Rmu_sc0004622.1_g000009
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004622.1
Physical Location & Seq
Reverse (-)
41741 .. 43184
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004622.1_g000009.1.cds

Sequence Viewer

Length: 1335 bp
atgtcgacaaattatactgtcgttatcgttgccgttgcggccgttaccgctatcattggccttgccgttaccgttgccgttgccgttgcgagtcttggagatcaacaacttaccgccattgttgtatttatgttagtgtctgtgatgactgctatcttaggtgcagcatggaggaaaagtaatcagaaaggtagcagctctgatgatccaatctacactcagacaaaaaacaaacaaaaaagctttccgacactcacaatggacaattttctaaatgatatggaaagagagaagcccatcaggtttacttctcaacaaattcggattgcaactgataacttcaccaacttgttgggttcaggagggtttggttcagtttataaaggtctatttagtagtggaacgcttgcgacagtgaaggttctaagaggtacctcggacaagagaattgatgagcaattcatggcggaagttagtacacttggcaggattcatcatgtcaacttggttcgtctccatggtttctgctttgagagagagcttagagcactggtttatgagtatatgtcaaatggttcgcttgataagtttcttttccacggaaacaggatggtaagatttgaaaagcttcatgacattgcggttggaacggctagagggattgcttacttgcacgaagaatgccagcaacgaatagtccactatgatataaaacctgaaaatattcttttggatgtgaatttcctccccaaagttgctgacttcggtttggccaagcttatcaacagggacaatactcatataacaatgacaggttggaggggaactcctggttatgctgcaccagaactttggctgcggtttcctataacccacaaatgtgatgtgtacagctttggaatgatgttatttgagatcataggtagaagaaggaaccatgaccttaatcttccagagagccaagactggtttccaaggtggggatggaagaagtttgaagctggtgaactaggagaactaatggcagtgtgtggtatagaggaaaaagatagagaggcagcagagagaatgttaaaggtagctatctggtgtgttcagtataggtccgagttgaggcccttaatgagtgttgtgttgaaaatgttggaaggagaatttgagattcctagaccttcaattaatccatttcagcacttgatgccagacaatcctatcatggcagcatatagcactagtgccttcgacacggattcctctcaaacaataactggatgtaacattgtttgtgagactcccatcatgaaaaaattcgagattgaaatagcgtctacttaa

Protein Analysis

444

Amino Acids

50.07

Weight (kDa)

