Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004622.1

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Reverse (-)

56367 .. 57536

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004622.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

atgctaatattggttgcagaatgcaaaagaaggaatcagagtaggatctctgataacccaagttttctgactctcacaatgaacaaatttctgaatgatatggaaacagagaagcccatcagatttacttctcaacaacttcagattgcaactgataacttcaccaacttgctgggttcaggagggtttggtgcagtttataaaggaatatttagtaatggaacctctgtggcagtgaaggttctaaatggtacctcggagggaattgaagaacaattcatggcggaagttagtacccttggcaggattcatcatatcaacctggttcgtcttcatggtttctgctttgagagacacctcagagcacttgtttatgagtatatgccaaatggttcgcttgacaagtttcttttccatggaaacaacattttaggattcgaaaagcttcatgaaattgcagttgggacagctagaggaattgcttacttgcacgaagaatgccagcagcggatagtccactacgatataaaacctgaaaatattcttttggatgttaacttctttcctaaagtagctgattttggtttggcgaagctgtccaacagagacaagactcatataacaatgacagggtggaggggaactcgtggttatgctgcaccagaagtttgcctacggtgtcctataacccacaagtgtgatgtgtacagctttggaatgctattatttgagatcataggtagaaggaggaacctagacctgaatctgcaggagagtcaagactggtttccgatgtggggatggaagaagtttgaagctggtgaactagaagaactaatggtagtatgtggtatagatgaaaaagataaagaggcagcagtgagaatggtaaaagtagctatatggtgtgttcagtatagctctgagttgaggcctttgatgagtgtagtggtgaaaatgctggaaggagcacttgaaattcctaagccttcaattaacccatttcagtacttgatgccaggtactccaatagtggctgcatttcccgcatatagcactagtgcattcgacactgattcctctcaaaagataaccggacatagcttcttgcgtggtactcctatcatgaggagatacgaaattgaaatagcatctagtatgctgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

389

Amino Acids

44.12

Weight (kDa)

