RchiOBHm_Chr4g0401211
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19215989 .. 19218754
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37316

Sequence Viewer

Length: 1104 bp
ATGTCGAGTTGCTCGAGTACACCGCCAAGCAGTGGACAATTACTTGCCATTTTTGTGGGATTCGTAGTCGTTTTTGTGAAGATCACATTATTGGTTGCAGTATGCAGGAAAAGGAATCAGAGTAGGATTTCTGATAAACCAAGTTTTCTCACTCTCACAATGGACAAATTTCTGAATGACATGGAAAGAGAGAAGCCCATCAGATTTACTTCTCAACAACTTCGGATTGCAACTGATAACTTCACCAACTTGCTGGGATCAGGAGGGTTTGGTGCAGTTTATAAAGGAATATTTAGTAATGGAACCCTTGTGGCAGTCAAGGTTCTAAATGGTACCTCTGACAAGAGAATTGAAGAACAATTCATGGCGGAGCACTTGATTGTAGGATTCGAAAAGCTTCATGACATTGCGGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGACATAAAGCCTGAAAATATTCTTTTGGATGTGAACTTCTTTCCTAAAGTAGCTGATTTTGGCTTGGCGAAGCTGTCCAACAGAGACAACAGTCATATAACAATGACAGGGGGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCGGTTTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGTATGCTATTATTTGAGATCATAGGTAGAAGAAGGAACCTAGACCTGAATCTTCCGGAGAGTCAAGACTGGTTTCCGAGGTGGGTATGGAAGAAGTTTGAAGCTGGACAACTGGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAAGATAAAGAGATAGCAGAGAGAATGGTAAAAGTAGCTATATGGTGTGTTCAGTATAGGCATGAGTTGAGGCCTTTGATGAGTGTGGTGGTGAAAATGCTCGAAGGAGCACTCGAAATTCCAAAACCTTCAATTAACCCATTTCAGCACTTGATGCCGGGCACTCCTATCATGGTAGCATATAGCACTAGTGCGTTCGACACTGATTCCTCTCAAACGATAACTGGATATAGGTTCTTGCGTGGTACTCCTATCATGAACAAATACGAGATTGAAATAGCATCCATCTAG

Protein Analysis

367

Amino Acids

41.45

Weight (kDa)

