Rw4G008710
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
19158543 .. 19159757
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008710.1

Sequence Viewer

Length: 1215 bp
ATGATTGCTATCATAGTTGTATACAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTCTCTCATGATCCAATCTTTTCGACACCCACAATGGACAATTTTCTAATTGATATAGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCTACTTGCTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACCTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTGCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCGGTTGGGACAGCTAAAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGAGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCAGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACCTAGACGACAATCTTCCGGAGAGTCGAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCCGGAGAACTAGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAACATAGAGAGGCAGCGGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGGCCTTTAATGAGTGCTGTGGTGAAAATGTTGGAAGGAGGAACTGAGATTCCTAGACCTTCAATTAACCCAATTCAGCACTCGTTGTCAGGCACTCCTGTCATGTCATCGTATAGCACTAGTGTCTTCGACACGGATTCCTCTCATACAACAAGTGGTGTTGGCACTAGTGTCACGGATTCCTCTCATACAACAAGTGGTGTTGGCGCTAGTGTCTTAAACACGGATTCCTCTCATACAACAATCGGTGTTGAAGGATGTTGA

Protein Analysis

404

Amino Acids

45.27

Weight (kDa)

6.21

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 63 - 328 2.2e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 63 - 260 1.5e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 790
AciI CCGC 3 cut(s) 305, 479, 899
AclWI GGATC 2 cut(s) 53, 68
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 2 cut(s) 271, 728
AfiI CCNNNNNNNGG 3 cut(s) 324, 818, 951
AgsI TTSAA 5 cut(s) 290, 622, 836, 1014, 1205
AhlI ACTAGT 2 cut(s) 1070, 1118
AjnI CCWGG 1 cut(s) 667
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AleI CACNNNNGTG 1 cut(s) 717
AloI GAACNNNNNNTCC 2 cut(s) 985, 1017
AluBI AGCT 8 cut(s) 51, 466, 491, 596, 616, 732, 856, 920
AluI AGCT 8 cut(s) 51, 466, 491, 596, 616, 732, 856, 920
Alw26I GTCTC 3 cut(s) 70, 367, 795
AlwI GGATC 2 cut(s) 53, 68
Ama87I CYCGRG 1 cut(s) 944
Aor13HI TCCGGA 1 cut(s) 790
AoxI GGCC 3 cut(s) 609, 941, 953
ApeKI GCWGC 5 cut(s) 48, 526, 677, 694, 896
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 2 cut(s) 465, 561
Asp718I GGTACC 1 cut(s) 269
AspLEI GCGC 1 cut(s) 1160
AspS9I GGNCC 2 cut(s) 259, 942
AsuHPI GGTGA 2 cut(s) 172, 985
AsuII TTCGAA 1 cut(s) 459
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 1069
BbvI GCAGC 5 cut(s) 60, 538, 664, 681, 908
BccI CCATC 2 cut(s) 143, 816
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 3 cut(s) 70, 367, 795
BcuI ACTAGT 2 cut(s) 1070, 1118
BfaI CTAG 7 cut(s) 776, 848, 863, 1005, 1071, 1119, 1161
BfmI CTRYAG 1 cut(s) 695
BfoI RGCGCY 1 cut(s) 1161
BisI GCNGC 5 cut(s) 49, 527, 678, 695, 897
BlsI GCNGC 5 cut(s) 50, 528, 679, 696, 898
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 944
BmgT120I GGNCC 2 cut(s) 259, 942
BmiI GGNNCC 3 cut(s) 241, 271, 773
BmrFI CCNGG 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 1069
BplI GAGNNNNNCTC 2 cut(s) 649, 681
Bpu14I TTCGAA 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 273, 319, 436, 812
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 818, 951
Bse1I ACTGG 2 cut(s) 62, 809
Bse8I GATNNNNATC 1 cut(s) 8
BseAI TCCGGA 1 cut(s) 790
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 4 cut(s) 273, 319, 436, 812
BseGI GGATG 3 cut(s) 577, 827, 1214
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 324, 818, 951
BseMII CTCAG 2 cut(s) 394, 987