6.84

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
Acc65I GGTACC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 431
AccI GTMKAC 2 cut(s) 5, 1328
AciI CCGC 6 cut(s) 38, 48, 114, 467, 641, 859
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 39, 771
AcsI RAATTY 4 cut(s) 318, 739, 1154, 1307
AfaI GTAC 3 cut(s) 433, 478, 890
AfiI CCNNNNNNNGG 2 cut(s) 980, 1113
AgsI TTSAA 5 cut(s) 623, 998, 1138, 1176, 1319
AhlI ACTAGT 1 cut(s) 1232
AjnI CCWGG 1 cut(s) 829
AjuI GAANNNNNNNTTGG 2 cut(s) 954, 986
AleI CACNNNNGTG 1 cut(s) 879
AluBI AGCT 8 cut(s) 198, 243, 541, 628, 778, 894, 1001, 1082
AluI AGCT 8 cut(s) 198, 243, 541, 628, 778, 894, 1001, 1082
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 2 cut(s) 518, 1283
AlwI GGATC 1 cut(s) 200
AoxI GGCC 4 cut(s) 39, 58, 771, 1115
ApeKI GCWGC 6 cut(s) 164, 195, 839, 856, 1058, 1220
ApoI RAATTY 4 cut(s) 318, 739, 1154, 1307
AseI ATTAAT 1 cut(s) 1179
Asp700I GAANNNNTTC 3 cut(s) 627, 723, 1307
Asp718I GGTACC 1 cut(s) 431
AspS9I GGNCC 2 cut(s) 1104, 1116
AsuHPI GGTGA 2 cut(s) 334, 1016
AvaII GGWCC 1 cut(s) 1104
BalI TGGCCA 1 cut(s) 773
BanI GGYRCC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 6 cut(s) 176, 207, 826, 843, 1070, 1232
BccI CCATC 4 cut(s) 305, 604, 978, 1304
BceAI ACGGC 6 cut(s) 17, 26, 50, 62, 68, 666
BciT130I CCWGG 1 cut(s) 831
BcoDI GTCTC 2 cut(s) 518, 1283
BcuI ACTAGT 1 cut(s) 1232
BfaI CTAG 4 cut(s) 654, 1010, 1167, 1233
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 7 cut(s) 39, 165, 196, 840, 857, 1059, 1221
BlsI GCNGC 7 cut(s) 40, 166, 197, 841, 858, 1060, 1222
Bme1390I CCNGG 1 cut(s) 831
Bme18I GGWCC 1 cut(s) 1104
BmgT120I GGNCC 2 cut(s) 1104, 1116
BmiI GGNNCC 2 cut(s) 433, 935
BmrFI CCNGG 1 cut(s) 831
BmsI GCATC 1 cut(s) 1188
BplI GAGNNNNNCTC 2 cut(s) 811, 843
BsaJI CCNNGG 4 cut(s) 435, 517, 598, 974
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 980, 1113
Bse1I ACTGG 3 cut(s) 555, 971, 1273
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 831
BseDI CCNNGG 4 cut(s) 435, 517, 598, 974
BseGI GGATG 4 cut(s) 615, 739, 989, 1277
BseLI CCNNNNNNNGG 2 cut(s) 980, 1113
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 3 cut(s) 555, 971, 1273
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 6 cut(s) 176, 207, 826, 843, 1070, 1232
BsgI GTGCAG 2 cut(s) 183, 825
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 4 cut(s) 41, 60, 773, 1117
BshNI GGYRCC 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 550
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 980, 1113
BsmAI GTCTC 2 cut(s) 518, 1283
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 686
BsnI GGCC 4 cut(s) 41, 60, 773, 1117
Bsp1286I GDGCHC 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 3 cut(s) 100, 205, 915
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 6 cut(s) 38, 48, 114, 467, 641, 859
BspANI GGCC 4 cut(s) 41, 60, 773, 1117
BspCNI CTCAG 1 cut(s) 232
BspHI TCATGA 2 cut(s) 631, 1299
BspLI GGNNCC 2 cut(s) 433, 935
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 888
