Rw4G008660
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
19039498 .. 19041359
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008660.1

Sequence Viewer

Length: 1269 bp
ATGTCCATAGGTACATGTTCCTTTCAATTTTACCCGAGTGCACGGTCAAACATCGGACTAATAGCCATTCTTGTAGGAGTTGTACTCCTTTTTGTGAAGATCGTAATATTGGTTGCAGAATGCAAAAGAAGGAATCAGAGTAGGATCTCCGATAACCCAAGTTTTCTGACTCTCACAATGAACAAATTTCTGAATGATATGGAAACAGAGAAGCCCATCAGATTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAAATTGCTGGGTTCAGGAGGGTTTGGTGCAGTTTATAAAGGAATATTTAGTAATGGAACCTCTGTGGCAGTGAAGGTTCTAAATGGTACCTCGGAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGTACCCTTGGCAGGATTCATCATATCAACCTGGTTCGTCTTCATGGTTTCTGCTTTGAGAGACACCTCAGAGCACTTGTTTATGAGTATATGCCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTAATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGGATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTTAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCGAAGCTGTCCAACAGAGACAAGACTCATATAACAATGACAGGGTGGAGGGGAACTCGTGGTTATGCTGCACCAGAAGTTTGCCTGCGGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGTAGAAGGAGGAACCTAGACCTGAATCTGCCGGAGAGTCAAGACTGGTTTCCTATGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGAAGAACTAATGGTAGTATGTGGTATAGATGAAAAAGATAAAGAGGCAGCAGTGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGCTCTGAGTTGAGGCCTTTGATGAGTGTAGTGGTGAAAATGCTGGAAGGAGCACTTGAAATTCCTAAGCCTTCAATTAACCCATTTCAGTACTTGATGTCAGGTACTCCAATCGTGGCTGCATTTCCCGCATACAGCACTAGTGCATTCGACAATGATTCCTCTCAAAAGATAACCGGACATAGCTTCTTGCGTGGTACTCCTATCATGAGGAGATACGAAATTGAAATAGCATCTAGTATGCTGAAGTAA

Protein Analysis

422

Amino Acids

47.6

Weight (kDa)

