MD13G1251000.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
26647831 .. 26649607
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1251000.v1.1.491

Sequence Viewer

Length: 1308 bp
ATGTCGAGTCCAGATTCATCATCATCATCATCAAGTGGTGGAGAAACAGCAGCTATTGCTATAGCCATGGTGGTGATCTTAGTCAAGATCGTTATCGCAATTGCAGTGTGTCAGAAATGTAAGGAAATAGCAGAAAAGAAACGAATTCAGAATAGTAGCTTAGTGAAGATCGCAAGTCCAGACTTTCGGGCACTCACAATGGACAACTTCCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTCACTTCTCAACAGCTCCGGATTGCTACCGATAACTTCACTAATCTGTTGGGCCAAGGAGGATTTGGTGCAGTTTATAAAGGAATATTTAGCAATGGAACTCTTGTAGCAGTGAAGGTTCTATATGGAAGTTCGGATAAGAGAATCAAGGAACAATTTATGGCGGAAGTTAGTACAATCGGAAGAACCCATCACTTCAATCTGGTCCGTCTTTATGGTTTCTGCTTCGAGGAACACCTCAGAGCACTTGTTTACGAGTACATGGGAAATGGATCGCTTGACAAGTACTTATTTAGTACCAACACGGTGGCGTTAGGATTTGAAAAGCTTCATGAGATTGCTGTGGGGACAGCAAGAGGGATCGCTTACTTGCACGAAGAATGCCAACAGCGGATTGTCCATTACGACATAAAGCCTGAAAATATTCTATTGGATGCAAACTTCTTTCCAAAAGTAGCTGACTTCGGTTTGGCCAAGTTGTGTAACAGGGAAAATACTCATATAACCATGACAGGGGGGAGAGGGACTCCGGGTTATGCTGCACCGGAAGTTTGGCTGAGGTTTCCTATAACACATAAATGTGATGTCTACAGCTTTGGAATGCTATTGTTCGAGATCATAGGAAGGAGAAGGAATCTCGACGTCAATAGTCAAGATAGCCAAGATTGGTTCCCGAGGTGGGTATGGAAGAAGTTTGAACCGGGGGAATTAGGAGAGCTAATGGTAGTTTGTGGAATAGAGGAGAAAGATAAAGAGAGGGCAGAGAGAATGGTAAAGTTAGCTCTGTGGTGTGTACAGTACATGCCCGAGGCAAGGCCTTTGATGAGTATCGTTGTTAAAATGTTGGAAGGTGCAGTTGAGATTCCTACACCTTCAACTAACCCTTTCCAGCACTTGATGTCGGACACTCCGTACCCTACTGCACCTGTCTATGATACTTCAAATCCAACAGACAGTACCGCCAGTGATTTTTGTTCGGTTCCTTATCAAACTGTAACTGGACATAGCGTCGTCAGTGGTACTCCTATCATGAAGAAATATGAGATTGAAATAGTGTCTGCCTAG

Protein Analysis

436

Amino Acids

48.68

Weight (kDa)

