RchiOBHm_Chr4g0401381
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19572859 .. 19573611
753 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37330

Sequence Viewer

Length: 675 bp
ATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCAAAAAGTCTCATGAAATTGCAGTTGGGACAACTAAAAGGATTGCTTACTTGCACGAAGAATGCCAGCAGCAAATAGTCCACTATGATATAAAACCTGAAAAGATTGTTTTGGATGAGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAACAGAGATAAGACTCATATATCAATGACAGGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACCTAGACGACAATCTTCCAGAGAGTCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGCAGAACTAGGAGAGCTAGTGCTAGTTTGTGGCATAGACGAGAAAGACAAAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGGCCTTTAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGAAATTGAGATTCCTAGACCTTCAATTAACCCAATTCAGTACTCGTTCCCAGGCACTCTTGTCATGGTATCGTATAGTACTAGTATCTTCGACACGGATACCTCTCAAACAGCAACTCGTGTCATGAATTCCTCTCAAACAACAACTAGTGTTGAAGGACATTGA

Protein Analysis

224

Amino Acids

25.55

Weight (kDa)

6.09

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 78 8.4e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 1 - 79 1e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 637
AfaI GTAC 2 cut(s) 551, 589
AfiI CCNNNNNNNGG 2 cut(s) 338, 471
AgsI TTSAA 5 cut(s) 58, 220, 356, 534, 665
AhlI ACTAGT 2 cut(s) 590, 656
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 5 cut(s) 194, 214, 359, 376, 440
AluI AGCT 5 cut(s) 194, 214, 359, 376, 440
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 3 cut(s) 207, 461, 473
ApeKI GCWGC 3 cut(s) 124, 359, 416
ApoI RAATTY 1 cut(s) 637
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 464
BalI TGGCCA 1 cut(s) 209
BauI CACGAG 1 cut(s) 627
BbvI GCAGC 3 cut(s) 136, 346, 428
BccI CCATC 1 cut(s) 336
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 2 cut(s) 590, 656
BfaI CTAG 7 cut(s) 296, 368, 377, 383, 525, 591, 657
BfmI CTRYAG 1 cut(s) 360
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 3 cut(s) 125, 360, 417
BlsI GCNGC 3 cut(s) 126, 361, 418
BmcAI AGTACT 2 cut(s) 551, 589
Bme1390I CCNGG 1 cut(s) 561
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 561
BsaJI CCNNGG 3 cut(s) 34, 332, 559
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 471
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 34, 332, 559
BseGI GGATG 2 cut(s) 175, 347
BseLI CCNNNNNNNGG 2 cut(s) 338, 471
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 3 cut(s) 136, 346, 428
BshFI GGCC 3 cut(s) 209, 463, 475
BsiHKCI CYCGRG 1 cut(s) 464
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 338, 471
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 97
BsmI GAATGC 2 cut(s) 122, 264
BsnI GGCC 3 cut(s) 209, 463, 475
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 34
BspANI GGCC 3 cut(s) 209, 463, 475
BspHI TCATGA 2 cut(s) 67, 633
BspLI GGNNCC 1 cut(s) 293
BspMAI CTGCAG 1 cut(s) 364
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 34, 332, 559
BssMI GATC 1 cut(s) 273
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 2 cut(s) 34, 332
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 2 cut(s) 175, 347
BstKTI GATC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 559
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 3 cut(s) 136, 346, 428
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 209, 463, 475
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 2 cut(s) 175, 347
Cac8I GCNNGC 1 cut(s) 122
CciI TCATGA 2 cut(s) 67, 633
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 550, 588
CviAII CATG 4 cut(s) 35, 68, 574, 634
CviJI RGCY 9 cut(s) 194, 209, 214, 252, 359, 376, 440, 463, 475
CviKI_1 RGCY 9 cut(s) 194, 209, 214, 252, 359, 376, 440, 463, 475
CviQI GTAC 2 cut(s) 550, 588
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 34, 332
Eco147I AGGCCT 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 637
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 34, 332
ErhI CCWWGG 2 cut(s) 34, 332
FaeI CATG 4 cut(s) 38, 71, 577, 637
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 97
FatI CATG 4 cut(s) 34, 67, 573, 633
Fnu4HI GCNGC 3 cut(s) 125, 360, 417
FokI GGATG 2 cut(s) 182, 354
Fsp4HI GCNGC 3 cut(s) 125, 360, 417
FspBI CTAG 7 cut(s) 296, 368, 377, 383, 525, 591, 657
GluI GCNGC 3 cut(s) 125, 360, 417
HaeIII GGCC 3 cut(s) 209, 463, 475
Hin1II CATG 4 cut(s) 38, 71, 577, 637
HinfI GANTC 4 cut(s) 54, 232, 316, 520
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 68, 311, 320, 634
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 4 cut(s) 282, 500, 540, 659
HpyCH4V TGCA 3 cut(s) 77, 109, 362
Hsp92II CATG 4 cut(s) 38, 71, 577, 637
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 134, 165, 234, 310, 324, 546, 573
Lsp1109I GCAGC 3 cut(s) 136, 346, 428
MaeI CTAG 7 cut(s) 296, 368, 377, 383, 525, 591, 657
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 5 cut(s) 125, 297, 299, 358, 589
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 5 cut(s) 72, 513, 534, 543, 637
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 2 cut(s) 226, 325
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 4 cut(s) 406, 465, 622, 652
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 431, 479, 537
Msp20I TGGCCA 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 122, 264
MvaI CCWGG 1 cut(s) 561
NcoI CCATGG 1 cut(s) 34
NdeII GATC 1 cut(s) 273
NlaIII CATG 4 cut(s) 38, 71, 577, 637
NlaIV GGNNCC 1 cut(s) 293
PagI TCATGA 2 cut(s) 67, 633
PceI AGGCCT 1 cut(s) 475
PctI GAATGC 2 cut(s) 122, 264
PfeI GAWTC 2 cut(s) 54, 520
PkrI GCNGC 3 cut(s) 126, 361, 418
PleI GAGTC 2 cut(s) 226, 324
PpsI GAGTC 2 cut(s) 226, 324
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 462
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 2 cut(s) 551, 589
RsaNI GTAC 2 cut(s) 550, 588
SaqAI TTAA 3 cut(s) 431, 479, 537
SatI GCNGC 3 cut(s) 125, 360, 417
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 2 cut(s) 551, 589
SchI GAGTC 2 cut(s) 226, 325
ScrFI CCNGG 1 cut(s) 561
SfcI CTRYAG 1 cut(s) 360
SpeI ACTAGT 2 cut(s) 590, 656
Sse9I AATT 5 cut(s) 72, 513, 534, 543, 637
SseBI AGGCCT 1 cut(s) 475
SspMI CTAG 7 cut(s) 296, 368, 377, 383, 525, 591, 657
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 559
StyI CCWWGG 2 cut(s) 34, 332
TaqI TCGA 1 cut(s) 600
TasI AATT 5 cut(s) 72, 513, 534, 543, 637
TatI WGTACW 2 cut(s) 549, 587
TfiI GAWTC 2 cut(s) 54, 520
Tru1I TTAA 3 cut(s) 431, 479, 537
Tru9I TTAA 3 cut(s) 431, 479, 537
TseI GCWGC 3 cut(s) 124, 359, 416
TspDTI ATGAA 2 cut(s) 84, 650
TspGWI ACGGA 1 cut(s) 620
XapI RAATTY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 339
XspI CTAG 7 cut(s) 296, 368, 377, 383, 525, 591, 657
ZrmI AGTACT 2 cut(s) 551, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.