8.47

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 87 - 352 2.4e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 88 - 282 1.4e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AciI CCGC 4 cut(s) 383, 607, 775, 1146
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 185, 1077
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 8 cut(s) 13, 84, 352, 394, 806, 1109, 1123, 1216
AfiI CCNNNNNNNGG 2 cut(s) 402, 896
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 6 cut(s) 26, 368, 914, 1076, 1092, 1244
AhlI ACTAGT 1 cut(s) 1157
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AleI CACNNNNGTG 1 cut(s) 795
AluBI AGCT 9 cut(s) 544, 569, 674, 694, 810, 917, 998, 1020, 1203
AluI AGCT 9 cut(s) 544, 569, 674, 694, 810, 917, 998, 1020, 1203
Alw21I GWGCWC 3 cut(s) 43, 466, 1072
Alw26I GTCTC 2 cut(s) 445, 699
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 1 cut(s) 1031
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 4 cut(s) 604, 755, 974, 1136
ApoI RAATTY 2 cut(s) 185, 1077
Asp700I GAANNNNTTC 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 350
AsuHPI GGTGA 3 cut(s) 253, 932, 1063
AsuII TTCGAA 1 cut(s) 537
AvaI CYCGRG 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 3 cut(s) 43, 466, 1072
BbvI GCAGC 4 cut(s) 616, 742, 986, 1123
BccI CCATC 2 cut(s) 224, 894
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 445, 699
BcuI ACTAGT 1 cut(s) 1157
BfaI CTAG 5 cut(s) 570, 854, 926, 1158, 1254
BisI GCNGC 4 cut(s) 605, 756, 975, 1137
BlsI GCNGC 4 cut(s) 606, 757, 976, 1138
BmcAI AGTACT 1 cut(s) 1109
Bme1390I CCNGG 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 34
BmiI GGNNCC 3 cut(s) 322, 352, 851
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 1259
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 4 cut(s) 69, 101, 727, 759
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 537
BsaJI CCNNGG 3 cut(s) 354, 397, 514
BsaWI WCCGGW 1 cut(s) 1193
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 896
Bse1I ACTGG 1 cut(s) 887
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 3 cut(s) 354, 397, 514
BseGI GGATG 2 cut(s) 655, 905
BseLI CCNNNNNNNGG 2 cut(s) 402, 896
BseMII CTCAG 2 cut(s) 472, 1014
BseNI ACTGG 1 cut(s) 887
BseRI GAGGAG 1 cut(s) 1243
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 4 cut(s) 616, 742, 986, 1123
BseYI CCCAGC 1 cut(s) 271
BsgI GTGCAG 2 cut(s) 312, 741
BshFI GGCC 1 cut(s) 1033
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 3 cut(s) 43, 466, 1072
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 869, 1194
BslFI GGGAC 1 cut(s) 577
BslI CCNNNNNNNGG 2 cut(s) 402, 896
BsmAI GTCTC 2 cut(s) 445, 699
BsmFI GGGAC 1 cut(s) 577
BsmI GAATGC 4 cut(s) 125, 602, 822, 1163
BsnI GGCC 1 cut(s) 1033
BsoBI CYCGRG 1 cut(s) 34
Bsp119I TTCGAA 1 cut(s) 537
Bsp1286I GDGCHC 3 cut(s) 43, 466, 1072
Bsp1407I TGTACA 1 cut(s) 804
Bsp143I GATC 3 cut(s) 99, 144, 831
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 4 cut(s) 383, 607, 775, 1146
BspANI GGCC 1 cut(s) 1033
BspCNI CTCAG 2 cut(s) 471, 1015
BspHI TCATGA 1 cut(s) 1224
BspLI GGNNCC 3 cut(s) 322, 352, 851
BspPI GGATC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 350
BsrGI TGTACA 1 cut(s) 804
BsrI ACTGG 1 cut(s) 887
BssECI CCNNGG 3 cut(s) 354, 397, 514
BssMI GATC 3 cut(s) 99, 144, 831
BssSI CACGAG 1 cut(s) 744
BssT1I CCWWGG 2 cut(s) 397, 514
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 45
BstAUI TGTACA 1 cut(s) 804
BstBI TTCGAA 1 cut(s) 537
BstC8I GCNNGC 2 cut(s) 602, 773
BstDEI CTNAG 3 cut(s) 458, 1023, 1083
BstDSI CCRYGG 1 cut(s) 514
BstF5I GGATG 2 cut(s) 655, 905
BstKTI GATC 3 cut(s) 102, 147, 834
BstMAI GTCTC 2 cut(s) 445, 699
BstMBI GATC 3 cut(s) 99, 144, 831
BstMWI GCNNNNNNNGC 1 cut(s) 1145
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 43
BstV1I GCAGC 4 cut(s) 616, 742, 986, 1123
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 1033
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 655, 905
BtsI GCAGTG 2 cut(s) 339, 984
BtsIMutI CAGTG 2 cut(s) 339, 984
Cac8I GCNNGC 2 cut(s) 602, 773
CciI TCATGA 1 cut(s) 1224
CsiI ACCWGGT 1 cut(s) 420
Csp6I GTAC 8 cut(s) 12, 83, 351, 393, 805, 1108, 1122, 1215
CviAII CATG 5 cut(s) 15, 379, 434, 515, 1225
CviQI GTAC 8 cut(s) 12, 83, 351, 393, 805, 1108, 1122, 1215
DdeI CTNAG 3 cut(s) 458, 1023, 1083
DpnI GATC 3 cut(s) 101, 146, 833
DpnII GATC 3 cut(s) 99, 144, 831
