Rmu_sc0006444.1_g000002
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006444.1
Physical Location & Seq
Forward (+)
30759 .. 31955
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006444.1_g000002.1.cds

Sequence Viewer

Length: 1197 bp
atgctaatattggttgcagaatgcaaaagaaggaatcagagtaggatctctgataacccaagttttctgactctcacaatgaacaaatttctgaatgatatggaaacagagaagcccatcagatttacttctcaacaacttcagattgcaactgataacttcaccaacttgctgggttcaggagggtttggttcagtttataaaggaaaatttagtaatggaacccttgtggcagtgaaggtcctaaatggtacctcggacaagggaattgaagaacaattcatggcggaagttagaacccttggcaggattcatcatatcaacttggttggtctttatggtttctgctttgagagacacctcagagcaattgtttatgagtatatgtcaaatggttcgcttgataagttgcttttccatggaaacaagaattttggattcgaaaagcttcatgaaattgcggttgggacagctaaagggattgcttacttgcacgaagaatgccagcagcgaatagtccactacgatataaaacctgaaaatattcttttggatgagaacttctttcctaaagtagctgattttggtttggccaagctgttcaacagagataagactcatatatcaatgacagggtggaggggaactcctggttatgctgcaccagaagtttggctgcagtgtcctataacccacaagtgtgatgtgtacagctttggaatgctattatttgagatcataggcagaagaaggaacctagacgacaatcttccggagagtcgagactggtttccaaggtggggatggaagaagtttgaagccggagaactaggagagctaatgctagtttgtggcatagaggagaaacatagagaggcagcggagagaatgttaaaggtagctatctgctgtgttcagtataggccggagttgaggcctttaatgagtgctgtggtgaaaatgttggaaggaggaactgagattcctagaccttcaattaacccacttcagcactcgttgtcaggcactcctgtcatggcatcgtatagcactagtgtcttcgacacggattcctcccatacaacaagtggtgttggcactagtgtcacggattcctctcatacaacaagtggtgttggcactagtgtcttcgacacggattcctctcatacaacaatcggtgttgaaggatgttga

Protein Analysis

398

Amino Acids

44.57

Weight (kDa)

