RchiOBHm_Chr4g0401361
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19558937 .. 19560811
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37329

Sequence Viewer

Length: 1263 bp
ATGTCGAGTGGAGTTGTGACTGTTGTAGCATTAGTAGTTGTCTGTGTGATGATTGCTATCATAGTTGTATACAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTCTCTCATGATCCAATCTTTTCGACACCCACAATGGACAATTTTCTAATTGATATAGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTACAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACCTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTGCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCGGTTGGGACAGCTAAAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGAGAACTTTTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCAGTGTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACGTAGACGACAATCTTCCGGAGAGTCGAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCCGGAGAACTAGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAACATAGAGAGGCAGCGGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGGCCTTTAATGAGTGCTGTGGTGAAAATGTTGGAAGGAGGAACTGAGATTCCTAGACCTTCAACTAACCCAGTTCAGCACTCGTTGTCAGGCACTCCTGTCATGGCATCGTATAGCACTAGTGTCTTCGACACGGATTCCTCTCATACCACAAGTGGTGTTGGCACTAGTGTCACGGATTCCTCTCATACAACAAGTGGTGTTGGCACTAGTGTCTTCGACATGGATTCCTCTCATACAACAATAGGTGTTGAAGGATGTTGA

Protein Analysis

420

Amino Acids

46.82

Weight (kDa)