6.39

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 94 - 362 1.7e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 96 - 355 2.6e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AatII GACGTC 1 cut(s) 888
AccI GTMKAC 1 cut(s) 831
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 3 cut(s) 407, 634, 1203
AclWI GGATC 2 cut(s) 523, 611
AcoI YGGCCR 1 cut(s) 714
AcsI RAATTY 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 885
AfaI GTAC 9 cut(s) 418, 503, 530, 541, 1038, 1043, 1157, 1201, 1264
AfiI CCNNNNNNNGG 3 cut(s) 756, 922, 1056
AgsI TTSAA 6 cut(s) 442, 566, 941, 1119, 1185, 1292
AhdI GACNNNNNGTC 1 cut(s) 1250
AluBI AGCT 8 cut(s) 53, 159, 259, 571, 701, 837, 961, 1025
AluI AGCT 8 cut(s) 53, 159, 259, 571, 701, 837, 961, 1025
Alw21I GWGCWC 1 cut(s) 490
AlwI GGATC 2 cut(s) 523, 611
Ama87I CYCGRG 2 cut(s) 916, 1049
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 3 cut(s) 295, 714, 1058
ApeKI GCWGC 2 cut(s) 50, 782
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 2 cut(s) 570, 666
AspS9I GGNCC 2 cut(s) 295, 448
AsuC2I CCSGG 2 cut(s) 774, 945
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 2 cut(s) 916, 1049
AvaII GGWCC 1 cut(s) 448
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 490
BbvCI CCTCAGC 1 cut(s) 800
BbvI GCAGC 2 cut(s) 62, 769
BccI CCATC 2 cut(s) 245, 441
BcnI CCSGG 2 cut(s) 774, 945
BfaI CTAG 1 cut(s) 1306
BfmI CTRYAG 2 cut(s) 60, 832
BisI GCNGC 2 cut(s) 51, 783
BlsI GCNGC 2 cut(s) 52, 784
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 2 cut(s) 774, 945
Bme18I GGWCC 1 cut(s) 448
BmeRI GACNNNNNGTC 1 cut(s) 1250
BmeT110I CYCGRG 2 cut(s) 916, 1049
BmgT120I GGNCC 2 cut(s) 295, 448
BmiI GGNNCC 2 cut(s) 914, 1224
BmrFI CCNGG 2 cut(s) 774, 945
BmsI GCATC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 754, 786
Bpu10I CCTNAGC 1 cut(s) 800
BpuMI CCSGG 2 cut(s) 774, 945
BsaBI GATNNNNATC 2 cut(s) 92, 1070
BsaHI GRCGYC 1 cut(s) 885
BsaJI CCNNGG 5 cut(s) 66, 298, 917, 944, 1050
BsaWI WCCGGW 2 cut(s) 261, 787
Bsc4I CCNNNNNNNGG 3 cut(s) 756, 922, 1056
Bse1I ACTGG 2 cut(s) 1206, 1246
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 2 cut(s) 92, 1070
BseAI TCCGGA 1 cut(s) 261
BseDI CCNNGG 5 cut(s) 66, 298, 917, 944, 1050
BseGI GGATG 1 cut(s) 682
BseJI GATNNNNATC 2 cut(s) 92, 1070
BseLI CCNNNNNNNGG 3 cut(s) 756, 922, 1056
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 496, 791
BseNI ACTGG 2 cut(s) 1206, 1246
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 2 cut(s) 62, 769
BsgI GTGCAG 4 cut(s) 333, 768, 1116, 1149
BshFI GGCC 3 cut(s) 297, 716, 1060
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 916, 1049
BsiSI CCGG 4 cut(s) 262, 773, 788, 944
BslFI GGGAC 2 cut(s) 604, 781
BslI CCNNNNNNNGG 3 cut(s) 756, 922, 1056
BsmFI GGGAC 2 cut(s) 604, 781
BsmI GAATGC 2 cut(s) 629, 849
BsnI GGCC 3 cut(s) 297, 716, 1060
BsoBI CYCGRG 2 cut(s) 916, 1049
Bsp1286I GDGCHC 2 cut(s) 193, 490
Bsp13I TCCGGA 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 1036
Bsp143I GATC 6 cut(s) 75, 87, 168, 515, 603, 858
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 3 cut(s) 407, 634, 1203
BspANI GGCC 3 cut(s) 297, 716, 1060
