Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Reverse (-)

4472476 .. 4473278

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATCGATGAAGAACACACCCAAAATACCAAAACCCCAAATCCGACTGTGAATGGCGAATCTGGAACTCATGAACACTCGCACTCAAACTCAACCCCAAAAGTCAACAATGCAAGGTTCTCCATCTCTCATGTCGTCATCTCCACCTATCTCTGCTTTCTTGCTCGCACTCACTCAATAAGTTTGGGTCTTCTTTATCGCTCGCACTCGCTCGCAAGCGTTGTGGACGAGGAGAACACCAACCTCGCCACAAGGTTCTTCTCTAGCCTTCCGGGAAAGGACTTTCTGCCTTACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

99

Amino Acids

10.96

Weight (kDa)

6.35

Isoelectric Point (pI)

12.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AsuC2I	CCSGG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	182
BccI	CCATC	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	6
BseCI	ATCGAT	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	245
BshVI	ATCGAT	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	3
BspDI	ATCGAT	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	70
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	4 cut(s)	166, 203, 213, 217
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstSCI	CCNGG	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	182
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
Cac8I	GCNNGC	4 cut(s)	166, 203, 213, 217
CciI	TCATGA	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	2 cut(s)	71, 131
CviJI	RGCY	1 cut(s)	267
CviKI_1	RGCY	1 cut(s)	267
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
FaeI	CATG	2 cut(s)	74, 134
FaiI	YATR	2 cut(s)	72, 132
FatI	CATG	2 cut(s)	70, 130
FspBI	CTAG	1 cut(s)	264
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	2 cut(s)	74, 134
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	106, 226
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	63, 71
Hpy8I	GTNNAC	2 cut(s)	106, 226
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	74, 134
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	48, 285
MaeI	CTAG	1 cut(s)	264
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	23, 182, 250
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	223, 254
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	273
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	74, 134
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	4 cut(s)	119, 149, 246, 257
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	59
TspDTI	ATGAA	2 cut(s)	24, 87
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.