BseNI ACTGG 2 cut(s) 62, 809
BseRI GAGGAG 1 cut(s) 893
BseXI GCAGC 5 cut(s) 60, 538, 664, 681, 908
BseYI CCCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 663
BshFI GGCC 3 cut(s) 611, 943, 955
BshNI GGYRCC 1 cut(s) 269
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 2 cut(s) 791, 840
BslFI GGGAC 1 cut(s) 499
BslI CCNNNNNNNGG 3 cut(s) 324, 818, 951
BsmAI GTCTC 3 cut(s) 70, 367, 795
BsmFI GGGAC 1 cut(s) 499
BsmI GAATGC 2 cut(s) 524, 744
BsnI GGCC 3 cut(s) 611, 943, 955
BsoBI CYCGRG 1 cut(s) 944
Bsp119I TTCGAA 1 cut(s) 459
Bsp13I TCCGGA 1 cut(s) 790
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 3 cut(s) 58, 73, 753
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 3 cut(s) 305, 479, 899
BspANI GGCC 3 cut(s) 611, 943, 955
BspCNI CTCAG 2 cut(s) 393, 988
BspEI TCCGGA 1 cut(s) 790
BspHI TCATGA 2 cut(s) 70, 469
BspLI GGNNCC 3 cut(s) 241, 271, 773
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 2 cut(s) 53, 68
BspT104I TTCGAA 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 2 cut(s) 62, 809
BssECI CCNNGG 4 cut(s) 273, 319, 436, 812
BssMI GATC 3 cut(s) 58, 73, 753
BssNAI GTATAC 1 cut(s) 22
BssT1I CCWWGG 3 cut(s) 319, 436, 812
Bst1107I GTATAC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 669
BstAUI TGTACA 1 cut(s) 726
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 2 cut(s) 380, 996
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 3 cut(s) 577, 827, 1214
BstH2I RGCGCY 1 cut(s) 1161
BstHHI GCGC 1 cut(s) 1160
BstKTI GATC 3 cut(s) 61, 76, 756
BstMAI GTCTC 3 cut(s) 70, 367, 795
BstMBI GATC 3 cut(s) 58, 73, 753
BstNI CCWGG 1 cut(s) 669
BstSCI CCNGG 1 cut(s) 667
BstSFI CTRYAG 1 cut(s) 695
BstV1I GCAGC 5 cut(s) 60, 538, 664, 681, 908
BstV2I GAAGAC 1 cut(s) 1069
BstXI CCANNNNNNTGG 1 cut(s) 690
BstZ17I GTATAC 1 cut(s) 22
BsuRI GGCC 3 cut(s) 611, 943, 955
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 3 cut(s) 577, 827, 1214
BtsI GCAGTG 2 cut(s) 258, 704
BtsIMutI CAGTG 2 cut(s) 258, 704
Cac8I GCNNGC 1 cut(s) 524
CciI TCATGA 2 cut(s) 70, 469
CfoI GCGC 1 cut(s) 1160
Cfr13I GGNCC 2 cut(s) 259, 942
Csp6I GTAC 2 cut(s) 270, 727
CviAII CATG 5 cut(s) 71, 301, 437, 470, 1054
CviQI GTAC 2 cut(s) 270, 727
DdeI CTNAG 2 cut(s) 380, 996
DpnI GATC 3 cut(s) 60, 75, 755
DpnII GATC 3 cut(s) 58, 73, 753
EaeI YGGCCR 1 cut(s) 609
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 319, 436, 812
Eco147I AGGCCT 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 944
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 667
EcoT14I CCWWGG 3 cut(s) 319, 436, 812
ErhI CCWWGG 3 cut(s) 319, 436, 812
FaeI CATG 5 cut(s) 74, 304, 440, 473, 1057
FaqI GGGAC 1 cut(s) 499
FatI CATG 5 cut(s) 70, 300, 436, 469, 1053
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 5 cut(s) 49, 527, 678, 695, 897
FokI GGATG 2 cut(s) 584, 834
Fsp4HI GCNGC 5 cut(s) 49, 527, 678, 695, 897
FspBI CTAG 7 cut(s) 776, 848, 863, 1005, 1071, 1119, 1161
GlaI GCGC 1 cut(s) 1159
GluI GCNGC 5 cut(s) 49, 527, 678, 695, 897
GsaI CCCAGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 1161
HaeIII GGCC 3 cut(s) 611, 943, 955
HapII CCGG 2 cut(s) 791, 840
HhaI GCGC 1 cut(s) 1160
Hin1II CATG 5 cut(s) 74, 304, 440, 473, 1057
Hin6I GCGC 1 cut(s) 1158
HinP1I GCGC 1 cut(s) 1158
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 8 cut(s) 328, 456, 634, 796, 1000, 1088, 1130, 1178
HpaII CCGG 2 cut(s) 791, 840
HphI GGTGA 2 cut(s) 172, 985
Hpy166II GTNNAC 4 cut(s) 22, 144, 538, 727
Hpy188I TCNGA 4 cut(s) 55, 162, 277, 383
