Rw4G008630
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
18965131 .. 18981165
16035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008630.1

Sequence Viewer

Length: 1320 bp
ATGTTGAGTTACCCGAGTGCACAGTCAAACATCGGACTAATAGCCATTCTTGTAGGAGTTGGTGTGTTTTCTTTTTCTTATTTTTCTGCCTTCGTTTTCATTGTTTTGTTACATTTTGCAGTGTCTGTGATGACTGCTATCTTAGGTGCAGCATGGCGGAAAAGTAATCAGAAAGGTAGCAGCTCTGATGATCCAATCTACACTCATACAAAAAACAAACAAAAAAGCTTTCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAAGTTTACTTCTCAACAAATTCGGATTGCAACTGATAACTTCACCAACTTGTTAGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTCTATTTAGTAATGGAACGCTTGCGGCAGTGAAGGTTCTAAGAGGTACCTCGGACAAGAGAATTGATGAGCAATTCATGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGAGAGCTTAGAGCACTGGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCCACGGAAACAGGATGGTAAGATTTGAAAAGCTTCATGACATTGCGGTTGGAACGGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAACGAATAGTCCACTATGATATAAAACCTGAAAATATTCTTTTGGATGTGAATTTCCTCCCCAAAGTTGCTGACTTCGGTTTGGCCAAGCTTATCAACAGGGACAATACTCATATAACAATGACAGGTTGGAGGGGAACTCCTGGTTATGCTGCACCAGAACTTTGGCTGCGGTTTCCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGATGTTATTTGAGATCATAGGTAGAAGAAGGAACCATGACCTTAATCTTCCAGAGAGCCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGAGAACTAATGGCAGTGTGTTGTATAGAGGAAAAAGATAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTATAGGTCCGAGTTGAGGCCCTTAATGAGTGTTGTGTTGAAAATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACAATCCTATCATGGCAGCATATAGCACTAGTGCCTTCGACACGGATTCCTCTCAAACAATAACTGGATGTAACATTGTTTGTGAGACTCCCATCATGAAAAAATTCGAGATTGAAATAGCGTCTACTTAA

Protein Analysis

439

Amino Acids

49.92

Weight (kDa)

