Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

27501849 .. 27502109

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1181900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGCTATTGTTTGAGATCATAGGAAGGAGAAGGAATCTCGACATCAATACTGAATATAGCCAAGATTGGTTCCCTAGGTGGGTATGGAAGAAGTTTGAACCCGATGAGTTAGGAGAGTTGATGGCAGTTTGTGGAATAGAGGAGAAAGATAAAGAGAGGGCAGAGGGAATGGTAAAGGTAGCTCTGTGGTGTGTACAGTACATGCCCGAGGCAAGGCCTTTGATGAGTGTCATGGTTAAAATGTTGGAAGGTGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

87

Amino Acids

10.18

Weight (kDa)

4.97

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	195, 200
AfiI	CCNNNNNNNGG	2 cut(s)	79, 213
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	1 cut(s)	215
AspA2I	CCTAGG	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	206
AvrII	CCTAGG	1 cut(s)	74
BccI	CCATC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	75
BlnI	CCTAGG	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	74, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 213
BseDI	CCNNGG	2 cut(s)	74, 207
BseLI	CCNNNNNNNGG	2 cut(s)	79, 213
BseRI	GAGGAG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	79, 213
BsnI	GGCC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	206
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	74, 207
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	193
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	194, 199
CviAII	CATG	2 cut(s)	202, 232
CviJI	RGCY	3 cut(s)	60, 182, 217
CviKI_1	RGCY	3 cut(s)	60, 182, 217
CviQI	GTAC	2 cut(s)	194, 199
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	74
Eco147I	AGGCCT	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	74
FaeI	CATG	2 cut(s)	205, 235
FaiI	YATR	5 cut(s)	20, 57, 85, 203, 233
FatI	CATG	2 cut(s)	201, 231
FspBI	CTAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	205, 235
HinfI	GANTC	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	38
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	18, 24, 242
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	205, 235
Kzo9I	GATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	75
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	133, 150, 157, 202
MseI	TTAA	1 cut(s)	237
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	2 cut(s)	205, 235
NlaIV	GGNNCC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	195, 200
RsaNI	GTAC	2 cut(s)	194, 199
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	15
SetI	ASST	4 cut(s)	80, 180, 184, 253
SgeI	CNNG	9 cut(s)	50, 74, 87, 113, 214, 218, 220, 225, 244
SseBI	AGGCCT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	39
TatI	WGTACW	2 cut(s)	193, 198
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
XceI	RCATGY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	74
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.