Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Reverse (-)

47549068 .. 47550037

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCGAGTGGAGTTGTGACTGTTGTAGCATTAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGAAAGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACCTCAGAGCAATTGTTTATGAGTATATGTCAAATGTTGGGACAGCTAAAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCTACTACGATATAAAACTTGAAAAGATTCTTTTGGATGAGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCAGTGTCCTATAACCCATAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACCTAGACGACAATCTTCCGAAGAGTCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

186

Amino Acids

21.0

Weight (kDa)

8.29

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	10 - 77	2.5e-06	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 77	4.9e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	80 - 174	2.4e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 170	7.2e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	1 cut(s)	47
AfaI	GTAC	2 cut(s)	91, 479
AgsI	TTSAA	3 cut(s)	110, 308, 373
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	4 cut(s)	242, 347, 367, 483
AluI	AGCT	4 cut(s)	242, 347, 367, 483
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	277, 428, 445
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	289, 415, 432
BciT130I	CCWGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	527, 556
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	3 cut(s)	278, 429, 446
BlsI	GCNGC	3 cut(s)	279, 430, 447
Bme1390I	CCNGG	1 cut(s)	420
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	3 cut(s)	61, 91, 524
BmrFI	CCNGG	1 cut(s)	420
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BsaJI	CCNNGG	2 cut(s)	93, 139
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	93, 139
BseGI	GGATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	214
BseXI	GCAGC	3 cut(s)	289, 415, 432
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	2 cut(s)	275, 495
BsnI	GGCC	1 cut(s)	362
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	504
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	213
BspLI	GGNNCC	3 cut(s)	61, 91, 524
BspMAI	CTGCAG	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	89
BsrGI	TGTACA	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	93, 139
BssMI	GATC	1 cut(s)	504
BssT1I	CCWWGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	1 cut(s)	507
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	420
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	289, 415, 432
BstXI	CCANNNNNNTGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	2 cut(s)	78, 455
BtsIMutI	CAGTG	2 cut(s)	78, 455
Cac8I	GCNNGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	90, 478
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	6 cut(s)	242, 347, 362, 367, 445, 483
CviKI_1	RGCY	6 cut(s)	242, 347, 362, 367, 445, 483
CviQI	GTAC	2 cut(s)	90, 478
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	124
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	278, 429, 446
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	278, 429, 446
FspBI	CTAG	2 cut(s)	527, 556
GluI	GCNGC	3 cut(s)	278, 429, 446
HaeIII	GGCC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	4 cut(s)	148, 313, 385, 547
Hpy166II	GTNNAC	2 cut(s)	289, 478
Hpy188I	TCNGA	3 cut(s)	97, 203, 543
Hpy188III	TCNNGA	1 cut(s)	551
Hpy8I	GTNNAC	2 cut(s)	289, 478
HpyAV	CCTTC	2 cut(s)	70, 513
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	262, 431, 448
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	124
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	504
LpnPI	CCDG	5 cut(s)	287, 387, 405, 432, 447
Lsp1109I	GCAGC	3 cut(s)	289, 415, 432
MaeI	CTAG	2 cut(s)	527, 556
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	5 cut(s)	122, 278, 528, 530, 556
MfeI	CAATTG	1 cut(s)	207
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	4 cut(s)	47, 105, 116, 207
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	2 cut(s)	379, 556
MnlI	CCTC	3 cut(s)	103, 209, 402
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	468
Msp20I	TGGCCA	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	2 cut(s)	275, 495
MvaI	CCWGG	1 cut(s)	420
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	3 cut(s)	61, 91, 524
NmuCI	GTSAC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	275, 495
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	148, 313
PkrI	GCNGC	3 cut(s)	279, 430, 447
PleI	GAGTC	2 cut(s)	379, 555
PpsI	GAGTC	2 cut(s)	379, 555
PpuMI	RGGWCCY	1 cut(s)	79
PsiI	TTATAA	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	61, 91, 524
PspPI	GGNCC	1 cut(s)	79
PspPPI	RGGWCCY	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	450
RsaI	GTAC	2 cut(s)	91, 479
RsaNI	GTAC	2 cut(s)	90, 478
RseI	CAYNNNNRTG	1 cut(s)	468
SatI	GCNGC	3 cut(s)	278, 429, 446
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	2 cut(s)	379, 556
ScrFI	CCNGG	1 cut(s)	420
SetI	ASST	8 cut(s)	81, 95, 201, 244, 349, 369, 485, 528
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	47, 105, 116, 207
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	2 cut(s)	527, 556
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	47, 105, 116, 207
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	148, 313
TscAI	CASTG	2 cut(s)	78, 455
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	277, 428, 445
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	109, 140
TspRI	CASTG	2 cut(s)	78, 455
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	527, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.