RchiOBHm_Chr4g0401231
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19262460 .. 19263825
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37317

Sequence Viewer

Length: 1248 bp
ATGTTGAGTTACCCGAGTGCACGGTCAAACATCGGACTAATAGCCATTCTTGTAGGAGTTGTACTCCTTTTTGTGAAGATCCTAATATTGGTTGCAGAATGCAAAAGAAGGAATCAGAGTAGGATCTCTGATAACCCAAGTTTTCTGACTCTCACAATGAACAAATTTCTTAATGATATGGAAACAGAGAAGCCCATCAGATTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTGCAGTTTATAAAGGAATATTTAGTAATGGAACCTCTGTGGCAGTGAAGGTTCTAAATGGTACCTCGGAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGTACCCTTGGCAGGATTCATCATATCAACCTGGTTCGTCTTCATGGTTTCTGCTTTGAGAGACACCTCAGAGCACTTGTTTATGAGTATATGCCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGGATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTTAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCGAAGCTGTCCAACAGAGACAAGACTCATATAACAATGACAGGGTGGAGGGGAACTCGTGGTTATGCTGCACCAGAAGTTTGCCTGCGGTGTCCTATAACTCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGTAGAAGGAGGAACCTAGACCTGAATCTGCCGGAGAGTCAAGACTGGTTTCCAATGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGAAGAACTAATGGTAGTATGTGGTATAGATGAAAAAGATAAAGAGGCAGCAGTGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGCTCTGAGTTGAGGCCTTTGATGAGTGTAGTGGTGAAAATGCTGGAAGGAGCACTTGAAATTCCTAATCCTTCAATTAACCCATTTCAGTACTTGATGCCAGGTACTCCAATCGTGGCTGCATTTCCCGCATATAGCACTAGTGCATTCGACACTGATTCCTCTCAAAAGATAACTGGACATAGCTTCTTGCGTGGTACTCCTATCATGAGGAGATACGAAATTGAAATAGCATCTAGTATGCTGAAGTAA

Protein Analysis

415

Amino Acids

46.83

Weight (kDa)