6.4

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 772
AciI CCGC 3 cut(s) 287, 461, 881
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 3 cut(s) 86, 209, 430
AcuI CTGAAG 2 cut(s) 125, 992
AfaI GTAC 2 cut(s) 253, 710
AfiI CCNNNNNNNGG 2 cut(s) 306, 800
AgsI TTSAA 5 cut(s) 272, 604, 818, 996, 1187
AhlI ACTAGT 3 cut(s) 1052, 1100, 1142
AjnI CCWGG 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AleI CACNNNNGTG 1 cut(s) 699
AloI GAACNNNNNNTCC 2 cut(s) 967, 999
AluBI AGCT 7 cut(s) 448, 473, 578, 598, 714, 838, 902
AluI AGCT 7 cut(s) 448, 473, 578, 598, 714, 838, 902
Alw26I GTCTC 2 cut(s) 349, 777
AlwI GGATC 1 cut(s) 53
Aor13HI TCCGGA 1 cut(s) 772
AoxI GGCC 3 cut(s) 591, 923, 935
ApeKI GCWGC 4 cut(s) 508, 659, 676, 878
ApoI RAATTY 3 cut(s) 86, 209, 430
Asp700I GAANNNNTTC 2 cut(s) 447, 543
Asp718I GGTACC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 241
AsuHPI GGTGA 2 cut(s) 154, 967
AsuII TTCGAA 1 cut(s) 441
AvaII GGWCC 1 cut(s) 241
BalI TGGCCA 1 cut(s) 593
BanI GGYRCC 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 1051, 1141
BbvI GCAGC 4 cut(s) 520, 646, 663, 890
BccI CCATC 2 cut(s) 125, 798
BciT130I CCWGG 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 349, 777
BcuI ACTAGT 3 cut(s) 1052, 1100, 1142
BfaI CTAG 7 cut(s) 758, 830, 845, 987, 1053, 1101, 1143
BfmI CTRYAG 1 cut(s) 677
BisI GCNGC 4 cut(s) 509, 660, 677, 879
BlsI GCNGC 4 cut(s) 510, 661, 678, 880
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 3 cut(s) 223, 253, 755
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 1 cut(s) 1049
BpiI GAAGAC 2 cut(s) 1051, 1141
BplI GAGNNNNNCTC 2 cut(s) 631, 663
Bpu14I TTCGAA 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 255, 301, 418, 794
BsaWI WCCGGW 1 cut(s) 772
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 800
Bse1I ACTGG 1 cut(s) 791
BseAI TCCGGA 1 cut(s) 772
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 4 cut(s) 255, 301, 418, 794
BseGI GGATG 3 cut(s) 559, 809, 1196
BseLI CCNNNNNNNGG 2 cut(s) 306, 800
BseMII CTCAG 2 cut(s) 376, 969
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 4 cut(s) 520, 646, 663, 890
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 3 cut(s) 593, 925, 937
BshNI GGYRCC 1 cut(s) 251
BsiSI CCGG 3 cut(s) 773, 822, 926
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 306, 800
BsmAI GTCTC 2 cut(s) 349, 777
BsmFI GGGAC 1 cut(s) 481
BsmI GAATGC 3 cut(s) 26, 506, 726
BsnI GGCC 3 cut(s) 593, 925, 937
Bsp119I TTCGAA 1 cut(s) 441
Bsp13I TCCGGA 1 cut(s) 772
Bsp1407I TGTACA 1 cut(s) 708
Bsp143I GATC 2 cut(s) 45, 735
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 3 cut(s) 287, 461, 881
BspANI GGCC 3 cut(s) 593, 925, 937
BspCNI CTCAG 2 cut(s) 375, 970
BspEI TCCGGA 1 cut(s) 772
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 3 cut(s) 223, 253, 755
BspMAI CTGCAG 1 cut(s) 681
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 708
BsrI ACTGG 1 cut(s) 791
BssECI CCNNGG 4 cut(s) 255, 301, 418, 794
BssMI GATC 2 cut(s) 45, 735
BssT1I CCWWGG 3 cut(s) 301, 418, 794
Bst2UI CCWGG 1 cut(s) 651
BstAUI TGTACA 1 cut(s) 708
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 362, 978
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 3 cut(s) 559, 809, 1196
BstKTI GATC 2 cut(s) 48, 738
BstMAI GTCTC 2 cut(s) 349, 777
BstMBI GATC 2 cut(s) 45, 735
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstSFI CTRYAG 1 cut(s) 677
BstV1I GCAGC 4 cut(s) 520, 646, 663, 890
BstV2I GAAGAC 2 cut(s) 1051, 1141
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 2 cut(s) 172, 672
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 3 cut(s) 593, 925, 937
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 559, 809, 1196
BtsI GCAGTG 2 cut(s) 240, 686
BtsIMutI CAGTG 2 cut(s) 240, 686
Cac8I GCNNGC 1 cut(s) 506
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 252, 709
CviAII CATG 4 cut(s) 283, 419, 452, 1036
CviQI GTAC 2 cut(s) 252, 709
DdeI CTNAG 2 cut(s) 362, 978
DpnI GATC 2 cut(s) 47, 737
DpnII GATC 2 cut(s) 45, 735
EaeI YGGCCR 1 cut(s) 591
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 3 cut(s) 301, 418, 794
Eco147I AGGCCT 1 cut(s) 937
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 125, 992