6.11

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 76 - 344 7.4e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 78 - 276 1e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccI GTMKAC 2 cut(s) 69, 825
AccIII TCCGGA 1 cut(s) 838
AciI CCGC 3 cut(s) 353, 527, 947
AclWI GGATC 2 cut(s) 101, 116
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 3 cut(s) 259, 319, 776
AfiI CCNNNNNNNGG 3 cut(s) 372, 866, 999
AgsI TTSAA 5 cut(s) 338, 670, 884, 1062, 1253
AhlI ACTAGT 3 cut(s) 1118, 1166, 1208
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 513, 545
AleI CACNNNNGTG 1 cut(s) 765
AloI GAACNNNNNNTCC 2 cut(s) 1033, 1065
AluBI AGCT 8 cut(s) 99, 514, 539, 644, 664, 780, 904, 968
AluI AGCT 8 cut(s) 99, 514, 539, 644, 664, 780, 904, 968
Alw26I GTCTC 3 cut(s) 118, 415, 843
AlwI GGATC 2 cut(s) 101, 116
Ama87I CYCGRG 1 cut(s) 992
Aor13HI TCCGGA 1 cut(s) 838
AoxI GGCC 3 cut(s) 657, 989, 1001
ApeKI GCWGC 5 cut(s) 96, 574, 725, 742, 944
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 2 cut(s) 513, 609
Asp718I GGTACC 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 307, 990
AsuHPI GGTGA 2 cut(s) 220, 1033
AsuII TTCGAA 1 cut(s) 507
AvaI CYCGRG 1 cut(s) 992
AvaII GGWCC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 317
BbsI GAAGAC 2 cut(s) 1117, 1207
BbvI GCAGC 5 cut(s) 108, 586, 712, 729, 956
BccI CCATC 2 cut(s) 191, 864
BciT130I CCWGG 1 cut(s) 717
BcoDI GTCTC 3 cut(s) 118, 415, 843
BcuI ACTAGT 3 cut(s) 1118, 1166, 1208
BfaI CTAG 6 cut(s) 896, 911, 1053, 1119, 1167, 1209
BfmI CTRYAG 1 cut(s) 743
BisI GCNGC 5 cut(s) 97, 575, 726, 743, 945
BlsI GCNGC 5 cut(s) 98, 576, 727, 744, 946
Bme1390I CCNGG 1 cut(s) 717
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 992
BmgT120I GGNCC 2 cut(s) 307, 990
BmiI GGNNCC 2 cut(s) 289, 319
BmrFI CCNGG 1 cut(s) 717
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 1 cut(s) 1115
BmuI ACTGGG 1 cut(s) 1064
BpiI GAAGAC 2 cut(s) 1117, 1207
BplI GAGNNNNNCTC 2 cut(s) 697, 729
Bpu14I TTCGAA 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 321, 367, 484, 860
BsaWI WCCGGW 1 cut(s) 838
BsaXI ACNNNNNCTCC 2 cut(s) 941, 971
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 866, 999
Bse1I ACTGG 3 cut(s) 110, 857, 1070
Bse8I GATNNNNATC 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 838
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 4 cut(s) 321, 367, 484, 860
BseGI GGATG 3 cut(s) 625, 875, 1262
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 3 cut(s) 372, 866, 999
BseMII CTCAG 2 cut(s) 442, 1035
BseNI ACTGG 3 cut(s) 110, 857, 1070
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 5 cut(s) 108, 586, 712, 729, 956
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 711
BshFI GGCC 3 cut(s) 659, 991, 1003
BshNI GGYRCC 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 992
BsiSI CCGG 2 cut(s) 839, 888
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 3 cut(s) 372, 866, 999
BsmAI GTCTC 3 cut(s) 118, 415, 843
BsmFI GGGAC 1 cut(s) 547
BsmI GAATGC 2 cut(s) 572, 792
BsnI GGCC 3 cut(s) 659, 991, 1003
BsoBI CYCGRG 1 cut(s) 992
Bsp119I TTCGAA 1 cut(s) 507
Bsp13I TCCGGA 1 cut(s) 838
Bsp1407I TGTACA 1 cut(s) 774
Bsp143I GATC 3 cut(s) 106, 121, 801
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 3 cut(s) 353, 527, 947
BspANI GGCC 3 cut(s) 659, 991, 1003
BspCNI CTCAG 2 cut(s) 441, 1036
BspEI TCCGGA 1 cut(s) 838
BspHI TCATGA 2 cut(s) 118, 517
BspLI GGNNCC 2 cut(s) 289, 319
BspMAI CTGCAG 1 cut(s) 747
BspPI GGATC 2 cut(s) 101, 116
BspT104I TTCGAA 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 774
BsrI ACTGG 3 cut(s) 110, 857, 1070
BssECI CCNNGG 4 cut(s) 321, 367, 484, 860
BssMI GATC 3 cut(s) 106, 121, 801
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 3 cut(s) 367, 484, 860
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 2 cut(s) 22, 262
BstAUI TGTACA 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 572
BstDEI CTNAG 2 cut(s) 428, 1044
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 3 cut(s) 625, 875, 1262
BstKTI GATC 3 cut(s) 109, 124, 804
BstMAI GTCTC 3 cut(s) 118, 415, 843
BstMBI GATC 3 cut(s) 106, 121, 801
BstNI CCWGG 1 cut(s) 717
BstSCI CCNGG 1 cut(s) 715
BstSFI CTRYAG 1 cut(s) 743
BstV1I GCAGC 5 cut(s) 108, 586, 712, 729, 956
BstV2I GAAGAC 2 cut(s) 1117, 1207
BstXI CCANNNNNNTGG 2 cut(s) 238, 738
BstZ17I GTATAC 1 cut(s) 70
BsuRI GGCC 3 cut(s) 659, 991, 1003
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 3 cut(s) 625, 875, 1262
BtsI GCAGTG 2 cut(s) 306, 752
BtsIMutI CAGTG 2 cut(s) 306, 752
Cac8I GCNNGC 1 cut(s) 572
CciI TCATGA 2 cut(s) 118, 517
Cfr13I GGNCC 2 cut(s) 307, 990
Csp6I GTAC 3 cut(s) 258, 318, 775
CviAII CATG 6 cut(s) 119, 349, 485, 518, 1102, 1222
CviQI GTAC 3 cut(s) 258, 318, 775
DdeI CTNAG 2 cut(s) 428, 1044