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 2 cut(s) 397, 514
Eco147I AGGCCT 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 2 cut(s) 397, 514
ErhI CCWWGG 2 cut(s) 397, 514
FaeI CATG 5 cut(s) 18, 382, 437, 518, 1228
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 1 cut(s) 577
FatI CATG 5 cut(s) 14, 378, 433, 514, 1224
FauI CCCGC 1 cut(s) 1153
Fnu4HI GCNGC 4 cut(s) 605, 756, 975, 1137
FokI GGATG 2 cut(s) 662, 912
Fsp4HI GCNGC 4 cut(s) 605, 756, 975, 1137
FspBI CTAG 5 cut(s) 570, 854, 926, 1158, 1254
GluI GCNGC 4 cut(s) 605, 756, 975, 1137
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 1033
HapII CCGG 2 cut(s) 869, 1194
Hin1II CATG 5 cut(s) 18, 382, 437, 518, 1228
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 8 cut(s) 133, 169, 406, 534, 712, 862, 874, 1175
HpaI GTTAAC 1 cut(s) 655
HpaII CCGG 2 cut(s) 869, 1194
HphI GGTGA 3 cut(s) 253, 932, 1063
Hpy166II GTNNAC 5 cut(s) 41, 616, 655, 805, 923
Hpy188III TCNNGA 3 cut(s) 279, 878, 1225
Hpy8I GTNNAC 5 cut(s) 41, 616, 655, 805, 923
HpyAV CCTTC 5 cut(s) 123, 331, 837, 1058, 1098
HpyCH4III ACNGT 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 1145
HpyF3I CTNAG 3 cut(s) 458, 1023, 1083
Hsp92II CATG 5 cut(s) 18, 382, 437, 518, 1228
KpnI GGTACC 1 cut(s) 354
KspAI GTTAAC 1 cut(s) 655
Kzo9I GATC 3 cut(s) 99, 144, 831
LmnI GCTCC 1 cut(s) 1067
Lsp1109I GCAGC 4 cut(s) 616, 742, 986, 1123
LweI GCATC 1 cut(s) 1259
MabI ACCWGGT 1 cut(s) 420
MaeI CTAG 5 cut(s) 570, 854, 926, 1158, 1254
MalI GATC 3 cut(s) 101, 146, 833
MboI GATC 3 cut(s) 99, 144, 831
MboII GAAGA 6 cut(s) 109, 380, 422, 605, 916, 941
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 3 cut(s) 43, 466, 1072
MluCI AATT 9 cut(s) 26, 185, 266, 363, 374, 552, 1077, 1092, 1239
MlyI GAGTC 3 cut(s) 163, 706, 883
MmeI TCCRAC 1 cut(s) 723
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 3 cut(s) 546, 654, 1095
MslI CAYNNNNRTG 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 607
MspI CCGG 2 cut(s) 869, 1194
MspR9I CCNGG 1 cut(s) 422
Mva1269I GAATGC 4 cut(s) 125, 602, 822, 1163
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 1145
NcoI CCATGG 1 cut(s) 514
NdeII GATC 3 cut(s) 99, 144, 831
NlaIII CATG 5 cut(s) 18, 382, 437, 518, 1228
NlaIV GGNNCC 3 cut(s) 322, 352, 851
NspI RCATGY 1 cut(s) 18
NspV TTCGAA 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 795
PagI TCATGA 1 cut(s) 1224
PceI AGGCCT 1 cut(s) 1033
PciI ACATGT 1 cut(s) 14
PctI GAATGC 4 cut(s) 125, 602, 822, 1163
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 5 cut(s) 133, 406, 534, 862, 1175
PkrI GCNGC 4 cut(s) 606, 757, 976, 1138
PleI GAGTC 3 cut(s) 163, 706, 882
PpsI GAGTC 3 cut(s) 163, 706, 882
PscI ACATGT 1 cut(s) 14
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 420
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 322, 352, 851
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 8 cut(s) 13, 84, 352, 394, 806, 1109, 1123, 1216
RsaNI GTAC 8 cut(s) 12, 83, 351, 393, 805, 1108, 1122, 1215
RseI CAYNNNNRTG 1 cut(s) 795
SaqAI TTAA 3 cut(s) 546, 654, 1095
SatI GCNGC 4 cut(s) 605, 756, 975, 1137
Sau3AI GATC 3 cut(s) 99, 144, 831
ScaI AGTACT 1 cut(s) 1109
SchI GAGTC 3 cut(s) 163, 706, 883
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 3 cut(s) 43, 466, 1072
SexAI ACCWGGT 1 cut(s) 420
SfaNI GCATC 1 cut(s) 1259
SfuI TTCGAA 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 795
SpeI ACTAGT 1 cut(s) 1157
Sse9I AATT 9 cut(s) 26, 185, 266, 363, 374, 552, 1077, 1092, 1239
SseBI AGGCCT 1 cut(s) 1033
SsiI CCGC 4 cut(s) 383, 607, 775, 1146
SspI AATATT 3 cut(s) 108, 309, 640
SspMI CTAG 5 cut(s) 570, 854, 926, 1158, 1254
StuI AGGCCT 1 cut(s) 1033
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 397, 514
TaaI ACNGT 1 cut(s) 45
TaqI TCGA 2 cut(s) 537, 1167
TasI AATT 9 cut(s) 26, 185, 266, 363, 374, 552, 1077, 1092, 1239
TatI WGTACW 3 cut(s) 82, 804, 1107
TfiI GAWTC 5 cut(s) 133, 406, 534, 862, 1175
Tru1I TTAA 3 cut(s) 546, 654, 1095
Tru9I TTAA 3 cut(s) 546, 654, 1095
TscAI CASTG 2 cut(s) 339, 984
TseI GCWGC 4 cut(s) 604, 755, 974, 1136
TspDTI ATGAA 6 cut(s) 194, 367, 398, 422, 564, 972
TspRI CASTG 2 cut(s) 339, 984
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 2 cut(s) 185, 1077
XceI RCATGY 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 5 cut(s) 570, 854, 926, 1158, 1254
ZrmI AGTACT 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.