7.16

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	3 cut(s)	284, 508, 1047
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	86, 978
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	6 cut(s)	253, 295, 707, 1010, 1024, 1117
AfiI	CCNNNNNNNGG	2 cut(s)	303, 797
AgsI	TTSAA	5 cut(s)	269, 815, 977, 993, 1145
AhlI	ACTAGT	1 cut(s)	1058
AjnI	CCWGG	2 cut(s)	321, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
AleI	CACNNNNGTG	1 cut(s)	696
AluBI	AGCT	9 cut(s)	445, 470, 575, 595, 711, 818, 899, 921, 1104
AluI	AGCT	9 cut(s)	445, 470, 575, 595, 711, 818, 899, 921, 1104
Alw21I	GWGCWC	2 cut(s)	367, 973
Alw26I	GTCTC	2 cut(s)	346, 600
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	932
ApeKI	GCWGC	4 cut(s)	505, 656, 875, 1037
ApoI	RAATTY	2 cut(s)	86, 978
Asp700I	GAANNNNTTC	2 cut(s)	444, 540
Asp718I	GGTACC	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	154, 833, 964
AsuII	TTCGAA	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
BauI	CACGAG	1 cut(s)	645
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	367, 973
BbvI	GCAGC	4 cut(s)	517, 643, 887, 1024
BccI	CCATC	2 cut(s)	125, 795
BciT130I	CCWGG	2 cut(s)	323, 1020
BcoDI	GTCTC	2 cut(s)	346, 600
BcuI	ACTAGT	1 cut(s)	1058
BfaI	CTAG	5 cut(s)	471, 755, 827, 1059, 1155
BfmI	CTRYAG	1 cut(s)	767
BisI	GCNGC	4 cut(s)	506, 657, 876, 1038
BlsI	GCNGC	4 cut(s)	507, 658, 877, 1039
BmcAI	AGTACT	1 cut(s)	1010
Bme1390I	CCNGG	2 cut(s)	323, 1020
BmiI	GGNNCC	3 cut(s)	223, 253, 752
BmrFI	CCNGG	2 cut(s)	323, 1020
BmsI	GCATC	2 cut(s)	1005, 1160
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	628, 660
Bpu10I	CCTNAGC	1 cut(s)	984
Bpu14I	TTCGAA	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	255, 298, 415
BsaWI	WCCGGW	1 cut(s)	1094
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 797
Bse1I	ACTGG	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	323, 1020
BseDI	CCNNGG	3 cut(s)	255, 298, 415
BseGI	GGATG	2 cut(s)	556, 806
BseLI	CCNNNNNNNGG	2 cut(s)	303, 797
BseMII	CTCAG	2 cut(s)	373, 915
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	1144
BseXI	GCAGC	4 cut(s)	517, 643, 887, 1024
BseYI	CCCAGC	1 cut(s)	172
BsgI	GTGCAG	2 cut(s)	213, 642
BshFI	GGCC	1 cut(s)	934
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	367, 973
BsiSI	CCGG	1 cut(s)	1095
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	303, 797
BsmAI	GTCTC	2 cut(s)	346, 600
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	4 cut(s)	26, 503, 723, 1064
BsnI	GGCC	1 cut(s)	934
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	2 cut(s)	367, 973
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	45, 732
Bsp19I	CCATGG	1 cut(s)	415
BspACI	CCGC	3 cut(s)	284, 508, 1047
BspANI	GGCC	1 cut(s)	934
BspCNI	CTCAG	2 cut(s)	372, 916
BspHI	TCATGA	2 cut(s)	448, 1125
BspLI	GGNNCC	3 cut(s)	223, 253, 752
BspMAI	CTGCAG	1 cut(s)	771
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	3 cut(s)	255, 298, 415
BssMI	GATC	2 cut(s)	45, 732
BssSI	CACGAG	1 cut(s)	645
BssT1I	CCWWGG	2 cut(s)	298, 415
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	2 cut(s)	323, 1020
Bst4CI	ACNGT	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	359, 924, 984
BstDSI	CCRYGG	1 cut(s)	415
BstF5I	GGATG	2 cut(s)	556, 806
BstKTI	GATC	2 cut(s)	48, 735
BstMAI	GTCTC	2 cut(s)	346, 600
BstMBI	GATC	2 cut(s)	45, 732
BstMWI	GCNNNNNNNGC	1 cut(s)	1046
BstNI	CCWGG	2 cut(s)	323, 1020
BstSCI	CCNGG	2 cut(s)	321, 1018
BstSFI	CTRYAG	1 cut(s)	767
BstV1I	GCAGC	4 cut(s)	517, 643, 887, 1024
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	45
BstXI	CCANNNNNNTGG	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	934
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	556, 806
BtsI	GCAGTG	2 cut(s)	240, 885
BtsIMutI	CAGTG	3 cut(s)	240, 885, 1071
Cac8I	GCNNGC	1 cut(s)	503
CciI	TCATGA	2 cut(s)	448, 1125
CsiI	ACCWGGT	1 cut(s)	321
Csp6I	GTAC	6 cut(s)	252, 294, 706, 1009, 1023, 1116
CviAII	CATG	5 cut(s)	280, 335, 416, 449, 1126
CviQI	GTAC	6 cut(s)	252, 294, 706, 1009, 1023, 1116
DdeI	CTNAG	3 cut(s)	359, 924, 984
DpnI	GATC	2 cut(s)	47, 734
DpnII	GATC	2 cut(s)	45, 732
EciI	GGCGGA	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	298, 415
Eco147I	AGGCCT	1 cut(s)	934