BsrI ACTGG 3 cut(s) 555, 971, 1273
BssECI CCNNGG 4 cut(s) 435, 517, 598, 974
BssMI GATC 3 cut(s) 100, 205, 915
BssT1I CCWWGG 2 cut(s) 517, 974
Bst2UI CCWGG 1 cut(s) 831
Bst4CI ACNGT 3 cut(s) 19, 73, 415
BstAPI GCANNNNNTGC 1 cut(s) 1198
BstAUI TGTACA 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 408, 686
BstDEI CTNAG 4 cut(s) 157, 219, 425, 542
BstDSI CCRYGG 2 cut(s) 517, 598
BstF5I GGATG 4 cut(s) 615, 739, 989, 1277
BstKTI GATC 3 cut(s) 103, 208, 918
BstMAI GTCTC 2 cut(s) 518, 1283
BstMBI GATC 3 cut(s) 100, 205, 915
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 1198
BstNI CCWGG 1 cut(s) 831
BstSCI CCNGG 1 cut(s) 829
BstV1I GCAGC 6 cut(s) 176, 207, 826, 843, 1070, 1232
BstXI CCANNNNNNTGG 2 cut(s) 352, 852
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 4 cut(s) 41, 60, 773, 1117
BtgI CCRYGG 2 cut(s) 517, 598
BtsCI GGATG 4 cut(s) 615, 739, 989, 1277
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 3 cut(s) 420, 548, 1032
Cac8I GCNNGC 2 cut(s) 408, 686
CciI TCATGA 2 cut(s) 631, 1299
Cfr13I GGNCC 2 cut(s) 1104, 1116
CseI GACGC 1 cut(s) 1314
Csp6I GTAC 3 cut(s) 432, 477, 889
CviAII CATG 8 cut(s) 168, 463, 497, 518, 632, 938, 1216, 1300
CviQI GTAC 3 cut(s) 432, 477, 889
DdeI CTNAG 4 cut(s) 157, 219, 425, 542
DpnI GATC 3 cut(s) 102, 207, 917
DpnII GATC 3 cut(s) 100, 205, 915
EaeI YGGCCR 2 cut(s) 39, 771
EagI CGGCCG 1 cut(s) 39
EciI GGCGGA 1 cut(s) 482
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 517, 974
Eco47I GGWCC 1 cut(s) 1104
Eco52I CGGCCG 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 1116
EcoRII CCWGG 1 cut(s) 829
EcoT14I CCWWGG 2 cut(s) 517, 974
ErhI CCWWGG 2 cut(s) 517, 974
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 8 cut(s) 171, 466, 500, 521, 635, 941, 1219, 1303
FaqI GGGAC 1 cut(s) 803
FatI CATG 8 cut(s) 167, 462, 496, 517, 631, 937, 1215, 1299
FblI GTMKAC 2 cut(s) 5, 1328
Fnu4HI GCNGC 7 cut(s) 39, 165, 196, 840, 857, 1059, 1221
FokI GGATG 4 cut(s) 622, 746, 996, 1284
Fsp4HI GCNGC 7 cut(s) 39, 165, 196, 840, 857, 1059, 1221
FspBI CTAG 4 cut(s) 654, 1010, 1167, 1233
GluI GCNGC 7 cut(s) 39, 165, 196, 840, 857, 1059, 1221
HaeIII GGCC 4 cut(s) 41, 60, 773, 1117
HgaI GACGC 1 cut(s) 1314
Hin1II CATG 8 cut(s) 171, 466, 500, 521, 635, 941, 1219, 1303
HincII GTYRAC 2 cut(s) 6, 502
HindII GTYRAC 2 cut(s) 6, 502
HindIII AAGCTT 3 cut(s) 241, 626, 776
HinfI GANTC 5 cut(s) 91, 490, 1162, 1250, 1291
HphI GGTGA 2 cut(s) 334, 1016
Hpy166II GTNNAC 8 cut(s) 6, 306, 479, 502, 700, 889, 1007, 1329
Hpy188I TCNGA 7 cut(s) 186, 202, 222, 249, 324, 439, 1108
Hpy188III TCNNGA 5 cut(s) 360, 632, 953, 1300, 1312
Hpy8I GTNNAC 8 cut(s) 6, 306, 479, 502, 700, 889, 1007, 1329
HpyAV CCTTC 5 cut(s) 412, 924, 1142, 1182, 1249
HpyCH4III ACNGT 3 cut(s) 19, 73, 415
HpyCH4V TGCA 4 cut(s) 164, 329, 673, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 1198
HpyF3I CTNAG 4 cut(s) 157, 219, 425, 542
Hsp92II CATG 8 cut(s) 171, 466, 500, 521, 635, 941, 1219, 1303
KpnI GGTACC 1 cut(s) 435
Kzo9I GATC 3 cut(s) 100, 205, 915
