Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042918.1

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Reverse (-)

1552 .. 2274

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042918.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgtcaaatggttcgcttgataagtttctcttccatggaaacaagattttaggattcgaaaagcttcatgaaattgcagttaggacagctagagggattgcttacttgcacgaagaatgccagcagcgaatagtccactacgatataaaacctgaaaatattcttttggatgagaacttctttcctaaagtagctgactttggtttggccaagctgttcaacagagataagactcatatatcaatgacagggtggaggggaactcctggttatgctgcaccagaagtttggctgcagtgtcctataacccacaagtgtgatgtgtacagctttggaatgctattatttgagatcataggcagaagaaggaacctagacctcaatcttccggagggtcaagactggtttccaaggtggggatggaagaagtttgaagctggagaactaggagagctaatgctagtttgtggcatagaggagaaagacagagaggcagcagagagaatgttaaaggtggctatctgctgtgttcagtataggcccgagttgaggcctttaatgagtgctgtggtgaaaatgttggaaggagaaattgagattccaagaccttcaattaacccacttcagcactcgttgccaggcactcctgtcatggtatcgtatagcactagtgtcttcgacacggattcctctcgaacaataactggtgtggaaggatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

240

Amino Acids

27.36

Weight (kDa)

6.0

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	388
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	416, 549
AgsI	TTSAA	3 cut(s)	220, 434, 612
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	265, 637
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	7 cut(s)	64, 89, 194, 214, 330, 437, 454
AluI	AGCT	7 cut(s)	64, 89, 194, 214, 330, 437, 454
Ama87I	CYCGRG	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	3 cut(s)	207, 539, 551
ApeKI	GCWGC	4 cut(s)	124, 275, 292, 494
Asp700I	GAANNNNTTC	2 cut(s)	63, 159
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	667
BbvI	GCAGC	4 cut(s)	136, 262, 279, 506
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	2 cut(s)	267, 639
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	5 cut(s)	90, 374, 446, 461, 669
BfmI	CTRYAG	1 cut(s)	293
BisI	GCNGC	4 cut(s)	125, 276, 293, 495
BlsI	GCNGC	4 cut(s)	126, 277, 294, 496
Bme1390I	CCNGG	2 cut(s)	267, 639
BmeT110I	CYCGRG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	267, 639
BpiI	GAAGAC	1 cut(s)	667
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpmI	CTGGAG	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	34, 410
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 549
Bse1I	ACTGG	2 cut(s)	407, 709
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	267, 639
BseDI	CCNNGG	2 cut(s)	34, 410
BseGI	GGATG	3 cut(s)	175, 425, 722
BseLI	CCNNNNNNNGG	2 cut(s)	416, 549
BseNI	ACTGG	2 cut(s)	407, 709
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	4 cut(s)	136, 262, 279, 506
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	209, 541, 553
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	416, 549
BsmI	GAATGC	2 cut(s)	122, 342
BsnI	GGCC	3 cut(s)	209, 541, 553
BsoBI	CYCGRG	1 cut(s)	542
Bsp119I	TTCGAA	1 cut(s)	57
Bsp13I	TCCGGA	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	34
BspANI	GGCC	3 cut(s)	209, 541, 553
BspEI	TCCGGA	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	371
BspMAI	CTGCAG	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	407, 709
BssECI	CCNNGG	2 cut(s)	34, 410
BssMI	GATC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	34, 410
Bst2UI	CCWGG	2 cut(s)	267, 639
Bst6I	CTCTTC	1 cut(s)	35
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	175, 425, 722
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	634
BstNI	CCWGG	2 cut(s)	267, 639
BstSCI	CCNGG	2 cut(s)	265, 637
BstSFI	CTRYAG	1 cut(s)	293
BstV1I	GCAGC	4 cut(s)	136, 262, 279, 506
BstV2I	GAAGAC	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	209, 541, 553
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	175, 425, 722
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	122
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	540
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	35, 68, 652
CviQI	GTAC	1 cut(s)	325
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	34, 410
Eco147I	AGGCCT	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	608
Eco88I	CYCGRG	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	265, 637
EcoT14I	CCWWGG	2 cut(s)	34, 410
ErhI	CCWWGG	2 cut(s)	34, 410
FaeI	CATG	3 cut(s)	38, 71, 655
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	3 cut(s)	34, 67, 651
Fnu4HI	GCNGC	4 cut(s)	125, 276, 293, 495
FokI	GGATG	2 cut(s)	182, 432
Fsp4HI	GCNGC	4 cut(s)	125, 276, 293, 495
FspBI	CTAG	5 cut(s)	90, 374, 446, 461, 669
GluI	GCNGC	4 cut(s)	125, 276, 293, 495
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	209, 541, 553
HapII	CCGG	1 cut(s)	389
Hin1II	CATG	3 cut(s)	38, 71, 655
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	4 cut(s)	54, 232, 598, 686
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	136, 325
Hpy188III	TCNNGA	4 cut(s)	68, 389, 398, 693
Hpy8I	GTNNAC	2 cut(s)	136, 325
HpyAV	CCTTC	4 cut(s)	360, 578, 618, 707
HpyCH4V	TGCA	4 cut(s)	77, 109, 278, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	634
Hsp92II	CATG	3 cut(s)	38, 71, 655
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	351
Lsp1109I	GCAGC	4 cut(s)	136, 262, 279, 506
MaeI	CTAG	5 cut(s)	90, 374, 446, 461, 669
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	6 cut(s)	22, 125, 375, 377, 436, 667
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	3 cut(s)	72, 591, 612
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	8 cut(s)	86, 249, 385, 389, 469, 484, 543, 700
Mox20I	TGGCCA	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	2 cut(s)	63, 159
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	3 cut(s)	509, 557, 615
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	209
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	267, 639
Mva1269I	GAATGC	2 cut(s)	122, 342
MvaI	CCWGG	2 cut(s)	267, 639
MwoI	GCNNNNNNNGC	1 cut(s)	634
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	3 cut(s)	38, 71, 655
NlaIV	GGNNCC	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	315
PagI	TCATGA	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	553
PctI	GAATGC	2 cut(s)	122, 342
PdmI	GAANNNNTTC	2 cut(s)	63, 159
PfeI	GAWTC	3 cut(s)	54, 598, 686
PkrI	GCNGC	4 cut(s)	126, 277, 294, 496
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	265, 637
PspGI	CCWGG	2 cut(s)	265, 637
PspN4I	GGNNCC	1 cut(s)	371
PspPI	GGNCC	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	297
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	509, 557, 615
SatI	GCNGC	4 cut(s)	125, 276, 293, 495
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	540
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	267, 639
SfcI	CTRYAG	1 cut(s)	293
SfuI	TTCGAA	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	3 cut(s)	72, 591, 612
SseBI	AGGCCT	1 cut(s)	553
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	5 cut(s)	90, 374, 446, 461, 669
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	265, 637
StyI	CCWWGG	2 cut(s)	34, 410
TaqI	TCGA	3 cut(s)	57, 678, 694
TasI	AATT	3 cut(s)	72, 591, 612
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	54, 598, 686
Tru1I	TTAA	3 cut(s)	509, 557, 615
Tru9I	TTAA	3 cut(s)	509, 557, 615
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	4 cut(s)	124, 275, 292, 494
TspDTI	ATGAA	2 cut(s)	56, 84
TspGWI	ACGGA	1 cut(s)	698
TspRI	CASTG	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	417
XmnI	GAANNNNTTC	2 cut(s)	63, 159
XspI	CTAG	5 cut(s)	90, 374, 446, 461, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.