Rroxscaffold_2G00117770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000690
Physical Location & Seq
Forward (+)
48396068 .. 48397804
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117770.1

Sequence Viewer

Length: 396 bp
ATGGGTGTCCAAAGGAAAAGCACGGTGTCCGAGAGAAGAAGTCGGATTTTGGGAAATTTCCTCGTTGGACAAATGTCAAAAGAGAAAATTTGGGGGCATTGTGGGAGTAGTCAAATATTTCCGACATGTAGTTATGCCGATTATGCGGTCATGAATATGGTTATAAATGCAGACTTCATTGCGGCTATAAGTACGGTGGTAATTGCGGCGATAAGTATGGCGTTTACGGCGGCTTTAAGGGCAATGACGTGGTTGCTCATAGAGCATTTTAAAACTTGGGCACCAAGCTCAAAACAAGAGCTGGCAGTTTGGGATAATCTTCAGGTGATATTTCTAGTAGGAGCTAGCATAAGTTACTCTCGGTGTTATCTAACGGACAAAGCTAAGCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.6

Weight (kDa)

9.12

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 280
AciI CCGC 4 cut(s) 146, 182, 206, 230
AcsI RAATTY 2 cut(s) 55, 87
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 125
AjiI CACGTC 1 cut(s) 249
AluBI AGCT 5 cut(s) 288, 301, 344, 383, 388
AluI AGCT 5 cut(s) 288, 301, 344, 383, 388
ApoI RAATTY 2 cut(s) 55, 87
AsuHPI GGTGA 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 243
BfaI CTAG 3 cut(s) 335, 345, 389
BisI GCNGC 3 cut(s) 183, 207, 231
BlpI GCTNAGC 1 cut(s) 384
BlsI GCNGC 3 cut(s) 184, 208, 232
BmgBI CACGTC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 348
BoxI GACNNNNGTC 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 384
Bse3DI GCAATG 2 cut(s) 177, 249
BseMI GCAATG 2 cut(s) 177, 249
BseSI GKGCMC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 283
Bsp1720I GCTNAGC 1 cut(s) 384
BspACI CCGC 4 cut(s) 146, 182, 206, 230
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 282
BspOI GCTAGC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 280
BsrDI GCAATG 2 cut(s) 177, 249
Bst4CI ACNGT 2 cut(s) 25, 196
BstC8I GCNNGC 2 cut(s) 303, 346
BstDEI CTNAG 1 cut(s) 384
BstMWI GCNNNNNNNGC 4 cut(s) 143, 227, 239, 262
BstNSI RCATGY 1 cut(s) 129
BstPAI GACNNNNGTC 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 283
BtrI CACGTC 1 cut(s) 249
Cac8I GCNNGC 2 cut(s) 303, 346
CciI TCATGA 1 cut(s) 150
Csp6I GTAC 1 cut(s) 192
CviAII CATG 2 cut(s) 126, 151
CviJI RGCY 7 cut(s) 185, 233, 288, 301, 344, 383, 388
CviKI_1 RGCY 7 cut(s) 185, 233, 288, 301, 344, 383, 388
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 384
DraI TTTAAA 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 305
FaeI CATG 2 cut(s) 129, 154
FatI CATG 2 cut(s) 125, 150
Fnu4HI GCNGC 3 cut(s) 183, 207, 231
Fsp4HI GCNGC 3 cut(s) 183, 207, 231
FspBI CTAG 3 cut(s) 335, 345, 389
GluI GCNGC 3 cut(s) 183, 207, 231
Hin1II CATG 2 cut(s) 129, 154
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 3 cut(s) 31, 45, 123
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 225
HpyCH4III ACNGT 2 cut(s) 25, 196
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 4 cut(s) 143, 227, 239, 262
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 2 cut(s) 129, 154
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 2 cut(s) 287, 308
MaeI CTAG 3 cut(s) 335, 345, 389
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 2 cut(s) 48, 311
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 3 cut(s) 55, 87, 201
MmeI TCCRAC 3 cut(s) 23, 46, 146
MnlI CCTC 1 cut(s) 71
MseI TTAA 2 cut(s) 236, 270
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 143, 227, 239, 262
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 2 cut(s) 129, 154
NlaIV GGNNCC 1 cut(s) 282
NspI RCATGY 1 cut(s) 129
PagI TCATGA 1 cut(s) 150
PciI ACATGT 1 cut(s) 125
PkrI GCNGC 3 cut(s) 184, 208, 232
PscI ACATGT 1 cut(s) 125
PshAI GACNNNNGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 282
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 236, 270
SatI GCNGC 3 cut(s) 183, 207, 231
SduI GDGCHC 1 cut(s) 283
SetI ASST 7 cut(s) 251, 290, 303, 327, 346, 385, 390
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 3 cut(s) 55, 87, 201
SsiI CCGC 4 cut(s) 146, 182, 206, 230
SspI AATATT 1 cut(s) 117
SspMI CTAG 3 cut(s) 335, 345, 389
TaaI ACNGT 2 cut(s) 25, 196
TaiI ACGT 1 cut(s) 251
TasI AATT 3 cut(s) 55, 87, 201
TauI GCSGC 3 cut(s) 185, 209, 233
Tru1I TTAA 2 cut(s) 236, 270
Tru9I TTAA 2 cut(s) 236, 270
TspDTI ATGAA 2 cut(s) 166, 167
TspGWI ACGGA 1 cut(s) 389
XapI RAATTY 2 cut(s) 55, 87
XceI RCATGY 1 cut(s) 129
XspI CTAG 3 cut(s) 335, 345, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.