RchiOBHm_Chr4g0401631
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19845980 .. 19846669
690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37353

Sequence Viewer

Length: 690 bp
ATGAACATTGCCTCTGATAAGAGAATTGAAGAACAATTCATGGCAGAAGTTAGTACCCTTGTCAGGATTCATCATTTCAACTTGGTTCGTCTTCATGGTTTCTTCTTTGAGAGACACCTCAGAGCACTTTTTTATGAGTATATGCCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCGGTTGGGACAGCTAGAGGGATTGTTTACTTGCACGAAGAATGCCAGCAGCGGATAGTTCACTACGATATACAACCTGAAAATATTCTTTTGGATGTGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTCCAACAGAGACAACACTCATATAACAATGACAGGGGGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCGGTTTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGTATGCTATTATTTGAGATCATAGGTAGAAGAAGGAACCTAGACCTGAATCTTCCGGAGAGTCAAGACTGGTTTCCGAGGTGGGTATGGAAGAAGTTTGAAGCCGGACAACTAGTAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAAGATAAAGAGATAGCAGAGAGAATGGTAAAAGTAGTTATCTGGTGTGTTCAGTACAGGCATGAGTAG

Protein Analysis

229

Amino Acids

26.98

Weight (kDa)

6.6

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 6 - 167 4.2e-34 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 7 - 169 3e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 3 cut(s) 218, 268, 436
AcoI YGGCCR 1 cut(s) 348
AfaI GTAC 3 cut(s) 55, 467, 677
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 29, 79, 575
AhlI ACTAGT 1 cut(s) 586
AjnI CCWGG 1 cut(s) 406
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 6 cut(s) 205, 230, 335, 355, 471, 595
AluI AGCT 6 cut(s) 205, 230, 335, 355, 471, 595
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 106, 360
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 3 cut(s) 265, 416, 433
Asp700I GAANNNNTTC 2 cut(s) 204, 300
AsuII TTCGAA 1 cut(s) 198
BalI TGGCCA 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 127
BbvI GCAGC 3 cut(s) 277, 403, 420
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 106, 360
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 4 cut(s) 231, 515, 587, 602
BisI GCNGC 3 cut(s) 266, 417, 434
BlsI GCNGC 3 cut(s) 267, 418, 435
Bme1390I CCNGG 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 388, 420
Bpu14I TTCGAA 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 175, 551
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 548
Bse3DI GCAATG 1 cut(s) 6
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 175, 551
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 548
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 3 cut(s) 277, 403, 420
BsgI GTGCAG 1 cut(s) 402
BshFI GGCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 530, 579
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 106, 360
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 350
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 3 cut(s) 218, 268, 436
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 132
BspEI TCCGGA 1 cut(s) 529
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 6
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 1 cut(s) 548
BssECI CCNNGG 2 cut(s) 175, 551
BssMI GATC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 408
BstAUI TGTACA 1 cut(s) 465
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 119
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 495
BstMAI GTCTC 2 cut(s) 106, 360
BstMBI GATC 1 cut(s) 492
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 277, 403, 420
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 208
Csp6I GTAC 3 cut(s) 54, 466, 676
CviAII CATG 5 cut(s) 40, 95, 176, 209, 683
CviJI RGCY 9 cut(s) 205, 230, 335, 350, 355, 433, 471, 578, 595
CviKI_1 RGCY 9 cut(s) 205, 230, 335, 350, 355, 433, 471, 578, 595
CviQI GTAC 3 cut(s) 54, 466, 676
DdeI CTNAG 1 cut(s) 119
DpnI GATC 1 cut(s) 494
DpnII GATC 1 cut(s) 492
EaeI YGGCCR 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 5 cut(s) 43, 98, 179, 212, 686
FaqI GGGAC 1 cut(s) 238
FatI CATG 5 cut(s) 39, 94, 175, 208, 682
Fnu4HI GCNGC 3 cut(s) 266, 417, 434
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 3 cut(s) 266, 417, 434
FspBI CTAG 4 cut(s) 231, 515, 587, 602
GluI GCNGC 3 cut(s) 266, 417, 434
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 530, 579
Hin1II CATG 5 cut(s) 43, 98, 179, 212, 686
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 4 cut(s) 67, 195, 523, 535
HpaII CCGG 2 cut(s) 530, 579
Hpy166II GTNNAC 4 cut(s) 244, 277, 316, 466
Hpy188I TCNGA 3 cut(s) 16, 122, 552
Hpy188III TCNNGA 4 cut(s) 64, 209, 530, 539
Hpy8I GTNNAC 4 cut(s) 244, 277, 316, 466
HpyAV CCTTC 1 cut(s) 501
HpyCH4V TGCA 2 cut(s) 250, 419
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 5 cut(s) 43, 98, 179, 212, 686
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 1 cut(s) 492
Lsp1109I GCAGC 3 cut(s) 277, 403, 420
MaeI CTAG 4 cut(s) 231, 515, 587, 602
MalI GATC 1 cut(s) 494
MboI GATC 1 cut(s) 492
MboII GAAGA 7 cut(s) 41, 83, 94, 266, 516, 518, 577
MhlI GDGCHC 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 3 cut(s) 24, 35, 213
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 544
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 6 cut(s) 22, 128, 227, 390, 546, 610
Mox20I TGGCCA 1 cut(s) 350
MroI TCCGGA 1 cut(s) 529
MroXI GAANNNNTTC 2 cut(s) 204, 300
MscI TGGCCA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 456
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 2 cut(s) 530, 579
MspR9I CCNGG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 408
NcoI CCATGG 1 cut(s) 175
NdeII GATC 1 cut(s) 492
NlaIII CATG 5 cut(s) 43, 98, 179, 212, 686
NlaIV GGNNCC 1 cut(s) 512
NspV TTCGAA 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 456
PagI TCATGA 1 cut(s) 208
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 2 cut(s) 204, 300
PfeI GAWTC 3 cut(s) 67, 195, 523
PkrI GCNGC 3 cut(s) 267, 418, 435
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 512
RsaI GTAC 3 cut(s) 55, 467, 677
RsaNI GTAC 3 cut(s) 54, 466, 676
RseI CAYNNNNRTG 1 cut(s) 456
SatI GCNGC 3 cut(s) 266, 417, 434
Sau3AI GATC 1 cut(s) 492
SchI GAGTC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 456
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 3 cut(s) 24, 35, 213
SsiI CCGC 3 cut(s) 218, 268, 436
SspI AATATT 1 cut(s) 301
SspMI CTAG 4 cut(s) 231, 515, 587, 602
StyD4I CCNGG 1 cut(s) 406
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 24, 35, 213
TatI WGTACW 2 cut(s) 465, 675
TfiI GAWTC 3 cut(s) 67, 195, 523
TseI GCWGC 3 cut(s) 265, 416, 433
TspDTI ATGAA 6 cut(s) 17, 28, 59, 83, 197, 225
XmnI GAANNNNTTC 2 cut(s) 204, 300
XspI CTAG 4 cut(s) 231, 515, 587, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.