DpnI GATC 3 cut(s) 108, 123, 803
DpnII GATC 3 cut(s) 106, 121, 801
EaeI YGGCCR 1 cut(s) 657
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 3 cut(s) 367, 484, 860
Eco147I AGGCCT 1 cut(s) 1003
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 992
EcoO109I RGGNCCY 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 715
EcoT14I CCWWGG 3 cut(s) 367, 484, 860
ErhI CCWWGG 3 cut(s) 367, 484, 860
FaeI CATG 6 cut(s) 122, 352, 488, 521, 1105, 1225
FaqI GGGAC 1 cut(s) 547
FatI CATG 6 cut(s) 118, 348, 484, 517, 1101, 1221
FblI GTMKAC 2 cut(s) 69, 825
Fnu4HI GCNGC 5 cut(s) 97, 575, 726, 743, 945
FokI GGATG 2 cut(s) 632, 882
Fsp4HI GCNGC 5 cut(s) 97, 575, 726, 743, 945
FspBI CTAG 6 cut(s) 896, 911, 1053, 1119, 1167, 1209
GluI GCNGC 5 cut(s) 97, 575, 726, 743, 945
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 3 cut(s) 659, 991, 1003
HapII CCGG 2 cut(s) 839, 888
Hin1II CATG 6 cut(s) 122, 352, 488, 521, 1105, 1225
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 8 cut(s) 376, 504, 682, 844, 1048, 1136, 1178, 1226
HpaII CCGG 2 cut(s) 839, 888
HphI GGTGA 2 cut(s) 220, 1033
Hpy166II GTNNAC 5 cut(s) 70, 192, 586, 775, 826
Hpy188I TCNGA 4 cut(s) 103, 210, 325, 431
Hpy188III TCNNGA 6 cut(s) 86, 119, 246, 518, 839, 848
Hpy8I GTNNAC 5 cut(s) 70, 192, 586, 775, 826
HpyAV CCTTC 5 cut(s) 298, 810, 1028, 1068, 1247
HpyCH4III ACNGT 2 cut(s) 22, 262
HpyCH4IV ACGT 2 cut(s) 91, 822
HpyCH4V TGCA 4 cut(s) 215, 559, 728, 745
HpyF3I CTNAG 2 cut(s) 428, 1044
HpySE526I ACGT 2 cut(s) 91, 822
Hsp92II CATG 6 cut(s) 122, 352, 488, 521, 1105, 1225
Kpn2I TCCGGA 1 cut(s) 838
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 3 cut(s) 106, 121, 801
Lsp1109I GCAGC 5 cut(s) 108, 586, 712, 729, 956
LweI GCATC 1 cut(s) 1115
MaeI CTAG 6 cut(s) 896, 911, 1053, 1119, 1167, 1209
MaeII ACGT 2 cut(s) 91, 822
MaeIII GTNAC 2 cut(s) 16, 1171
MalI GATC 3 cut(s) 108, 123, 803
MboI GATC 3 cut(s) 106, 121, 801
MboII GAAGA 7 cut(s) 350, 575, 825, 827, 886, 1117, 1207
MfeI CAATTG 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 7 cut(s) 151, 159, 275, 333, 344, 435, 522
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 2 cut(s) 676, 853
MmeI TCCRAC 1 cut(s) 1011
Mox20I TGGCCA 1 cut(s) 659
MroI TCCGGA 1 cut(s) 838
MroXI GAANNNNTTC 2 cut(s) 513, 609
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 959, 1007
MslI CAYNNNNRTG 1 cut(s) 765
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 839, 888
MspR9I CCNGG 1 cut(s) 717
MunI CAATTG 1 cut(s) 435
Mva1269I GAATGC 2 cut(s) 572, 792
MvaI CCWGG 1 cut(s) 717
NcoI CCATGG 1 cut(s) 484
NdeII GATC 3 cut(s) 106, 121, 801
NlaIII CATG 6 cut(s) 122, 352, 488, 521, 1105, 1225
NlaIV GGNNCC 2 cut(s) 289, 319
NmuCI GTSAC 2 cut(s) 16, 1171
NspV TTCGAA 1 cut(s) 507
OliI CACNNNNGTG 1 cut(s) 765
PagI TCATGA 2 cut(s) 118, 517
PceI AGGCCT 1 cut(s) 1003
PctI GAATGC 2 cut(s) 572, 792
PdmI GAANNNNTTC 2 cut(s) 513, 609
PfeI GAWTC 6 cut(s) 376, 504, 1048, 1136, 1178, 1226
PkrI GCNGC 5 cut(s) 98, 576, 727, 744, 946
PleI GAGTC 2 cut(s) 676, 852
PpsI GAGTC 2 cut(s) 676, 852
PpuMI RGGWCCY 1 cut(s) 307
PsiI TTATAA 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 2 cut(s) 289, 319
PspPI GGNCC 2 cut(s) 307, 990
PspPPI RGGWCCY 1 cut(s) 307
PstI CTGCAG 1 cut(s) 747
RsaI GTAC 3 cut(s) 259, 319, 776
RsaNI GTAC 3 cut(s) 258, 318, 775
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 2 cut(s) 959, 1007
SatI GCNGC 5 cut(s) 97, 575, 726, 743, 945
Sau3AI GATC 3 cut(s) 106, 121, 801
Sau96I GGNCC 2 cut(s) 307, 990
SchI GAGTC 2 cut(s) 676, 853
ScrFI CCNGG 1 cut(s) 717
SfaNI GCATC 1 cut(s) 1115
SfcI CTRYAG 1 cut(s) 743
SfuI TTCGAA 1 cut(s) 507
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 765
SpeI ACTAGT 3 cut(s) 1118, 1166, 1208
Sse9I AATT 7 cut(s) 151, 159, 275, 333, 344, 435, 522
SseBI AGGCCT 1 cut(s) 1003
SsiI CCGC 3 cut(s) 353, 527, 947
SspI AATATT 1 cut(s) 610
SspMI CTAG 6 cut(s) 896, 911, 1053, 1119, 1167, 1209
StuI AGGCCT 1 cut(s) 1003
StyD4I CCNGG 1 cut(s) 715
StyI CCWWGG 3 cut(s) 367, 484, 860
TaaI ACNGT 2 cut(s) 22, 262
TaiI ACGT 2 cut(s) 94, 825
TaqI TCGA 6 cut(s) 5, 134, 507, 847, 1128, 1218
TasI AATT 7 cut(s) 151, 159, 275, 333, 344, 435, 522
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 6 cut(s) 376, 504, 1048, 1136, 1178, 1226
Tru1I TTAA 2 cut(s) 959, 1007
Tru9I TTAA 2 cut(s) 959, 1007
TscAI CASTG 2 cut(s) 306, 752
TseFI GTSAC 2 cut(s) 16, 1171
TseI GCWGC 5 cut(s) 96, 574, 725, 742, 944
Tsp45I GTSAC 2 cut(s) 16, 1171
TspDTI ATGAA 4 cut(s) 337, 368, 506, 534
TspGWI ACGGA 2 cut(s) 1148, 1190
TspRI CASTG 2 cut(s) 306, 752
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 867
XmiI GTMKAC 2 cut(s) 69, 825
XmnI GAANNNNTTC 2 cut(s) 513, 609
XspI CTAG 6 cut(s) 896, 911, 1053, 1119, 1167, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.