, 636
Bsp19I CCATGG 2 cut(s) 259, 340
BspACI CCGC 3 cut(s) 209, 834, 911
BspANI GGCC 2 cut(s) 515, 895
BspCNI CTCAG 2 cut(s) 297, 838
BspFNI CGCG 1 cut(s) 834
BspHI TCATGA 2 cut(s) 373, 1074
BspLI GGNNCC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 826
BsrGI TGTACA 2 cut(s) 630, 636
BsrI ACTGG 2 cut(s) 722, 1048
BssECI CCNNGG 5 cut(s) 177, 259, 340, 725, 871
BssT1I CCWWGG 4 cut(s) 259, 340, 725, 871
Bst2UI CCWGG 2 cut(s) 459, 573
BstAUI TGTACA 2 cut(s) 630, 636
BstBI TTCGAA 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 3 cut(s) 167, 284, 846
BstDSI CCRYGG 2 cut(s) 259, 340
BstENI CCTNNNNNAGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 740
BstFNI CGCG 1 cut(s) 834
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstMAI GTCTC 2 cut(s) 260, 271
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 2 cut(s) 459, 573
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 457, 571
BstSFI CTRYAG 1 cut(s) 877
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 3 cut(s) 442, 568, 1007
BstXI CCANNNNNNTGG 2 cut(s) 94, 594
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 515, 895
BtgI CCRYGG 2 cut(s) 259, 340
BtsCI GGATG 1 cut(s) 740
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 428
CciI TCATGA 2 cut(s) 373, 1074
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 882
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 5 cut(s) 174, 219, 631, 637, 842
CviAII CATG 8 cut(s) 205, 239, 260, 341, 374, 634, 991, 1075
CviQI GTAC 5 cut(s) 174, 219, 631, 637, 842
DdeI CTNAG 3 cut(s) 167, 284, 846
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 513
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 4 cut(s) 259, 340, 725, 871
Eco147I AGGCCT 1 cut(s) 895
Eco47I GGWCC 1 cut(s) 882
Eco47III AGCGCT 1 cut(s) 291
Eco81I CCTNAGG 1 cut(s) 846
EcoNI CCTNNNNNAGG 1 cut(s) 870
EcoRII CCWGG 2 cut(s) 457, 571
EcoT14I CCWWGG 4 cut(s) 259, 340, 725, 871
ErhI CCWWGG 4 cut(s) 259, 340, 725, 871
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 8 cut(s) 208, 242, 263, 344, 377, 637, 994, 1078
FaqI GGGAC 2 cut(s) 403, 545
FatI CATG 8 cut(s) 204, 238, 259, 340, 373, 633, 990, 1074
FblI GTMKAC 1 cut(s) 1103
Fnu4HI GCNGC 3 cut(s) 431, 582, 996
FokI GGATG 1 cut(s) 747
Fsp4HI GCNGC 3 cut(s) 431, 582, 996
FspBI CTAG 5 cut(s) 135, 396, 761, 945, 1008
GlaI GCGC 1 cut(s) 291
GluI GCNGC 3 cut(s) 431, 582, 996
GsaI CCCAGC 1 cut(s) 602
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 515, 895
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 1 cut(s) 292
Hin1II CATG 8 cut(s) 208, 242, 263, 344, 377, 637, 994, 1078
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 5 cut(s) 131, 232, 360, 1025, 1066
HphI GGTGA 5 cut(s) 76, 140, 767, 860, 925
Hpy166II GTNNAC 7 cut(s) 48, 221, 244, 442, 631, 758, 1104
Hpy188I TCNGA 4 cut(s) 66, 181, 287, 886
Hpy188III TCNNGA 6 cut(s) 102, 374, 664, 704, 858, 1075
Hpy8I GTNNAC 7 cut(s) 48, 221, 244, 442, 631, 758, 1104
HpyAV CCTTC 4 cut(s) 154, 920, 960, 1024
HpyCH4V TGCA 5 cut(s) 71, 383, 415, 525, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 167, 284, 846
