Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

19325597 .. 19326115

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAGGTTTAATTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACGTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGAGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACTTAACAGAGATAAGACTCATATATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

172

Amino Acids

19.54

Weight (kDa)

7.06

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 162	1.7e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 164	3.6e-33	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	155, 487
AjiI	CACGTC	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	4 cut(s)	331, 356, 461, 481
AluI	AGCT	4 cut(s)	331, 356, 461, 481
Alw26I	GTCTC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	92
Asp700I	GAANNNNTTC	2 cut(s)	330, 426
Asp718I	GGTACC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	403
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	106, 136
Bpu14I	TTCGAA	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	138, 184, 301
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
BseDI	CCNNGG	3 cut(s)	138, 184, 301
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	403
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	106, 136
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	138, 184, 301
BssT1I	CCWWGG	2 cut(s)	184, 301
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	442
BstMAI	GTCTC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	3 cut(s)	166, 302, 335
CviJI	RGCY	5 cut(s)	331, 356, 461, 476, 481
CviKI_1	RGCY	5 cut(s)	331, 356, 461, 476, 481
CviQI	GTAC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	184, 301
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	8
EcoO109I	RGGNCCY	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	184, 301
ErhI	CCWWGG	2 cut(s)	184, 301
FaeI	CATG	3 cut(s)	169, 305, 338
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	165, 301, 334
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	449
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	1 cut(s)	392
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	169, 305, 338
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	3 cut(s)	193, 321, 504
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	27, 142, 248
Hpy188III	TCNNGA	2 cut(s)	63, 335
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	32, 344, 376
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	3 cut(s)	169, 305, 338
KpnI	GGTACC	1 cut(s)	138
LpnPI	CCDG	5 cut(s)	41, 48, 175, 401, 432
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	243
MboII	GAAGA	2 cut(s)	167, 392
MfeI	CAATTG	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	6 cut(s)	10, 92, 150, 161, 252, 339
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	498
MnlI	CCTC	3 cut(s)	59, 148, 353
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	2 cut(s)	330, 426
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	2 cut(s)	9, 491
Msp20I	TGGCCA	1 cut(s)	476
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	301
NlaIII	CATG	3 cut(s)	169, 305, 338
NlaIV	GGNNCC	2 cut(s)	106, 136
NspV	TTCGAA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	334
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	330, 426
PfeI	GAWTC	2 cut(s)	193, 321
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PpuMI	RGGWCCY	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	106, 136
PspPI	GGNCC	1 cut(s)	124
PspPPI	RGGWCCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	9, 491
SatI	GCNGC	1 cut(s)	392
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	498
SetI	ASST	9 cut(s)	8, 126, 140, 246, 333, 358, 421, 463, 483
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	6 cut(s)	10, 92, 150, 161, 252, 339
SsiI	CCGC	1 cut(s)	170
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	357
StyI	CCWWGG	2 cut(s)	184, 301
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	324
TasI	AATT	6 cut(s)	10, 92, 150, 161, 252, 339
TfiI	GAWTC	2 cut(s)	193, 321
Tru1I	TTAA	2 cut(s)	9, 491
Tru9I	TTAA	2 cut(s)	9, 491
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	4 cut(s)	154, 185, 323, 351
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	330, 426
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.