8.43

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 130 - 303 2.4e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 131 - 235 2e-23 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 721
AciI CCGC 4 cut(s) 23, 368, 410, 628
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 2 cut(s) 167, 930
AfaI GTAC 4 cut(s) 19, 334, 659, 1060
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 4 cut(s) 353, 767, 945, 1088
AhlI ACTAGT 1 cut(s) 1001
AjnI CCWGG 1 cut(s) 598
AleI CACNNNNGTG 1 cut(s) 648
AluBI AGCT 8 cut(s) 397, 422, 527, 547, 663, 770, 787, 851
AluI AGCT 8 cut(s) 397, 422, 527, 547, 663, 770, 787, 851
Alw21I GWGCWC 2 cut(s) 375, 925
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 1 cut(s) 884
ApeKI GCWGC 3 cut(s) 457, 608, 625
ApoI RAATTY 2 cut(s) 167, 930
Asp700I GAANNNNTTC 2 cut(s) 396, 492
Asp718I GGTACC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 972
AsuHPI GGTGA 2 cut(s) 235, 916
AsuII TTCGAA 1 cut(s) 390
AvaI CYCGRG 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 977
BanI GGYRCC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 375, 925
BbvI GCAGC 3 cut(s) 469, 595, 612
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 1 cut(s) 972
BcoDI GTCTC 1 cut(s) 552
BcuI ACTAGT 1 cut(s) 1001
BfaI CTAG 5 cut(s) 423, 707, 794, 1002, 1102
BisI GCNGC 3 cut(s) 458, 609, 626
BlsI GCNGC 3 cut(s) 459, 610, 627
Bme1390I CCNGG 2 cut(s) 600, 972
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 304, 334, 704
BmrFI CCNGG 2 cut(s) 600, 972
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 1 cut(s) 957
BmuI ACTGGG 1 cut(s) 788
BoxI GACNNNNGTC 1 cut(s) 564
BplI GAGNNNNNCTC 2 cut(s) 580, 612
Bpu14I TTCGAA 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 972
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 1 cut(s) 721
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 3 cut(s) 740, 783, 1042
Bse3DI GCAATG 1 cut(s) 405
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 1 cut(s) 743
BseGI GGATG 2 cut(s) 508, 1094
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 405
BseNI ACTGG 3 cut(s) 740, 783, 1042
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 1 cut(s) 977
BseXI GCAGC 3 cut(s) 469, 595, 612
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 2 cut(s) 294, 594
BshFI GGCC 1 cut(s) 886
BshNI GGYRCC 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 375, 925
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 722, 971
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 430
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 886
BsoBI CYCGRG 1 cut(s) 13
Bsp119I TTCGAA 1 cut(s) 390
Bsp1286I GDGCHC 3 cut(s) 375, 925, 977
Bsp13I TCCGGA 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 3 cut(s) 81, 257, 684
BspACI CCGC 4 cut(s) 23, 368, 410, 628
BspANI GGCC 1 cut(s) 886
BspEI TCCGGA 1 cut(s) 721
BspHI TCATGA 2 cut(s) 400, 1068
BspLI GGNNCC 3 cut(s) 304, 334, 704
BspPI GGATC 1 cut(s) 265
BspT104I TTCGAA 1 cut(s) 390
BspT107I GGYRCC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 405
BsrGI TGTACA 1 cut(s) 657
BsrI ACTGG 3 cut(s) 740, 783, 1042
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 3 cut(s) 81, 257, 684
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 967
BstAUI TGTACA 1 cut(s) 657
BstBI TTCGAA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 455
BstF5I GGATG 2 cut(s) 508, 1094
BstKTI GATC 3 cut(s) 84, 260, 687
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 3 cut(s) 81, 257, 684
BstMWI GCNNNNNNNGC 1 cut(s) 967
BstNI CCWGG 1 cut(s) 600
BstPAI GACNNNNGTC 1 cut(s) 564
BstSCI CCNGG 2 cut(s) 598, 970
BstSLI GKGCMC 1 cut(s) 977
BstV1I GCAGC 3 cut(s) 469, 595, 612
BstXI CCANNNNNNTGG 3 cut(s) 55, 253, 621
BsuRI GGCC 1 cut(s) 886
BtsCI GGATG 2 cut(s) 508, 1094
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 37, 1014
Cac8I GCNNGC 1 cut(s) 455
CciI TCATGA 2 cut(s) 400, 1068
Csp6I GTAC 4 cut(s) 18, 333, 658, 1059
CviAII CATG 6 cut(s) 181, 364, 401, 875, 985, 1069
CviQI GTAC 4 cut(s) 18, 333, 658, 1059
DpnI GATC 3 cut(s) 83, 259, 686