8.05

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 80 - 345 1.8e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 82 - 275 2.3e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 4 cut(s) 362, 586, 754, 1125
AclWI GGATC 2 cut(s) 73, 131
AcsI RAATTY 2 cut(s) 164, 1056
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 7 cut(s) 63, 331, 373, 785, 1088, 1102, 1195
AfiI CCNNNNNNNGG 3 cut(s) 88, 381, 875
AgsI TTSAA 5 cut(s) 347, 893, 1055, 1071, 1223
AhlI ACTAGT 1 cut(s) 1136
AjnI CCWGG 2 cut(s) 399, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AleI CACNNNNGTG 1 cut(s) 774
AluBI AGCT 9 cut(s) 523, 548, 653, 673, 789, 896, 977, 999, 1182
AluI AGCT 9 cut(s) 523, 548, 653, 673, 789, 896, 977, 999, 1182
Alw21I GWGCWC 3 cut(s) 22, 445, 1051
Alw26I GTCTC 2 cut(s) 424, 678
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 2 cut(s) 73, 131
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 1 cut(s) 1010
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 4 cut(s) 583, 734, 953, 1115
ApoI RAATTY 2 cut(s) 164, 1056
Asp700I GAANNNNTTC 2 cut(s) 522, 618
Asp718I GGTACC 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 232, 911, 1042
AsuII TTCGAA 1 cut(s) 516
AvaI CYCGRG 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 329
BauI CACGAG 1 cut(s) 723
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 3 cut(s) 22, 445, 1051
BbvI GCAGC 4 cut(s) 595, 721, 965, 1102
BccI CCATC 2 cut(s) 203, 873
BciT130I CCWGG 2 cut(s) 401, 1098
BcoDI GTCTC 2 cut(s) 424, 678
BcuI ACTAGT 1 cut(s) 1136
BfaI CTAG 5 cut(s) 549, 833, 905, 1137, 1233
BisI GCNGC 4 cut(s) 584, 735, 954, 1116
BlsI GCNGC 4 cut(s) 585, 736, 955, 1117
BmcAI AGTACT 1 cut(s) 1088
Bme1390I CCNGG 2 cut(s) 401, 1098
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 301, 331, 830
BmrFI CCNGG 2 cut(s) 401, 1098
BmsI GCATC 2 cut(s) 1083, 1238
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 4 cut(s) 48, 80, 706, 738
Bpu14I TTCGAA 1 cut(s) 516
BsaJI CCNNGG 3 cut(s) 333, 376, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 381, 875
Bse1I ACTGG 2 cut(s) 866, 1177
BseBI CCWGG 2 cut(s) 401, 1098
BseDI CCNNGG 3 cut(s) 333, 376, 493
BseGI GGATG 2 cut(s) 634, 884
BseLI CCNNNNNNNGG 3 cut(s) 88, 381, 875
BseMII CTCAG 2 cut(s) 451, 993
BseNI ACTGG 2 cut(s) 866, 1177
BseRI GAGGAG 1 cut(s) 1222
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 4 cut(s) 595, 721, 965, 1102
BseYI CCCAGC 1 cut(s) 250
BsgI GTGCAG 2 cut(s) 291, 720
BshFI GGCC 1 cut(s) 1012
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 3 cut(s) 22, 445, 1051
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 848
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 3 cut(s) 88, 381, 875
BsmAI GTCTC 2 cut(s) 424, 678
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 4 cut(s) 104, 581, 801, 1142
BsnI GGCC 1 cut(s) 1012
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 3 cut(s) 22, 445, 1051
Bsp1407I TGTACA 1 cut(s) 783
Bsp143I GATC 3 cut(s) 78, 123, 810
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 4 cut(s) 362, 586, 754, 1125
BspANI GGCC 1 cut(s) 1012
BspCNI CTCAG 2 cut(s) 450, 994
BspHI TCATGA 2 cut(s) 526, 1203
BspLI GGNNCC 3 cut(s) 301, 331, 830
BspPI GGATC 2 cut(s) 73, 131
BspT104I TTCGAA 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 783
BsrI ACTGG 2 cut(s) 866, 1177
BssECI CCNNGG 3 cut(s) 333, 376, 493
BssMI GATC 3 cut(s) 78, 123, 810
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 2 cut(s) 376, 493
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 2 cut(s) 401, 1098
Bst4CI ACNGT 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 783
BstBI TTCGAA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 581, 752
BstDEI CTNAG 2 cut(s) 437, 1002
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 634, 884
BstKTI GATC 3 cut(s) 81, 126, 813
BstMAI GTCTC 2 cut(s) 424, 678
BstMBI GATC 3 cut(s) 78, 123, 810
BstMWI GCNNNNNNNGC 1 cut(s) 1124
BstNI CCWGG 2 cut(s) 401, 1098
BstSCI CCNGG 2 cut(s) 399, 1096
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 4 cut(s) 595, 721, 965, 1102
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 2 cut(s) 78, 123
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 2 cut(s) 78, 123
BsuRI GGCC 1 cut(s) 1012
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 2 cut(s) 634, 884
BtsI GCAGTG 2 cut(s) 318, 963
BtsIMutI CAGTG 3 cut(s) 318, 963, 1149
Cac8I GCNNGC 2 cut(s) 581, 752
CciI TCATGA 2 cut(s) 526, 1203
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 7 cut(s) 62, 330, 372, 784, 1087, 1101, 1194
CviAII CATG 5 cut(s) 358, 413, 494, 527, 1204
