RchiOBHm_Chr4g0401351
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
19529661 .. 19537351
7691 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37328

Sequence Viewer

Length: 225 bp
ATGATCCAATCTACACTCAGACCAAAAACAAAAAAAAGCTTTCTGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAAAGAAGCCCATCAGGTTTACTTCTCAACAAATTTGGATTGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTATATTTAGTAATGGAACACTTGTGGCAGTGAAGATTTTGTGA

Protein Analysis

74

Amino Acids

8.33

Weight (kDa)

10.21

Isoelectric Point (pI)

15.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AcsI RAATTY 1 cut(s) 114
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
ApoI RAATTY 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 130
BccI CCATC 1 cut(s) 101
BseMII CTCAG 1 cut(s) 31
Bsp143I GATC 1 cut(s) 3
BspCNI CTCAG 1 cut(s) 30
BssMI GATC 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstXI CCANNNNNNTGG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
CviJI RGCY 2 cut(s) 39, 91
CviKI_1 RGCY 2 cut(s) 39, 91
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
FaiI YATR 3 cut(s) 77, 177, 185
HindIII AAGCTT 1 cut(s) 37
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 20, 45
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 82, 141
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MluCI AATT 2 cut(s) 61, 114
MnlI CCTC 1 cut(s) 152
NdeII GATC 1 cut(s) 3
PsiI TTATAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 3
SetI ASST 3 cut(s) 41, 101, 184
SgeI CNNG 4 cut(s) 109, 157, 168, 215
Sse9I AATT 2 cut(s) 61, 114
TasI AATT 2 cut(s) 61, 114
TscAI CASTG 1 cut(s) 216
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.