BspCNI CTCAG 2 cut(s) 495, 792
BspEI TCCGGA 1 cut(s) 261
BspHI TCATGA 2 cut(s) 574, 1272
BspLI GGNNCC 2 cut(s) 914, 1224
BspPI GGATC 2 cut(s) 523, 611
BsrDI GCAATG 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 1036
BsrI ACTGG 2 cut(s) 1206, 1246
BssECI CCNNGG 5 cut(s) 66, 298, 917, 944, 1050
BssMI GATC 6 cut(s) 75, 87, 168, 515, 603, 858
BssNI GRCGYC 1 cut(s) 885
BssT1I CCWWGG 2 cut(s) 66, 298
Bst4CI ACNGT 4 cut(s) 550, 1041, 1199, 1237
BstACI GRCGYC 1 cut(s) 885
BstAPI GCANNNNNTGC 1 cut(s) 56
BstAUI TGTACA 1 cut(s) 1036
BstDEI CTNAG 4 cut(s) 79, 160, 482, 800
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 682
BstKTI GATC 6 cut(s) 78, 90, 171, 518, 606, 861
BstMBI GATC 6 cut(s) 75, 87, 168, 515, 603, 858
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 1048
BstSCI CCNGG 2 cut(s) 772, 943
BstSFI CTRYAG 2 cut(s) 60, 832
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 2 cut(s) 62, 769
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 3 cut(s) 297, 716, 1060
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 682
BtsI GCAGTG 2 cut(s) 111, 360
BtsIMutI CAGTG 4 cut(s) 111, 360, 1213, 1264
CciI TCATGA 2 cut(s) 574, 1272
Cfr13I GGNCC 2 cut(s) 295, 448
CseI GACGC 1 cut(s) 1240
Csp6I GTAC 9 cut(s) 417, 502, 529, 540, 1037, 1042, 1156, 1200, 1263
CviAII CATG 6 cut(s) 67, 505, 575, 751, 1045, 1273
CviQI GTAC 9 cut(s) 417, 502, 529, 540, 1037, 1042, 1156, 1200, 1263
DdeI CTNAG 4 cut(s) 79, 160, 482, 800
DpnI GATC 6 cut(s) 77, 89, 170, 517, 605, 860
DpnII GATC 6 cut(s) 75, 87, 168, 515, 603, 858
DriI GACNNNNNGTC 1 cut(s) 1250
EaeI YGGCCR 1 cut(s) 714
Eam1105I GACNNNNNGTC 1 cut(s) 1250
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 2 cut(s) 66, 298
Eco147I AGGCCT 1 cut(s) 1060
Eco47I GGWCC 1 cut(s) 448
Eco88I CYCGRG 2 cut(s) 916, 1049
EcoRI GAATTC 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 66, 298
ErhI CCWWGG 2 cut(s) 66, 298
FaeI CATG 6 cut(s) 70, 508, 578, 754, 1048, 1276
FaqI GGGAC 2 cut(s) 604, 781
FatI CATG 6 cut(s) 66, 504, 574, 750, 1044, 1272
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 2 cut(s) 51, 783
FokI GGATG 1 cut(s) 689
Fsp4HI GCNGC 2 cut(s) 51, 783
FspBI CTAG 1 cut(s) 1306
GluI GCNGC 2 cut(s) 51, 783
HaeIII GGCC 3 cut(s) 297, 716, 1060
HapII CCGG 4 cut(s) 262, 773, 788, 944
HgaI GACGC 1 cut(s) 1240
Hin1I GRCGYC 1 cut(s) 885
Hin1II CATG 6 cut(s) 70, 508, 578, 754, 1048, 1276
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 6 cut(s) 7, 14, 387, 769, 877, 1105
HpaII CCGG 4 cut(s) 262, 773, 788, 944
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 246, 496, 832, 1037
Hpy188I TCNGA 6 cut(s) 114, 150, 379, 425, 485, 1147
Hpy8I GTNNAC 4 cut(s) 246, 496, 832, 1037
Hpy99I CGWCG 2 cut(s) 887, 1256
HpyAV CCTTC 5 cut(s) 352, 861, 867, 1085, 1125
HpyCH4III ACNGT 4 cut(s) 550, 1041, 1199, 1237
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 7 cut(s) 104, 314, 616, 680, 785, 1097, 1166
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 4 cut(s) 79, 160, 482, 800
HpySE526I ACGT 1 cut(s) 885
Hsp92I GRCGYC 1 cut(s) 885
Hsp92II CATG 6 cut(s) 70, 508, 578, 754, 1048, 1276
