MD13G1250500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000690
Physical Location & Seq
Forward (+)
26584071 .. 26586432
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1250500.v1.1.491

Sequence Viewer

Length: 141 bp
ATGGGAGCAATAACATCTATTGCTATAGTCATGGTGTGCAAGAAATGTAAGGAACTCACAAGAAAGAAACAAATTCAGAATGGCAGCTTAGTGAGGATCACAAGTCTAGACTTTCAGACACTTGCAATGAACAACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

47

Amino Acids

5.1

Weight (kDa)

9.9

Isoelectric Point (pI)

5.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 72
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 72
BbvI GCAGC 1 cut(s) 96
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 96
BspPI GGATC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 132
BssMI GATC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 88
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 96
CviAII CATG 1 cut(s) 31
CviJI RGCY 1 cut(s) 87
CviKI_1 RGCY 1 cut(s) 87
DdeI CTNAG 1 cut(s) 88
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 26, 32
FatI CATG 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 1 cut(s) 107
FspEI CC 4 cut(s) 17, 35, 66, 79
GluI GCNGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 78, 117
Hpy188III TCNNGA 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 39, 125
HpyF3I CTNAG 1 cut(s) 88
Hsp92II CATG 1 cut(s) 34
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MluCI AATT 1 cut(s) 72
MnlI CCTC 1 cut(s) 87
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 86
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 96
SetI ASST 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 24
SgeI CNNG 6 cut(s) 43, 52, 72, 114, 119, 134
Sse9I AATT 1 cut(s) 72
SspMI CTAG 1 cut(s) 107
TasI AATT 1 cut(s) 72
TseI GCWGC 1 cut(s) 84
XapI RAATTY 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 106
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.