CviQI GTAC 7 cut(s) 62, 330, 372, 784, 1087, 1101, 1194
DdeI CTNAG 2 cut(s) 437, 1002
DpnI GATC 3 cut(s) 80, 125, 812
DpnII GATC 3 cut(s) 78, 123, 810
EciI GGCGGA 1 cut(s) 377
Eco130I CCWWGG 2 cut(s) 376, 493
Eco147I AGGCCT 1 cut(s) 1012
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 399, 1096
EcoT14I CCWWGG 2 cut(s) 376, 493
ErhI CCWWGG 2 cut(s) 376, 493
FaeI CATG 5 cut(s) 361, 416, 497, 530, 1207
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 556
FatI CATG 5 cut(s) 357, 412, 493, 526, 1203
FauI CCCGC 1 cut(s) 1132
Fnu4HI GCNGC 4 cut(s) 584, 735, 954, 1116
FokI GGATG 2 cut(s) 641, 891
Fsp4HI GCNGC 4 cut(s) 584, 735, 954, 1116
FspBI CTAG 5 cut(s) 549, 833, 905, 1137, 1233
GluI GCNGC 4 cut(s) 584, 735, 954, 1116
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 1 cut(s) 1012
HapII CCGG 1 cut(s) 848
Hin1II CATG 5 cut(s) 361, 416, 497, 530, 1207
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 8 cut(s) 112, 148, 385, 513, 691, 841, 853, 1154
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 1 cut(s) 848
HphI GGTGA 3 cut(s) 232, 911, 1042
Hpy166II GTNNAC 5 cut(s) 20, 595, 634, 784, 902
Hpy188I TCNGA 9 cut(s) 35, 117, 130, 147, 200, 222, 337, 440, 1003
Hpy188III TCNNGA 4 cut(s) 258, 527, 857, 1204
Hpy8I GTNNAC 5 cut(s) 20, 595, 634, 784, 902
HpyAV CCTTC 5 cut(s) 102, 310, 816, 1037, 1077
HpyCH4III ACNGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 1124
HpyF3I CTNAG 2 cut(s) 437, 1002
Hsp92II CATG 5 cut(s) 361, 416, 497, 530, 1207
KpnI GGTACC 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 3 cut(s) 78, 123, 810
LmnI GCTCC 1 cut(s) 1046
Lsp1109I GCAGC 4 cut(s) 595, 721, 965, 1102
LweI GCATC 2 cut(s) 1083, 1238
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 5 cut(s) 549, 833, 905, 1137, 1233
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 80, 125, 812
MboI GATC 3 cut(s) 78, 123, 810
MboII GAAGA 6 cut(s) 88, 359, 401, 584, 895, 920
MflI RGATCY 2 cut(s) 78, 123
MhlI GDGCHC 3 cut(s) 22, 445, 1051
MluCI AATT 7 cut(s) 164, 342, 353, 531, 1056, 1071, 1218
MlyI GAGTC 3 cut(s) 142, 685, 862
MmeI TCCRAC 1 cut(s) 702
MroXI GAANNNNTTC 2 cut(s) 522, 618
MseI TTAA 3 cut(s) 171, 633, 1074
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 848
MspR9I CCNGG 2 cut(s) 401, 1098
Mva1269I GAATGC 4 cut(s) 104, 581, 801, 1142
MvaI CCWGG 2 cut(s) 401, 1098
MwoI GCNNNNNNNGC 1 cut(s) 1124
NcoI CCATGG 1 cut(s) 493
NdeII GATC 3 cut(s) 78, 123, 810
NlaIII CATG 5 cut(s) 361, 416, 497, 530, 1207
NlaIV GGNNCC 3 cut(s) 301, 331, 830
NspV TTCGAA 1 cut(s) 516
OliI CACNNNNGTG 1 cut(s) 774
PagI TCATGA 2 cut(s) 526, 1203
PceI AGGCCT 1 cut(s) 1012
PctI GAATGC 4 cut(s) 104, 581, 801, 1142
PdmI GAANNNNTTC 2 cut(s) 522, 618
PfeI GAWTC 5 cut(s) 112, 385, 513, 841, 1154
PkrI GCNGC 4 cut(s) 585, 736, 955, 1117
PleI GAGTC 3 cut(s) 142, 685, 861
PpsI GAGTC 3 cut(s) 142, 685, 861
PsiI TTATAA 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 399, 1096
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 2 cut(s) 399, 1096
PspN4I GGNNCC 3 cut(s) 301, 331, 830
PsuI RGATCY 2 cut(s) 78, 123
RsaI GTAC 7 cut(s) 63, 331, 373, 785, 1088, 1102, 1195
RsaNI GTAC 7 cut(s) 62, 330, 372, 784, 1087, 1101, 1194
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 3 cut(s) 171, 633, 1074
SatI GCNGC 4 cut(s) 584, 735, 954, 1116
Sau3AI GATC 3 cut(s) 78, 123, 810
ScaI AGTACT 1 cut(s) 1088
SchI GAGTC 3 cut(s) 142, 685, 862
ScrFI CCNGG 2 cut(s) 401, 1098
SduI GDGCHC 3 cut(s) 22, 445, 1051
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 2 cut(s) 1083, 1238
SfuI TTCGAA 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 774
SpeI ACTAGT 1 cut(s) 1136
Sse9I AATT 7 cut(s) 164, 342, 353, 531, 1056, 1071, 1218
SseBI AGGCCT 1 cut(s) 1012
SsiI CCGC 4 cut(s) 362, 586, 754, 1125
SspI AATATT 3 cut(s) 87, 288, 619
SspMI CTAG 5 cut(s) 549, 833, 905, 1137, 1233
StuI AGGCCT 1 cut(s) 1012
StyD4I CCNGG 2 cut(s) 399, 1096
StyI CCWWGG 2 cut(s) 376, 493
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 516, 1146
TasI AATT 7 cut(s) 164, 342, 353, 531, 1056, 1071, 1218
TatI WGTACW 3 cut(s) 61, 783, 1086
TfiI GAWTC 5 cut(s) 112, 385, 513, 841, 1154
Tru1I TTAA 3 cut(s) 171, 633, 1074
Tru9I TTAA 3 cut(s) 171, 633, 1074
TscAI CASTG 3 cut(s) 318, 963, 1156
TseI GCWGC 4 cut(s) 583, 734, 953, 1115
TspDTI ATGAA 7 cut(s) 173, 346, 377, 401, 515, 543, 951
TspRI CASTG 3 cut(s) 318, 963, 1156
VneI GTGCAC 1 cut(s) 18
XapI RAATTY 2 cut(s) 164, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 876
XmnI GAANNNNTTC 2 cut(s) 522, 618
XspI CTAG 5 cut(s) 549, 833, 905, 1137, 1233
ZrmI AGTACT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.