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 6 cut(s) 75, 87, 168, 515, 603, 858
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 2 cut(s) 62, 769
LweI GCATC 1 cut(s) 667
MaeI CTAG 1 cut(s) 1306
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 2 cut(s) 725, 1237
MalI GATC 6 cut(s) 77, 89, 170, 517, 605, 860
MboI GATC 6 cut(s) 75, 87, 168, 515, 603, 858
MboII GAAGA 5 cut(s) 178, 438, 632, 943, 1288
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 193, 490
MlsI TGGCCA 1 cut(s) 716
MluCI AATT 4 cut(s) 99, 144, 398, 950
MluNI TGGCCA 1 cut(s) 716
MlyI GAGTC 2 cut(s) 16, 763
MmeI TCCRAC 3 cut(s) 1068, 1125, 1214
Mox20I TGGCCA 1 cut(s) 716
MroI TCCGGA 1 cut(s) 261
MroXI GAANNNNTTC 2 cut(s) 570, 666
MscI TGGCCA 1 cut(s) 716
MseI TTAA 1 cut(s) 1080
MslI CAYNNNNRTG 3 cut(s) 71, 820, 822
Msp20I TGGCCA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 4 cut(s) 262, 773, 788, 944
MspR9I CCNGG 2 cut(s) 774, 945
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 2 cut(s) 629, 849
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 2 cut(s) 774, 945
NcoI CCATGG 1 cut(s) 66
NdeII GATC 6 cut(s) 75, 87, 168, 515, 603, 858
NlaIII CATG 6 cut(s) 70, 508, 578, 754, 1048, 1276
NlaIV GGNNCC 2 cut(s) 914, 1224
NspI RCATGY 1 cut(s) 1048
PagI TCATGA 2 cut(s) 574, 1272
PceI AGGCCT 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 1151
PctI GAATGC 2 cut(s) 629, 849
PdmI GAANNNNTTC 2 cut(s) 570, 666
PfeI GAWTC 4 cut(s) 14, 387, 877, 1105
PkrI GCNGC 2 cut(s) 52, 784
PleI GAGTC 2 cut(s) 15, 763
PpsI GAGTC 2 cut(s) 15, 763
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 914, 1224
PspPI GGNCC 2 cut(s) 295, 448
RsaI GTAC 9 cut(s) 418, 503, 530, 541, 1038, 1043, 1157, 1201, 1264
RsaNI GTAC 9 cut(s) 417, 502, 529, 540, 1037, 1042, 1156, 1200, 1263
RseI CAYNNNNRTG 3 cut(s) 71, 820, 822
SaqAI TTAA 1 cut(s) 1080
SatI GCNGC 2 cut(s) 51, 783
Sau3AI GATC 6 cut(s) 75, 87, 168, 515, 603, 858
Sau96I GGNCC 2 cut(s) 295, 448
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 2 cut(s) 16, 763
ScrFI CCNGG 2 cut(s) 774, 945
SduI GDGCHC 2 cut(s) 193, 490
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 60, 832
SinI GGWCC 1 cut(s) 448
SmiMI CAYNNNNRTG 3 cut(s) 71, 820, 822
Sse9I AATT 4 cut(s) 99, 144, 398, 950
SseBI AGGCCT 1 cut(s) 1060
SsiI CCGC 3 cut(s) 407, 634, 1203
SspI AATATT 2 cut(s) 330, 667
SspMI CTAG 1 cut(s) 1306
StuI AGGCCT 1 cut(s) 1060
StyD4I CCNGG 2 cut(s) 772, 943
StyI CCWWGG 2 cut(s) 66, 298
TaaI ACNGT 4 cut(s) 550, 1041, 1199, 1237
TaiI ACGT 1 cut(s) 888
TaqI TCGA 4 cut(s) 5, 471, 855, 882
TasI AATT 4 cut(s) 99, 144, 398, 950
TatI WGTACW 5 cut(s) 416, 501, 528, 1036, 1041
TfiI GAWTC 4 cut(s) 14, 387, 877, 1105
Tru1I TTAA 1 cut(s) 1080
Tru9I TTAA 1 cut(s) 1080
TscAI CASTG 4 cut(s) 111, 360, 1213, 1264
TseI GCWGC 2 cut(s) 50, 782
TspDTI ATGAA 3 cut(s) 6, 563, 1289
TspGWI ACGGA 2 cut(s) 440, 1143
TspRI CASTG 4 cut(s) 111, 360, 1213, 1264
VpaK11BI GGWCC 1 cut(s) 448
XapI RAATTY 1 cut(s) 144
XceI RCATGY 1 cut(s) 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 2 cut(s) 570, 666
XspI CTAG 1 cut(s) 1306
ZraI GACGTC 1 cut(s) 886
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.