DpnII GATC 3 cut(s) 81, 257, 684
EciI GGCGGA 1 cut(s) 383
Eco147I AGGCCT 1 cut(s) 886
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 598
FaeI CATG 6 cut(s) 184, 367, 404, 878, 988, 1072
FaqI GGGAC 1 cut(s) 430
FatI CATG 6 cut(s) 180, 363, 400, 874, 984, 1068
Fnu4HI GCNGC 3 cut(s) 458, 609, 626
FokI GGATG 2 cut(s) 515, 1081
Fsp4HI GCNGC 3 cut(s) 458, 609, 626
FspBI CTAG 5 cut(s) 423, 707, 794, 1002, 1102
GluI GCNGC 3 cut(s) 458, 609, 626
GsaI CCCAGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 886
HapII CCGG 2 cut(s) 722, 971
Hin1II CATG 6 cut(s) 184, 367, 404, 878, 988, 1072
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 6 cut(s) 60, 115, 387, 715, 727, 1019
HpaII CCGG 2 cut(s) 722, 971
HphI GGTGA 2 cut(s) 235, 916
Hpy166II GTNNAC 5 cut(s) 20, 35, 469, 508, 658
Hpy188I TCNGA 7 cut(s) 120, 133, 174, 203, 225, 340, 744
Hpy188III TCNNGA 5 cut(s) 261, 401, 722, 731, 1069
Hpy8I GTNNAC 5 cut(s) 20, 35, 469, 508, 658
HpyAV CCTTC 3 cut(s) 693, 911, 951
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 6 cut(s) 98, 105, 230, 275, 442, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 967
Hsp92II CATG 6 cut(s) 184, 367, 404, 878, 988, 1072
Kpn2I TCCGGA 1 cut(s) 721
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 3 cut(s) 81, 257, 684
LmnI GCTCC 2 cut(s) 370, 920
Lsp1109I GCAGC 3 cut(s) 469, 595, 612
LweI GCATC 1 cut(s) 957
MaeI CTAG 5 cut(s) 423, 707, 794, 1002, 1102
MalI GATC 3 cut(s) 83, 259, 686
MboI GATC 3 cut(s) 81, 257, 684
MboII GAAGA 6 cut(s) 91, 365, 458, 708, 710, 769
MhlI GDGCHC 3 cut(s) 375, 925, 977
MluCI AATT 6 cut(s) 38, 167, 348, 359, 930, 945
MlyI GAGTC 1 cut(s) 736
MmeI TCCRAC 1 cut(s) 576
MnlI CCTC 8 cut(s) 257, 346, 419, 582, 738, 802, 876, 1033
MroI TCCGGA 1 cut(s) 721
MroXI GAANNNNTTC 2 cut(s) 396, 492
MseI TTAA 1 cut(s) 948
MslI CAYNNNNRTG 2 cut(s) 53, 648
MspI CCGG 2 cut(s) 722, 971
MspR9I CCNGG 2 cut(s) 600, 972
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 1 cut(s) 967
NciI CCSGG 1 cut(s) 972
NdeII GATC 3 cut(s) 81, 257, 684
NlaIII CATG 6 cut(s) 184, 367, 404, 878, 988, 1072
NlaIV GGNNCC 3 cut(s) 304, 334, 704
NspV TTCGAA 1 cut(s) 390
OliI CACNNNNGTG 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 13
PagI TCATGA 2 cut(s) 400, 1068
PceI AGGCCT 1 cut(s) 886
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 455
PdmI GAANNNNTTC 2 cut(s) 396, 492
PfeI GAWTC 5 cut(s) 60, 115, 387, 715, 1019
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 3 cut(s) 459, 610, 627
PleI GAGTC 1 cut(s) 735
PpsI GAGTC 1 cut(s) 735
PshAI GACNNNNGTC 1 cut(s) 564
PsiI TTATAA 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 304, 334, 704
PspXI VCTCGAGB 1 cut(s) 13
RsaI GTAC 4 cut(s) 19, 334, 659, 1060
RsaNI GTAC 4 cut(s) 18, 333, 658, 1059
RseI CAYNNNNRTG 2 cut(s) 53, 648
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 3 cut(s) 458, 609, 626
Sau3AI GATC 3 cut(s) 81, 257, 684
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 2 cut(s) 600, 972
SduI GDGCHC 3 cut(s) 375, 925, 977
SfaNI GCATC 1 cut(s) 957
Sfr274I CTCGAG 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 53, 648
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 1001
Sse9I AATT 6 cut(s) 38, 167, 348, 359, 930, 945
SseBI AGGCCT 1 cut(s) 886
SsiI CCGC 4 cut(s) 23, 368, 410, 628
SspI AATATT 2 cut(s) 291, 493
SspMI CTAG 5 cut(s) 423, 707, 794, 1002, 1102
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 2 cut(s) 598, 970
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 6 cut(s) 5, 14, 390, 915, 927, 1011
TasI AATT 6 cut(s) 38, 167, 348, 359, 930, 945
TatI WGTACW 2 cut(s) 17, 657
TfiI GAWTC 5 cut(s) 60, 115, 387, 715, 1019
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TscAI CASTG 2 cut(s) 37, 1021
TseI GCWGC 3 cut(s) 457, 608, 625
TspDTI ATGAA 3 cut(s) 352, 389, 1085
TspRI CASTG 2 cut(s) 37, 1021
Van91I CCANNNNNTGG 1 cut(s) 32
XapI RAATTY 2 cut(s) 167, 930
XhoI CTCGAG 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 396, 492
XspI CTAG 5 cut(s) 423, 707, 794, 1002, 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.