Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006444.1

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

41897 .. 42406

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006444.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgacaggggggaggggaacttctggttatgctacaccagaagtttggctgcagtggcctataacccacaagtgtgatgtgtacagctttggaatgctattatttgagatcataggcagaagaaggaacctagacgacaatcttccggagagtcaagactggtttccaaggtggggatggaagaagtttgaagctggagaactaggagagctaatgttagtttttggcatagaggagaaagacaaagaggcaacagagagaatgttaaaggtagctatctgctgtgttcagtataggcccgagttgaggcctttaatgagtgctgtggtgaaaatgttggaaggagaaattgagattcctagaccttcaattaaccgaattcagtactcgttgccaggcacacctgtcatggtatcgtatagcactagtgtcttcaacacggatacctctcaaacaacaactcgtggcacggattcctctcaaacaacaactagtgttgaaggacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

169

Amino Acids

19.21

Weight (kDa)

5.31

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	2 cut(s)	83, 386
AfiI	CCNNNNNNNGG	2 cut(s)	173, 306
AgsI	TTSAA	4 cut(s)	191, 369, 436, 500
AhlI	ACTAGT	2 cut(s)	425, 491
AjnI	CCWGG	1 cut(s)	394
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	87, 194, 211, 275
AluI	AGCT	4 cut(s)	87, 194, 211, 275
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	3 cut(s)	56, 296, 308
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	299
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	436
BcuI	ACTAGT	2 cut(s)	425, 491
BfaI	CTAG	5 cut(s)	131, 203, 360, 426, 492
BfmI	CTRYAG	1 cut(s)	50
BfuI	GTATCC	1 cut(s)	436
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 306
Bse1I	ACTGG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	173, 306
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	36
BshFI	GGCC	3 cut(s)	58, 298, 310
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	173, 306
BsmI	GAATGC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	58, 298, 310
BsoBI	CYCGRG	1 cut(s)	299
Bsp13I	TCCGGA	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	108
BspANI	GGCC	3 cut(s)	58, 298, 310
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	128
BspMAI	CTGCAG	1 cut(s)	54
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	424
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	3 cut(s)	58, 298, 310
BtsCI	GGATG	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	82, 385
CviAII	CATG	1 cut(s)	409
CviJI	RGCY	8 cut(s)	49, 58, 87, 194, 211, 275, 298, 310
CviKI_1	RGCY	8 cut(s)	49, 58, 87, 194, 211, 275, 298, 310
CviQI	GTAC	2 cut(s)	82, 385
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	167
Eco147I	AGGCCT	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	412
FaiI	YATR	7 cut(s)	30, 62, 113, 230, 294, 410, 420
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	5 cut(s)	131, 203, 360, 426, 492
GluI	GCNGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	58, 298, 310
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	412
HinfI	GANTC	3 cut(s)	151, 355, 473
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	146, 155
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	4 cut(s)	117, 335, 375, 494
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	1 cut(s)	412
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	8 cut(s)	9, 51, 145, 159, 180, 381, 408, 417
Lsp1109I	GCAGC	1 cut(s)	36
MaeI	CTAG	5 cut(s)	131, 203, 360, 426, 492
MaeII	ACGT	1 cut(s)	505
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	4 cut(s)	132, 134, 193, 424
MluCI	AATT	3 cut(s)	348, 369, 378
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	6, 226, 241, 300, 457, 487
MroI	TCCGGA	1 cut(s)	145
MseI	TTAA	3 cut(s)	266, 314, 372
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	355, 473
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	54
RsaI	GTAC	2 cut(s)	83, 386
RsaNI	GTAC	2 cut(s)	82, 385
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	266, 314, 372
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	297
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	396
SfcI	CTRYAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	72
SpeI	ACTAGT	2 cut(s)	425, 491
Sse9I	AATT	3 cut(s)	348, 369, 378
SseBI	AGGCCT	1 cut(s)	310
SspMI	CTAG	5 cut(s)	131, 203, 360, 426, 492
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	167
TaiI	ACGT	1 cut(s)	508
TasI	AATT	3 cut(s)	348, 369, 378
TatI	WGTACW	2 cut(s)	81, 384
TfiI	GAWTC	2 cut(s)	355, 473
Tru1I	TTAA	3 cut(s)	266, 314, 372
Tru9I	TTAA	3 cut(s)	266, 314, 372
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	49
TspGWI	ACGGA	2 cut(s)	455, 485
TspRI	CASTG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XspI	CTAG	5 cut(s)	131, 203, 360, 426, 492
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.