Rh4AG107600
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
23349463 .. 23352005
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG107600.1

Sequence Viewer

Length: 258 bp
ATGTCGACTGGAGTTGTTACTGTTGTAGCATTAGTAGTTGTCTCTGTGATGATTGCTATCATAGTTGTATACAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTCTTACATGATCCAAGCTTTTCGACACTCACAATGGACAATTTTCTAAATGATATAGAAAGAGAGAGGCCCATGACGTTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGTTTCTAA

Protein Analysis

85

Amino Acids

9.48

Weight (kDa)

4.75

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 69
AclWI GGATC 2 cut(s) 101, 116
AcuI CTGAAG 1 cut(s) 191
AluBI AGCT 2 cut(s) 99, 129
AluI AGCT 2 cut(s) 99, 129
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 101, 116
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 220
BbvI GCAGC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 13, 110
Bse8I GATNNNNATC 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 56
BseNI ACTGG 2 cut(s) 13, 110
BseXI GCAGC 1 cut(s) 108
BseYI CCCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 46
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 106, 121
BspANI GGCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 101, 116
BsrI ACTGG 2 cut(s) 13, 110
BssMI GATC 2 cut(s) 106, 121
BssNAI GTATAC 1 cut(s) 70
Bst1107I GTATAC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 22
BstKTI GATC 2 cut(s) 109, 124
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 106, 121
BstV1I GCAGC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 238
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 2 cut(s) 119, 184
CviJI RGCY 3 cut(s) 99, 129, 181
CviKI_1 RGCY 3 cut(s) 99, 129, 181
DpnI GATC 2 cut(s) 108, 123
DpnII GATC 2 cut(s) 106, 121
Eco57I CTGAAG 1 cut(s) 191
FaeI CATG 2 cut(s) 122, 187
FaiI YATR 6 cut(s) 62, 70, 81, 120, 167, 185
FatI CATG 2 cut(s) 118, 183
FblI GTMKAC 2 cut(s) 5, 69
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 97
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 181
Hin1II CATG 2 cut(s) 122, 187
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 127
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 6, 70, 192
Hpy188I TCNGA 2 cut(s) 103, 210
Hpy188III TCNNGA 2 cut(s) 86, 246
Hpy8I GTNNAC 3 cut(s) 6, 70, 192
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 2 cut(s) 91, 188
HpyCH4V TGCA 1 cut(s) 215
HpySE526I ACGT 2 cut(s) 91, 188
Hsp92II CATG 2 cut(s) 122, 187
Kzo9I GATC 2 cut(s) 106, 121
LpnPI CCDG 4 cut(s) 58, 123, 224, 231
Lsp1109I GCAGC 1 cut(s) 108
MaeII ACGT 2 cut(s) 91, 188
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 108, 123
MboI GATC 2 cut(s) 106, 121
MluCI AATT 1 cut(s) 151
MnlI CCTC 2 cut(s) 171, 242
NdeII GATC 2 cut(s) 106, 121
NlaIII CATG 2 cut(s) 122, 187
PkrI GCNGC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 2 cut(s) 106, 121
Sau96I GGNCC 1 cut(s) 180
SetI ASST 5 cut(s) 94, 101, 131, 191, 253
SgeI CNNG 9 cut(s) 21, 85, 98, 122, 131, 138, 196, 247, 251
Sse9I AATT 1 cut(s) 151
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 2 cut(s) 94, 191
TaqI TCGA 2 cut(s) 5, 134
TasI AATT 1 cut(s) 151
TseI GCWGC 1 cut(s) 96
XmiI GTMKAC 2 cut(s) 5, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.