RchiOBHm_Chr4g0401511
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19729738 .. 19730728
991 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37341

Sequence Viewer

Length: 597 bp
ATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACGTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGAGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGGCCTTTAATGAGTGGTGTGGTGAAAATGTTGGAAGGAGAAATTGAGATTCCTAGACCTTCAATTAACCCACTTCAGCACTCGTTGCCAGGCACTCCTGTCATGGTATCGTATAGCACTAGTGTCTTCGACACGGATTCCTCTCGAACAATAACTGGTGTTGAAAGATGTTGA

Protein Analysis

198

Amino Acids

22.4

Weight (kDa)

6.75

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 130 1.9e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 131 2.4e-28 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 482
AfiI CCNNNNNNNGG 2 cut(s) 24, 423
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 322, 486, 587
AhlI ACTAGT 1 cut(s) 542
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 367, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 5 cut(s) 166, 191, 296, 316, 392
AluI AGCT 5 cut(s) 166, 191, 296, 316, 392
Alw26I GTCTC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 3 cut(s) 309, 413, 425
ApeKI GCWGC 2 cut(s) 226, 377
Asp700I GAANNNNTTC 2 cut(s) 165, 261
AspS9I GGNCC 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 457
AsuII TTCGAA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 416
BalI TGGCCA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 238, 364
BciT130I CCWGG 2 cut(s) 369, 513
BcoDI GTCTC 1 cut(s) 67
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 3 cut(s) 192, 477, 543
BisI GCNGC 2 cut(s) 227, 378
BlsI GCNGC 2 cut(s) 228, 379
Bme1390I CCNGG 2 cut(s) 369, 513
BmeT110I CYCGRG 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 369, 513
BpiI GAAGAC 1 cut(s) 541
BplI GAGNNNNNCTC 2 cut(s) 349, 381
Bpu14I TTCGAA 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 19, 136
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 423
Bse1I ACTGG 1 cut(s) 583
BseBI CCWGG 2 cut(s) 369, 513
BseDI CCNNGG 2 cut(s) 19, 136
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 24, 423
BseNI ACTGG 1 cut(s) 583
BseXI GCAGC 2 cut(s) 238, 364
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 3 cut(s) 311, 415, 427
BsiHKCI CYCGRG 1 cut(s) 416
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 24, 423
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 3 cut(s) 311, 415, 427
BsoBI CYCGRG 1 cut(s) 416
Bsp119I TTCGAA 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 311, 415, 427
BspHI TCATGA 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 159
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 2 cut(s) 19, 136
BssT1I CCWWGG 2 cut(s) 19, 136
Bst2UI CCWGG 2 cut(s) 369, 513
BstAPI GCANNNNNTGC 1 cut(s) 508
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstNI CCWGG 2 cut(s) 369, 513
BstSCI CCNGG 2 cut(s) 367, 511
BstV1I GCAGC 2 cut(s) 238, 364
BstV2I GAAGAC 1 cut(s) 541
BsuRI GGCC 3 cut(s) 311, 415, 427
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 224
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 414
CviAII CATG 3 cut(s) 137, 170, 526
CviJI RGCY 8 cut(s) 166, 191, 296, 311, 316, 392, 415, 427
CviKI_1 RGCY 8 cut(s) 166, 191, 296, 311, 316, 392, 415, 427
EaeI YGGCCR 1 cut(s) 309
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 19, 136
Eco147I AGGCCT 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 367, 511
EcoT14I CCWWGG 2 cut(s) 19, 136
ErhI CCWWGG 2 cut(s) 19, 136
FaeI CATG 3 cut(s) 140, 173, 529
FaqI GGGAC 1 cut(s) 199
FatI CATG 3 cut(s) 136, 169, 525
Fnu4HI GCNGC 2 cut(s) 227, 378
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 227, 378
FspBI CTAG 3 cut(s) 192, 477, 543
GluI GCNGC 2 cut(s) 227, 378
HaeIII GGCC 3 cut(s) 311, 415, 427
Hin1II CATG 3 cut(s) 140, 173, 529
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 5 cut(s) 28, 156, 334, 472, 560
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 2 cut(s) 170, 567
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 2 cut(s) 452, 492
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 179, 211, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 3 cut(s) 140, 173, 529
Lsp1109I GCAGC 2 cut(s) 238, 364
MaeI CTAG 3 cut(s) 192, 477, 543
MaeII ACGT 1 cut(s) 78
MboII GAAGA 2 cut(s) 227, 541
MfeI CAATTG 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 311
MluCI AATT 4 cut(s) 87, 174, 465, 486
MluNI TGGCCA 1 cut(s) 311
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 4 cut(s) 188, 351, 417, 574
Mox20I TGGCCA 1 cut(s) 311
MroXI GAANNNNTTC 2 cut(s) 165, 261
MscI TGGCCA 1 cut(s) 311
MseI TTAA 2 cut(s) 431, 489
Msp20I TGGCCA 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 369, 513
MunI CAATTG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 224
MvaI CCWGG 2 cut(s) 369, 513
MwoI GCNNNNNNNGC 1 cut(s) 508
NcoI CCATGG 1 cut(s) 136
NlaIII CATG 3 cut(s) 140, 173, 529
NspV TTCGAA 1 cut(s) 159
PagI TCATGA 1 cut(s) 169
PceI AGGCCT 1 cut(s) 427
PctI GAATGC 1 cut(s) 224
PdmI GAANNNNTTC 2 cut(s) 165, 261
PfeI GAWTC 4 cut(s) 28, 156, 472, 560
PkrI GCNGC 2 cut(s) 228, 379
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 367, 511
PspGI CCWGG 2 cut(s) 367, 511
PspPI GGNCC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 431, 489
SatI GCNGC 2 cut(s) 227, 378
Sau96I GGNCC 1 cut(s) 414
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 369, 513
SetI ASST 8 cut(s) 81, 168, 193, 256, 298, 318, 394, 484
SfuI TTCGAA 1 cut(s) 159
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 4 cut(s) 87, 174, 465, 486
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 262
SspMI CTAG 3 cut(s) 192, 477, 543
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 367, 511
StyI CCWWGG 2 cut(s) 19, 136
TaiI ACGT 1 cut(s) 81
TaqI TCGA 3 cut(s) 159, 552, 568
TasI AATT 4 cut(s) 87, 174, 465, 486
TfiI GAWTC 4 cut(s) 28, 156, 472, 560
Tru1I TTAA 2 cut(s) 431, 489
Tru9I TTAA 2 cut(s) 431, 489
TseI GCWGC 2 cut(s) 226, 377
TspDTI ATGAA 3 cut(s) 20, 158, 186
TspGWI ACGGA 1 cut(s) 572
XmnI GAANNNNTTC 2 cut(s) 165, 261
XspI CTAG 3 cut(s) 192, 477, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.