Hsp92II CATG 8 cut(s) 208, 242, 263, 344, 377, 637, 994, 1078
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 177
Lsp1109I GCAGC 3 cut(s) 442, 568, 1007
MaeI CTAG 5 cut(s) 135, 396, 761, 945, 1008
MboII GAAGA 7 cut(s) 431, 478, 690, 692, 693, 751, 928
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 7 cut(s) 7, 189, 200, 378, 481, 933, 954
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 1060
MmeI TCCRAC 1 cut(s) 903
Mox20I TGGCCA 1 cut(s) 515
MroXI GAANNNNTTC 2 cut(s) 369, 485
MscI TGGCCA 1 cut(s) 515
MseI TTAA 7 cut(s) 356, 650, 696, 827, 899, 957, 1108
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 515
MspR9I CCNGG 2 cut(s) 459, 573
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 459, 573
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 1 cut(s) 161
NcoI CCATGG 2 cut(s) 259, 340
NlaIII CATG 8 cut(s) 208, 242, 263, 344, 377, 637, 994, 1078
NlaIV GGNNCC 1 cut(s) 175
NspI RCATGY 1 cut(s) 637
NspV TTCGAA 1 cut(s) 363
OliI CACNNNNGTG 1 cut(s) 621
PagI TCATGA 2 cut(s) 373, 1074
PceI AGGCCT 1 cut(s) 895
PciI ACATGT 1 cut(s) 633
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 2 cut(s) 369, 485
PfeI GAWTC 4 cut(s) 131, 232, 360, 1025
PkrI GCNGC 3 cut(s) 432, 583, 997
PleI GAGTC 1 cut(s) 1060
PpsI GAGTC 1 cut(s) 1060
PscI ACATGT 1 cut(s) 633
PshBI ATTAAT 2 cut(s) 650, 957
PsiI TTATAA 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 457, 571
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 2 cut(s) 457, 571
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 882
RsaI GTAC 5 cut(s) 175, 220, 632, 638, 843
RsaNI GTAC 5 cut(s) 174, 219, 631, 637, 842
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 7 cut(s) 356, 650, 696, 827, 899, 957, 1108
SatI GCNGC 3 cut(s) 431, 582, 996
Sau96I GGNCC 1 cut(s) 882
SchI GAGTC 1 cut(s) 1060
ScrFI CCNGG 2 cut(s) 459, 573
SfcI CTRYAG 1 cut(s) 877
SfuI TTCGAA 1 cut(s) 363
SinI GGWCC 1 cut(s) 882
SmiMI CAYNNNNRTG 1 cut(s) 621
SpeI ACTAGT 1 cut(s) 1007
Sse9I AATT 7 cut(s) 7, 189, 200, 378, 481, 933, 954
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 3 cut(s) 209, 834, 911
SspI AATATT 1 cut(s) 466
SspMI CTAG 5 cut(s) 135, 396, 761, 945, 1008
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 2 cut(s) 457, 571
StyI CCWWGG 4 cut(s) 259, 340, 725, 871
TaqI TCGA 3 cut(s) 363, 663, 1017
TasI AATT 7 cut(s) 7, 189, 200, 378, 481, 933, 954
TatI WGTACW 3 cut(s) 218, 630, 636
TfiI GAWTC 4 cut(s) 131, 232, 360, 1025
Tru1I TTAA 7 cut(s) 356, 650, 696, 827, 899, 957, 1108
Tru9I TTAA 7 cut(s) 356, 650, 696, 827, 899, 957, 1108
TscAI CASTG 1 cut(s) 162
TseI GCWGC 3 cut(s) 430, 581, 995
TspDTI ATGAA 5 cut(s) 193, 224, 362, 390, 1091
TspGWI ACGGA 1 cut(s) 1037
TspRI CASTG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 882
VspI ATTAAT 2 cut(s) 650, 957
XagI CCTNNNNNAGG 1 cut(s) 870
XapI RAATTY 1 cut(s) 481
XceI RCATGY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 732
XmiI GTMKAC 1 cut(s) 1103
XmnI GAANNNNTTC 2 cut(s) 369, 485
XspI CTAG 5 cut(s) 135, 396, 761, 945, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.