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 301, 418, 794
ErhI CCWWGG 3 cut(s) 301, 418, 794
FaeI CATG 4 cut(s) 286, 422, 455, 1039
FaqI GGGAC 1 cut(s) 481
FatI CATG 4 cut(s) 282, 418, 451, 1035
Fnu4HI GCNGC 4 cut(s) 509, 660, 677, 879
FokI GGATG 2 cut(s) 566, 816
Fsp4HI GCNGC 4 cut(s) 509, 660, 677, 879
FspBI CTAG 7 cut(s) 758, 830, 845, 987, 1053, 1101, 1143
GluI GCNGC 4 cut(s) 509, 660, 677, 879
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 3 cut(s) 593, 925, 937
HapII CCGG 3 cut(s) 773, 822, 926
Hin1II CATG 4 cut(s) 286, 422, 455, 1039
HindIII AAGCTT 1 cut(s) 446
HpaII CCGG 3 cut(s) 773, 822, 926
HphI GGTGA 2 cut(s) 154, 967
Hpy166II GTNNAC 2 cut(s) 520, 709
Hpy188I TCNGA 8 cut(s) 39, 52, 69, 93, 122, 144, 259, 365
Hpy188III TCNNGA 4 cut(s) 180, 452, 773, 782
Hpy8I GTNNAC 2 cut(s) 520, 709
HpyAV CCTTC 6 cut(s) 24, 232, 744, 962, 1002, 1181
HpyCH4V TGCA 6 cut(s) 17, 24, 149, 493, 662, 679
HpyF3I CTNAG 2 cut(s) 362, 978
Hsp92II CATG 4 cut(s) 286, 422, 455, 1039
Kpn2I TCCGGA 1 cut(s) 772
KpnI GGTACC 1 cut(s) 255
Kzo9I GATC 2 cut(s) 45, 735
Lsp1109I GCAGC 4 cut(s) 520, 646, 663, 890
LweI GCATC 1 cut(s) 1049
MaeI CTAG 7 cut(s) 758, 830, 845, 987, 1053, 1101, 1143
MaeIII GTNAC 1 cut(s) 1105
MalI GATC 2 cut(s) 47, 737
MboI GATC 2 cut(s) 45, 735
MboII GAAGA 7 cut(s) 284, 509, 759, 761, 820, 1051, 1141
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 45
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 8 cut(s) 86, 209, 267, 278, 369, 430, 456, 996
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 3 cut(s) 64, 610, 787
MmeI TCCRAC 1 cut(s) 945
Mox20I TGGCCA 1 cut(s) 593
MroI TCCGGA 1 cut(s) 772
MroXI GAANNNNTTC 2 cut(s) 447, 543
MscI TGGCCA 1 cut(s) 593
MseI TTAA 3 cut(s) 893, 941, 999
MslI CAYNNNNRTG 1 cut(s) 699
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 3 cut(s) 773, 822, 926
MspR9I CCNGG 1 cut(s) 651
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 3 cut(s) 26, 506, 726
MvaI CCWGG 1 cut(s) 651
NcoI CCATGG 1 cut(s) 418
NdeII GATC 2 cut(s) 45, 735
NlaIII CATG 4 cut(s) 286, 422, 455, 1039
NlaIV GGNNCC 3 cut(s) 223, 253, 755
NmuCI GTSAC 1 cut(s) 1105
NspV TTCGAA 1 cut(s) 441
OliI CACNNNNGTG 1 cut(s) 699
PagI TCATGA 1 cut(s) 451
PceI AGGCCT 1 cut(s) 937
PctI GAATGC 3 cut(s) 26, 506, 726
PdmI GAANNNNTTC 2 cut(s) 447, 543
PfeI GAWTC 7 cut(s) 34, 310, 438, 982, 1070, 1112, 1160
PkrI GCNGC 4 cut(s) 510, 661, 678, 880
PleI GAGTC 3 cut(s) 64, 610, 786
PpsI GAGTC 3 cut(s) 64, 610, 786
PpuMI RGGWCCY 1 cut(s) 241
PsiI TTATAA 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 3 cut(s) 223, 253, 755
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 681
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 253, 710
RsaNI GTAC 2 cut(s) 252, 709
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 3 cut(s) 893, 941, 999
SatI GCNGC 4 cut(s) 509, 660, 677, 879
Sau3AI GATC 2 cut(s) 45, 735
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 3 cut(s) 64, 610, 787
ScrFI CCNGG 1 cut(s) 651
SfaNI GCATC 1 cut(s) 1049
SfcI CTRYAG 1 cut(s) 677
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 699
SpeI ACTAGT 3 cut(s) 1052, 1100, 1142
Sse9I AATT 8 cut(s) 86, 209, 267, 278, 369, 430, 456, 996
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 3 cut(s) 287, 461, 881
SspI AATATT 2 cut(s) 9, 544
SspMI CTAG 7 cut(s) 758, 830, 845, 987, 1053, 1101, 1143
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 3 cut(s) 301, 418, 794
TaqI TCGA 4 cut(s) 441, 781, 1062, 1152
TasI AATT 8 cut(s) 86, 209, 267, 278, 369, 430, 456, 996
TatI WGTACW 1 cut(s) 708
TfiI GAWTC 7 cut(s) 34, 310, 438, 982, 1070, 1112, 1160
Tru1I TTAA 3 cut(s) 893, 941, 999
Tru9I TTAA 3 cut(s) 893, 941, 999
TscAI CASTG 2 cut(s) 240, 686
TseFI GTSAC 1 cut(s) 1105
TseI GCWGC 4 cut(s) 508, 659, 676, 878
Tsp45I GTSAC 1 cut(s) 1105
TspDTI ATGAA 5 cut(s) 95, 271, 302, 440, 468
TspGWI ACGGA 3 cut(s) 1082, 1124, 1172
TspRI CASTG 2 cut(s) 240, 686
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 3 cut(s) 86, 209, 430
XcmI CCANNNNNNNNNTGG 2 cut(s) 801, 1085
XmnI GAANNNNTTC 2 cut(s) 447, 543
XspI CTAG 7 cut(s) 758, 830, 845, 987, 1053, 1101, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.