7.2

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 109 - 375 1.5e-44 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 111 - 304 3e-42 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 1313
AciI CCGC 5 cut(s) 157, 395, 452, 626, 844
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 756
AcsI RAATTY 4 cut(s) 303, 724, 1139, 1292
AfaI GTAC 3 cut(s) 418, 463, 875
AfiI CCNNNNNNNGG 2 cut(s) 965, 1098
AgsI TTSAA 5 cut(s) 608, 983, 1123, 1161, 1304
AhlI ACTAGT 1 cut(s) 1217
AjnI CCWGG 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 939, 971
AleI CACNNNNGTG 1 cut(s) 864
AluBI AGCT 8 cut(s) 183, 228, 526, 613, 763, 879, 986, 1067
AluI AGCT 8 cut(s) 183, 228, 526, 613, 763, 879, 986, 1067
Alw21I GWGCWC 2 cut(s) 22, 535
Alw26I GTCTC 2 cut(s) 503, 1268
Alw44I GTGCAC 1 cut(s) 18
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 2 cut(s) 756, 1100
ApaLI GTGCAC 1 cut(s) 18
ApeKI GCWGC 6 cut(s) 149, 180, 824, 841, 1043, 1205
ApoI RAATTY 4 cut(s) 303, 724, 1139, 1292
AseI ATTAAT 1 cut(s) 1164
Asp700I GAANNNNTTC 3 cut(s) 612, 708, 1292
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 2 cut(s) 1089, 1101
AsuHPI GGTGA 2 cut(s) 319, 1001
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 1089
BaeGI GKGCMC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 758
BanI GGYRCC 1 cut(s) 416
Bbv12I GWGCWC 2 cut(s) 22, 535
BbvI GCAGC 6 cut(s) 161, 192, 811, 828, 1055, 1217
BccI CCATC 4 cut(s) 290, 589, 963, 1289
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 1 cut(s) 816
BcoDI GTCTC 2 cut(s) 503, 1268
BcuI ACTAGT 1 cut(s) 1217
BfaI CTAG 4 cut(s) 639, 995, 1152, 1218
BisI GCNGC 7 cut(s) 150, 181, 396, 825, 842, 1044, 1206
BlsI GCNGC 7 cut(s) 151, 182, 397, 826, 843, 1045, 1207
Bme1390I CCNGG 1 cut(s) 816
Bme18I GGWCC 1 cut(s) 1089
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 1089, 1101
BmiI GGNNCC 2 cut(s) 418, 920
BmrFI CCNGG 1 cut(s) 816
BmsI GCATC 1 cut(s) 1173
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BsaJI CCNNGG 4 cut(s) 420, 502, 583, 959
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 965, 1098
Bse1I ACTGG 3 cut(s) 540, 956, 1258
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 4 cut(s) 420, 502, 583, 959
BseGI GGATG 4 cut(s) 600, 724, 974, 1262
BseLI CCNNNNNNNGG 2 cut(s) 965, 1098
BseMI GCAATG 1 cut(s) 621
BseNI ACTGG 3 cut(s) 540, 956, 1258
BseSI GKGCMC 1 cut(s) 22
BseXI GCAGC 6 cut(s) 161, 192, 811, 828, 1055, 1217
BsgI GTGCAG 2 cut(s) 168, 810
BshFI GGCC 2 cut(s) 758, 1102
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 2 cut(s) 22, 535
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 2 cut(s) 965, 1098
BsmAI GTCTC 2 cut(s) 503, 1268
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 1 cut(s) 671
BsnI GGCC 2 cut(s) 758, 1102
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 22, 535
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 2 cut(s) 190, 900
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 5 cut(s) 157, 395, 452, 626, 844
BspANI GGCC 2 cut(s) 758, 1102
BspHI TCATGA 2 cut(s) 616, 1284
BspLI GGNNCC 2 cut(s) 418, 920
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 621
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 3 cut(s) 540, 956, 1258
BssECI CCNNGG 4 cut(s) 420, 502, 583, 959
BssMI GATC 2 cut(s) 190, 900
BssT1I CCWWGG 2 cut(s) 502, 959
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 1 cut(s) 24
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstAUI TGTACA 1 cut(s) 873
BstC8I GCNNGC 2 cut(s) 393, 671
BstDEI CTNAG 3 cut(s) 142, 410, 527
BstDSI CCRYGG 2 cut(s) 502, 583
BstF5I GGATG 4 cut(s) 600, 724, 974, 1262
BstKTI GATC 2 cut(s) 193, 903
BstMAI GTCTC 2 cut(s) 503, 1268
BstMBI GATC 2 cut(s) 190, 900
BstMWI GCNNNNNNNGC 1 cut(s) 1183
BstNI CCWGG 1 cut(s) 816
BstSCI CCNGG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 22
BstV1I GCAGC 6 cut(s) 161, 192, 811, 828, 1055, 1217
BstXI CCANNNNNNTGG 1 cut(s) 837
BsuRI GGCC 2 cut(s) 758, 1102
BtgI CCRYGG 2 cut(s) 502, 583
BtsCI GGATG 4 cut(s) 600, 724, 974, 1262
BtsI GCAGTG 3 cut(s) 126, 405, 1017
BtsIMutI CAGTG 4 cut(s) 126, 405, 533, 1017
Cac8I GCNNGC 2 cut(s) 393, 671
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 2 cut(s) 616, 1284
Cfr13I GGNCC 2 cut(s) 1089, 1101
CseI GACGC 1 cut(s) 1299
Csp6I GTAC 3 cut(s) 417, 462, 874
CviAII CATG 8 cut(s) 153, 448, 482, 503, 617, 923, 1201, 1285
CviQI GTAC 3 cut(s) 417, 462, 874
DdeI CTNAG 3 cut(s) 142, 410, 527
DpnI GATC 2 cut(s) 192, 902
DpnII GATC 2 cut(s) 190, 900
EaeI YGGCCR 1 cut(s) 756
EciI GGCGGA 2 cut(s) 172, 467