Lsp1109I GCAGC 6 cut(s) 176, 207, 826, 843, 1070, 1232
LweI GCATC 1 cut(s) 1188
MaeI CTAG 4 cut(s) 654, 1010, 1167, 1233
MaeIII GTNAC 3 cut(s) 43, 67, 1274
MalI GATC 3 cut(s) 102, 207, 917
MboI GATC 3 cut(s) 100, 205, 915
MboII GAAGA 4 cut(s) 689, 939, 941, 1000
MhlI GDGCHC 1 cut(s) 550
MlsI TGGCCA 1 cut(s) 773
MluCI AATT 9 cut(s) 10, 265, 318, 447, 458, 739, 1154, 1176, 1307
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 2 cut(s) 100, 1285
MmeI TCCRAC 4 cut(s) 272, 625, 797, 1125
Mox20I TGGCCA 1 cut(s) 773
MroXI GAANNNNTTC 3 cut(s) 627, 723, 1307
MscI TGGCCA 1 cut(s) 773
MseI TTAA 5 cut(s) 945, 1073, 1121, 1179, 1333
MslI CAYNNNNRTG 1 cut(s) 879
Msp20I TGGCCA 1 cut(s) 773
MspR9I CCNGG 1 cut(s) 831
Mva1269I GAATGC 1 cut(s) 686
MvaI CCWGG 1 cut(s) 831
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 1198
NcoI CCATGG 1 cut(s) 517
NdeII GATC 3 cut(s) 100, 205, 915
NlaIII CATG 8 cut(s) 171, 466, 500, 521, 635, 941, 1219, 1303
NlaIV GGNNCC 2 cut(s) 433, 935
OliI CACNNNNGTG 1 cut(s) 879
PagI TCATGA 2 cut(s) 631, 1299
PctI GAATGC 1 cut(s) 686
PdmI GAANNNNTTC 3 cut(s) 627, 723, 1307
PfeI GAWTC 3 cut(s) 490, 1162, 1250
PkrI GCNGC 7 cut(s) 40, 166, 197, 841, 858, 1060, 1222
PleI GAGTC 2 cut(s) 99, 1285
PpsI GAGTC 2 cut(s) 99, 1285
PshBI ATTAAT 1 cut(s) 1179
PsiI TTATAA 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 829
PspGI CCWGG 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 433, 935
PspPI GGNCC 2 cut(s) 1104, 1116
RsaI GTAC 3 cut(s) 433, 478, 890
RsaNI GTAC 3 cut(s) 432, 477, 889
RseI CAYNNNNRTG 1 cut(s) 879
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 5 cut(s) 945, 1073, 1121, 1179, 1333
SatI GCNGC 7 cut(s) 39, 165, 196, 840, 857, 1059, 1221
Sau3AI GATC 3 cut(s) 100, 205, 915
Sau96I GGNCC 2 cut(s) 1104, 1116
SchI GAGTC 2 cut(s) 100, 1285
ScrFI CCNGG 1 cut(s) 831
SduI GDGCHC 1 cut(s) 550
SfaNI GCATC 1 cut(s) 1188
SinI GGWCC 1 cut(s) 1104
SmiMI CAYNNNNRTG 1 cut(s) 879
SpeI ACTAGT 1 cut(s) 1232
Sse9I AATT 9 cut(s) 10, 265, 318, 447, 458, 739, 1154, 1176, 1307
SsiI CCGC 6 cut(s) 38, 48, 114, 467, 641, 859
SspI AATATT 1 cut(s) 724
SspMI CTAG 4 cut(s) 654, 1010, 1167, 1233
StyD4I CCNGG 1 cut(s) 829
StyI CCWWGG 2 cut(s) 517, 974
TaaI ACNGT 3 cut(s) 19, 73, 415
TaqI TCGA 3 cut(s) 5, 1242, 1311
TasI AATT 9 cut(s) 10, 265, 318, 447, 458, 739, 1154, 1176, 1307
TatI WGTACW 2 cut(s) 476, 888
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 490, 1162, 1250
Tru1I TTAA 5 cut(s) 945, 1073, 1121, 1179, 1333
Tru9I TTAA 5 cut(s) 945, 1073, 1121, 1179, 1333
TscAI CASTG 3 cut(s) 420, 555, 1032
TseI GCWGC 6 cut(s) 164, 195, 839, 856, 1058, 1220
TspDTI ATGAA 4 cut(s) 451, 482, 620, 1316
TspGWI ACGGA 2 cut(s) 615, 1262
TspRI CASTG 3 cut(s) 420, 555, 1032
VpaK11BI GGWCC 1 cut(s) 1104
VspI ATTAAT 1 cut(s) 1179
XapI RAATTY 4 cut(s) 318, 739, 1154, 1307
XcmI CCANNNNNNNNNTGG 1 cut(s) 981
XmiI GTMKAC 2 cut(s) 5, 1328
XmnI GAANNNNTTC 3 cut(s) 627, 723, 1307
XspI CTAG 4 cut(s) 654, 1010, 1167, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.