Hpy188III TCNNGA 6 cut(s) 38, 71, 198, 470, 791, 800
Hpy8I GTNNAC 4 cut(s) 22, 144, 538, 727
HpyAV CCTTC 5 cut(s) 250, 762, 980, 1020, 1199
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 167, 511, 680, 697
HpyF3I CTNAG 2 cut(s) 380, 996
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 5 cut(s) 74, 304, 440, 473, 1057
HspAI GCGC 1 cut(s) 1158
Kpn2I TCCGGA 1 cut(s) 790
KpnI GGTACC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 58, 73, 753
Lsp1109I GCAGC 5 cut(s) 60, 538, 664, 681, 908
MaeI CTAG 7 cut(s) 776, 848, 863, 1005, 1071, 1119, 1161
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 1123
MalI GATC 3 cut(s) 60, 75, 755
MboI GATC 3 cut(s) 58, 73, 753
MboII GAAGA 6 cut(s) 302, 527, 777, 779, 838, 1069
MfeI CAATTG 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 9 cut(s) 103, 111, 227, 285, 296, 387, 474, 1014, 1023
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 2 cut(s) 628, 805
MmeI TCCRAC 1 cut(s) 963
Mox20I TGGCCA 1 cut(s) 611
MroI TCCGGA 1 cut(s) 790
MroXI GAANNNNTTC 2 cut(s) 465, 561
MscI TGGCCA 1 cut(s) 611
MseI TTAA 4 cut(s) 911, 959, 1017, 1169
MslI CAYNNNNRTG 1 cut(s) 717
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 899
MspI CCGG 2 cut(s) 791, 840
MspR9I CCNGG 1 cut(s) 669
MunI CAATTG 1 cut(s) 387
Mva1269I GAATGC 2 cut(s) 524, 744
MvaI CCWGG 1 cut(s) 669
NcoI CCATGG 1 cut(s) 436
NdeII GATC 3 cut(s) 58, 73, 753
NlaIII CATG 5 cut(s) 74, 304, 440, 473, 1057
NlaIV GGNNCC 3 cut(s) 241, 271, 773
NmuCI GTSAC 1 cut(s) 1123
NspV TTCGAA 1 cut(s) 459
OliI CACNNNNGTG 1 cut(s) 717
PagI TCATGA 2 cut(s) 70, 469
PceI AGGCCT 1 cut(s) 955
PctI GAATGC 2 cut(s) 524, 744
PdmI GAANNNNTTC 2 cut(s) 465, 561
PfeI GAWTC 6 cut(s) 328, 456, 1000, 1088, 1130, 1178
PkrI GCNGC 5 cut(s) 50, 528, 679, 696, 898
PleI GAGTC 2 cut(s) 628, 804
PpsI GAGTC 2 cut(s) 628, 804
PpuMI RGGWCCY 1 cut(s) 259
PsiI TTATAA 1 cut(s) 219
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 667
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 3 cut(s) 241, 271, 773
PspPI GGNCC 2 cut(s) 259, 942
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 699
RsaI GTAC 2 cut(s) 271, 728
RsaNI GTAC 2 cut(s) 270, 727
RseI CAYNNNNRTG 1 cut(s) 717
SaqAI TTAA 4 cut(s) 911, 959, 1017, 1169
SatI GCNGC 5 cut(s) 49, 527, 678, 695, 897
Sau3AI GATC 3 cut(s) 58, 73, 753
Sau96I GGNCC 2 cut(s) 259, 942
SchI GAGTC 2 cut(s) 628, 805
ScrFI CCNGG 1 cut(s) 669
SfcI CTRYAG 1 cut(s) 695
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 717
SpeI ACTAGT 2 cut(s) 1070, 1118
Sse9I AATT 9 cut(s) 103, 111, 227, 285, 296, 387, 474, 1014, 1023
SseBI AGGCCT 1 cut(s) 955
SsiI CCGC 3 cut(s) 305, 479, 899
SspI AATATT 1 cut(s) 562
SspMI CTAG 7 cut(s) 776, 848, 863, 1005, 1071, 1119, 1161
StuI AGGCCT 1 cut(s) 955
StyD4I CCNGG 1 cut(s) 667
StyI CCWWGG 3 cut(s) 319, 436, 812
TaiI ACGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 86, 459, 799, 1080
TasI AATT 9 cut(s) 103, 111, 227, 285, 296, 387, 474, 1014, 1023
TatI WGTACW 1 cut(s) 726
TfiI GAWTC 6 cut(s) 328, 456, 1000, 1088, 1130, 1178
Tru1I TTAA 4 cut(s) 911, 959, 1017, 1169
Tru9I TTAA 4 cut(s) 911, 959, 1017, 1169
TscAI CASTG 2 cut(s) 258, 704
TseFI GTSAC 1 cut(s) 1123
TseI GCWGC 5 cut(s) 48, 526, 677, 694, 896
Tsp45I GTSAC 1 cut(s) 1123
TspDTI ATGAA 4 cut(s) 289, 320, 458, 486
TspGWI ACGGA 3 cut(s) 1100, 1142, 1190
TspRI CASTG 2 cut(s) 258, 704
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 2 cut(s) 465, 561
XspI CTAG 7 cut(s) 776, 848, 863, 1005, 1071, 1119, 1161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.