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	321, 1018
EcoT14I	CCWWGG	2 cut(s)	298, 415
ErhI	CCWWGG	2 cut(s)	298, 415
FaeI	CATG	5 cut(s)	283, 338, 419, 452, 1129
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	5 cut(s)	279, 334, 415, 448, 1125
FauI	CCCGC	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	506, 657, 876, 1038
FokI	GGATG	2 cut(s)	563, 813
Fsp4HI	GCNGC	4 cut(s)	506, 657, 876, 1038
FspBI	CTAG	5 cut(s)	471, 755, 827, 1059, 1155
GluI	GCNGC	4 cut(s)	506, 657, 876, 1038
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	934
HapII	CCGG	1 cut(s)	1095
Hin1II	CATG	5 cut(s)	283, 338, 419, 452, 1129
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	8 cut(s)	34, 70, 307, 435, 613, 763, 775, 1076
HpaI	GTTAAC	1 cut(s)	556
HpaII	CCGG	1 cut(s)	1095
HphI	GGTGA	3 cut(s)	154, 833, 964
Hpy166II	GTNNAC	4 cut(s)	517, 556, 706, 824
Hpy188III	TCNNGA	4 cut(s)	180, 449, 779, 1126
Hpy8I	GTNNAC	4 cut(s)	517, 556, 706, 824
HpyAV	CCTTC	5 cut(s)	24, 232, 738, 959, 999
HpyCH4III	ACNGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1046
HpyF3I	CTNAG	3 cut(s)	359, 924, 984
Hsp92II	CATG	5 cut(s)	283, 338, 419, 452, 1129
KpnI	GGTACC	1 cut(s)	255
KspAI	GTTAAC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	45, 732
LmnI	GCTCC	1 cut(s)	968
Lsp1109I	GCAGC	4 cut(s)	517, 643, 887, 1024
LweI	GCATC	2 cut(s)	1005, 1160
MabI	ACCWGGT	1 cut(s)	321
MaeI	CTAG	5 cut(s)	471, 755, 827, 1059, 1155
MalI	GATC	2 cut(s)	47, 734
MboI	GATC	2 cut(s)	45, 732
MboII	GAAGA	5 cut(s)	281, 323, 506, 817, 842
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	367, 973
MluCI	AATT	8 cut(s)	86, 264, 275, 453, 477, 978, 993, 1140
MlyI	GAGTC	3 cut(s)	64, 607, 784
MmeI	TCCRAC	1 cut(s)	624
MroXI	GAANNNNTTC	2 cut(s)	444, 540
MseI	TTAA	2 cut(s)	555, 996
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	1095
MspR9I	CCNGG	2 cut(s)	323, 1020
Mva1269I	GAATGC	4 cut(s)	26, 503, 723, 1064
MvaI	CCWGG	2 cut(s)	323, 1020
MwoI	GCNNNNNNNGC	1 cut(s)	1046
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	2 cut(s)	45, 732
NlaIII	CATG	5 cut(s)	283, 338, 419, 452, 1129
NlaIV	GGNNCC	3 cut(s)	223, 253, 752
NspV	TTCGAA	1 cut(s)	438
OliI	CACNNNNGTG	1 cut(s)	696
PagI	TCATGA	2 cut(s)	448, 1125
PceI	AGGCCT	1 cut(s)	934
PctI	GAATGC	4 cut(s)	26, 503, 723, 1064
PdmI	GAANNNNTTC	2 cut(s)	444, 540
PfeI	GAWTC	5 cut(s)	34, 307, 435, 763, 1076
PkrI	GCNGC	4 cut(s)	507, 658, 877, 1039
PleI	GAGTC	3 cut(s)	64, 607, 783
PpsI	GAGTC	3 cut(s)	64, 607, 783
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	321, 1018
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	321, 1018
PspN4I	GGNNCC	3 cut(s)	223, 253, 752
PstI	CTGCAG	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	6 cut(s)	253, 295, 707, 1010, 1024, 1117
RsaNI	GTAC	6 cut(s)	252, 294, 706, 1009, 1023, 1116
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	2 cut(s)	555, 996
SatI	GCNGC	4 cut(s)	506, 657, 876, 1038
Sau3AI	GATC	2 cut(s)	45, 732
ScaI	AGTACT	1 cut(s)	1010
SchI	GAGTC	3 cut(s)	64, 607, 784
ScrFI	CCNGG	2 cut(s)	323, 1020
SduI	GDGCHC	2 cut(s)	367, 973
SexAI	ACCWGGT	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	1005, 1160
SfcI	CTRYAG	1 cut(s)	767
SfuI	TTCGAA	1 cut(s)	438
SmiMI	CAYNNNNRTG	1 cut(s)	696
SpeI	ACTAGT	1 cut(s)	1058
Sse9I	AATT	8 cut(s)	86, 264, 275, 453, 477, 978, 993, 1140
SseBI	AGGCCT	1 cut(s)	934
SsiI	CCGC	3 cut(s)	284, 508, 1047
SspI	AATATT	3 cut(s)	9, 210, 541
SspMI	CTAG	5 cut(s)	471, 755, 827, 1059, 1155
StuI	AGGCCT	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	321, 1018
StyI	CCWWGG	2 cut(s)	298, 415
TaaI	ACNGT	1 cut(s)	678
TaqI	TCGA	2 cut(s)	438, 1068
TasI	AATT	8 cut(s)	86, 264, 275, 453, 477, 978, 993, 1140
TatI	WGTACW	2 cut(s)	705, 1008
TfiI	GAWTC	5 cut(s)	34, 307, 435, 763, 1076
Tru1I	TTAA	2 cut(s)	555, 996
Tru9I	TTAA	2 cut(s)	555, 996
TscAI	CASTG	3 cut(s)	240, 885, 1078
TseI	GCWGC	4 cut(s)	505, 656, 875, 1037
TspDTI	ATGAA	7 cut(s)	95, 268, 299, 323, 437, 465, 873
TspRI	CASTG	3 cut(s)	240, 885, 1078
XapI	RAATTY	2 cut(s)	86, 978
XmnI	GAANNNNTTC	2 cut(s)	444, 540
XspI	CTAG	5 cut(s)	471, 755, 827, 1059, 1155
ZrmI	AGTACT	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.