Eco130I CCWWGG 2 cut(s) 502, 959
Eco47I GGWCC 1 cut(s) 1089
Eco88I CYCGRG 1 cut(s) 13
EcoO109I RGGNCCY 1 cut(s) 1101
EcoRII CCWGG 1 cut(s) 814
EcoT14I CCWWGG 2 cut(s) 502, 959
ErhI CCWWGG 2 cut(s) 502, 959
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 8 cut(s) 156, 451, 485, 506, 620, 926, 1204, 1288
FaqI GGGAC 1 cut(s) 788
FatI CATG 8 cut(s) 152, 447, 481, 502, 616, 922, 1200, 1284
FblI GTMKAC 1 cut(s) 1313
Fnu4HI GCNGC 7 cut(s) 150, 181, 396, 825, 842, 1044, 1206
FokI GGATG 4 cut(s) 607, 731, 981, 1269
Fsp4HI GCNGC 7 cut(s) 150, 181, 396, 825, 842, 1044, 1206
FspBI CTAG 4 cut(s) 639, 995, 1152, 1218
GluI GCNGC 7 cut(s) 150, 181, 396, 825, 842, 1044, 1206
HaeIII GGCC 2 cut(s) 758, 1102
HgaI GACGC 1 cut(s) 1299
Hin1II CATG 8 cut(s) 156, 451, 485, 506, 620, 926, 1204, 1288
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 3 cut(s) 226, 611, 761
HinfI GANTC 4 cut(s) 475, 1147, 1235, 1276
HphI GGTGA 2 cut(s) 319, 1001
Hpy166II GTNNAC 8 cut(s) 20, 291, 464, 487, 685, 874, 992, 1314
Hpy188I TCNGA 7 cut(s) 35, 171, 187, 234, 309, 424, 1093
Hpy188III TCNNGA 5 cut(s) 345, 617, 938, 1285, 1297
Hpy8I GTNNAC 8 cut(s) 20, 291, 464, 487, 685, 874, 992, 1314
HpyAV CCTTC 6 cut(s) 100, 397, 909, 1127, 1167, 1234
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4V TGCA 6 cut(s) 20, 119, 149, 314, 658, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 1183
HpyF3I CTNAG 3 cut(s) 142, 410, 527
Hsp92II CATG 8 cut(s) 156, 451, 485, 506, 620, 926, 1204, 1288
KpnI GGTACC 1 cut(s) 420
Kzo9I GATC 2 cut(s) 190, 900
Lsp1109I GCAGC 6 cut(s) 161, 192, 811, 828, 1055, 1217
LweI GCATC 1 cut(s) 1173
MaeI CTAG 4 cut(s) 639, 995, 1152, 1218
MaeIII GTNAC 3 cut(s) 8, 108, 1259
MalI GATC 2 cut(s) 192, 902
MboI GATC 2 cut(s) 190, 900
MboII GAAGA 4 cut(s) 674, 924, 926, 985
MhlI GDGCHC 2 cut(s) 22, 535
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 8 cut(s) 250, 303, 432, 443, 724, 1139, 1161, 1292
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 1 cut(s) 1270
MmeI TCCRAC 4 cut(s) 257, 610, 782, 1110
Mox20I TGGCCA 1 cut(s) 758
MroXI GAANNNNTTC 3 cut(s) 612, 708, 1292
MscI TGGCCA 1 cut(s) 758
MseI TTAA 5 cut(s) 930, 1058, 1106, 1164, 1318
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 816
Mva1269I GAATGC 1 cut(s) 671
MvaI CCWGG 1 cut(s) 816
MwoI GCNNNNNNNGC 1 cut(s) 1183
NcoI CCATGG 1 cut(s) 502
NdeII GATC 2 cut(s) 190, 900
NlaIII CATG 8 cut(s) 156, 451, 485, 506, 620, 926, 1204, 1288
NlaIV GGNNCC 2 cut(s) 418, 920
OliI CACNNNNGTG 1 cut(s) 864
PagI TCATGA 2 cut(s) 616, 1284
PctI GAATGC 1 cut(s) 671
PdmI GAANNNNTTC 3 cut(s) 612, 708, 1292
PfeI GAWTC 3 cut(s) 475, 1147, 1235
PkrI GCNGC 7 cut(s) 151, 182, 397, 826, 843, 1045, 1207
PleI GAGTC 1 cut(s) 1270
PpsI GAGTC 1 cut(s) 1270
PshBI ATTAAT 1 cut(s) 1164
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 814
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 2 cut(s) 418, 920
PspPI GGNCC 2 cut(s) 1089, 1101
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 3 cut(s) 418, 463, 875
RsaNI GTAC 3 cut(s) 417, 462, 874
RseI CAYNNNNRTG 1 cut(s) 864
SaqAI TTAA 5 cut(s) 930, 1058, 1106, 1164, 1318
SatI GCNGC 7 cut(s) 150, 181, 396, 825, 842, 1044, 1206
Sau3AI GATC 2 cut(s) 190, 900
Sau96I GGNCC 2 cut(s) 1089, 1101
SchI GAGTC 1 cut(s) 1270
ScrFI CCNGG 1 cut(s) 816
SduI GDGCHC 2 cut(s) 22, 535
SfaNI GCATC 1 cut(s) 1173
SinI GGWCC 1 cut(s) 1089
SmiMI CAYNNNNRTG 1 cut(s) 864
SpeI ACTAGT 1 cut(s) 1217
Sse9I AATT 8 cut(s) 250, 303, 432, 443, 724, 1139, 1161, 1292
SsiI CCGC 5 cut(s) 157, 395, 452, 626, 844
SspI AATATT 1 cut(s) 709
SspMI CTAG 4 cut(s) 639, 995, 1152, 1218
StyD4I CCNGG 1 cut(s) 814
StyI CCWWGG 2 cut(s) 502, 959
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 1227, 1296
TasI AATT 8 cut(s) 250, 303, 432, 443, 724, 1139, 1161, 1292
TatI WGTACW 2 cut(s) 461, 873
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 3 cut(s) 475, 1147, 1235
Tru1I TTAA 5 cut(s) 930, 1058, 1106, 1164, 1318
Tru9I TTAA 5 cut(s) 930, 1058, 1106, 1164, 1318
TscAI CASTG 4 cut(s) 126, 405, 540, 1017
TseI GCWGC 6 cut(s) 149, 180, 824, 841, 1043, 1205
TspDTI ATGAA 5 cut(s) 88, 436, 467, 605, 1301
TspGWI ACGGA 2 cut(s) 600, 1247
TspRI CASTG 4 cut(s) 126, 405, 540, 1017
VneI GTGCAC 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 1089
VspI ATTAAT 1 cut(s) 1164
XapI RAATTY 4 cut(s) 303, 724, 1139, 1292
XcmI CCANNNNNNNNNTGG 1 cut(s) 966
XmiI GTMKAC 1 cut(s) 1313
XmnI GAANNNNTTC 3 cut(s) 612, 708, 1292
XspI CTAG 4 cut(s) 639, 995, 1152, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.