Rw4G008680
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
19055097 .. 19056173
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008680.1

Sequence Viewer

Length: 1077 bp
ATGGACAGTTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAAATTCGGATTGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTGTGTATGGTAATGGAACGCTTGTGGCAGTGAAGGTTCTAAAGGATACCTCGGACAAGAGAATTGATGAGCAATTCAGGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGAGAGCTTAGAGCACTGGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCGACGGAAACAGGATTGTAGGATTTGAAAAGCTTCATGACATTGCGGTTGGGACGGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAACGAATAGTCCACTATGATATAAAACCTGAAAATATTCTTTTGGATGTGAATTTCCTCCCCAAAGTTGCTGACTTCGGTTTGGCCAAGCTGATCAATAGGGACAATACTCATATAACAATGACAGGTGGGAGGGGAACTCCGGGTTATGCTGCACCAGAACTTTGGCTGCGGTTTGCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGCTGTTATTTGAGATCATAGGTAGAAGAAGGAACCATGACCTTAATCTTCCAGATAGCCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGAGAACTAATGGCAGTGTGTGGTATAGAGGAAAAAGATAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTATAGGTCCGAGTTGAGGCCCTTAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACACTCCTATCATGGCAGCATATAGCACTAGTGCCTTCGACACGGATTCCTCTCAAACAATAACTGGATATAACATTGTTTGTGAGACTCCCATCATGAAAAAATACGAGATTGAAATAGCGTCTACTTAA

Protein Analysis

358

Amino Acids

40.86

Weight (kDa)

5.97

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 28 - 295 5.2e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 223 4e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AccI GTMKAC 1 cut(s) 1070
AciI CCGC 3 cut(s) 209, 383, 601
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 3 cut(s) 60, 481, 896
AfaI GTAC 2 cut(s) 220, 632
AfiI CCNNNNNNNGG 2 cut(s) 722, 855
AgsI TTSAA 4 cut(s) 365, 740, 918, 1061
AhlI ACTAGT 1 cut(s) 974
AjuI GAANNNNNNNTTGG 2 cut(s) 696, 728
AleI CACNNNNGTG 1 cut(s) 621
AluBI AGCT 6 cut(s) 283, 370, 520, 636, 743, 824
AluI AGCT 6 cut(s) 283, 370, 520, 636, 743, 824
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 260, 1025
AoxI GGCC 2 cut(s) 513, 857
ApeKI GCWGC 4 cut(s) 581, 598, 800, 962
ApoI RAATTY 3 cut(s) 60, 481, 896
AseI ATTAAT 1 cut(s) 921
Asp700I GAANNNNTTC 2 cut(s) 369, 465
AspS9I GGNCC 2 cut(s) 846, 858
AsuC2I CCSGG 1 cut(s) 573
AsuHPI GGTGA 3 cut(s) 76, 758, 889
AvaII GGWCC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 515
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 568, 585, 812, 974
BccI CCATC 3 cut(s) 47, 720, 1046
BceAI ACGGC 1 cut(s) 408
BciVI GTATCC 1 cut(s) 166
BclI TGATCA 1 cut(s) 522
BcnI CCSGG 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 260, 1025
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 4 cut(s) 396, 752, 909, 975
BfuI GTATCC 1 cut(s) 166
BisI GCNGC 4 cut(s) 582, 599, 801, 963
BlsI GCNGC 4 cut(s) 583, 600, 802, 964
Bme1390I CCNGG 1 cut(s) 573
Bme18I GGWCC 1 cut(s) 846
BmgT120I GGNCC 2 cut(s) 846, 858
BmiI GGNNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 1 cut(s) 930
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpuMI CCSGG 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 177, 259, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 722, 855
Bse1I ACTGG 3 cut(s) 297, 713, 1015
Bse3DI GCAATG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 177, 259, 716
BseGI GGATG 2 cut(s) 481, 731
BseLI CCNNNNNNNGG 2 cut(s) 722, 855
BseMI GCAATG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 297, 713, 1015
BseXI GCAGC 4 cut(s) 568, 585, 812, 974
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 2 cut(s) 515, 859
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 2 cut(s) 403, 545
BslI CCNNNNNNNGG 2 cut(s) 722, 855
BsmAI GTCTC 2 cut(s) 260, 1025
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 403, 545
BsmI GAATGC 2 cut(s) 428, 648
BsnI GGCC 2 cut(s) 515, 859
Bsp1286I GDGCHC 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 522, 657
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 3 cut(s) 209, 383, 601
BspANI GGCC 2 cut(s) 515, 859
BspHI TCATGA 2 cut(s) 373, 1041
BspLI GGNNCC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 3 cut(s) 297, 713, 1015
BssECI CCNNGG 3 cut(s) 177, 259, 716
BssMI GATC 2 cut(s) 522, 657
BssT1I CCWWGG 2 cut(s) 259, 716
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 940
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 284
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 2 cut(s) 481, 731
BstKTI GATC 2 cut(s) 525, 660
BstMAI GTCTC 2 cut(s) 260, 1025
BstMBI GATC 2 cut(s) 522, 657
BstMWI GCNNNNNNNGC 1 cut(s) 940
BstSCI CCNGG 1 cut(s) 571
BstV1I GCAGC 4 cut(s) 568, 585, 812, 974
BstXI CCANNNNNNTGG 2 cut(s) 94, 594
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 2 cut(s) 515, 859
BtgI CCRYGG 1 cut(s) 259
BtsCI GGATG 2 cut(s) 481, 731
BtsI GCAGTG 2 cut(s) 162, 774
BtsIMutI CAGTG 3 cut(s) 162, 290, 774
Cac8I GCNNGC 1 cut(s) 428
CciI TCATGA 2 cut(s) 373, 1041
Cfr13I GGNCC 2 cut(s) 846, 858
CseI GACGC 1 cut(s) 1056
Csp6I GTAC 2 cut(s) 219, 631
CviAII CATG 6 cut(s) 239, 260, 374, 680, 958, 1042
CviQI GTAC 2 cut(s) 219, 631
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 524, 659
DpnII GATC 2 cut(s) 522, 657
EaeI YGGCCR 1 cut(s) 513
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 259, 716
Eco47I GGWCC 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 858
EcoT14I CCWWGG 2 cut(s) 259, 716
ErhI CCWWGG 2 cut(s) 259, 716
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 6 cut(s) 242, 263, 377, 683, 961, 1045
FaqI GGGAC 2 cut(s) 403, 545
FatI CATG 6 cut(s) 238, 259, 373, 679, 957, 1041
FbaI TGATCA 1 cut(s) 522
FblI GTMKAC 1 cut(s) 1070
Fnu4HI GCNGC 4 cut(s) 582, 599, 801, 963
FokI GGATG 2 cut(s) 488, 738
Fsp4HI GCNGC 4 cut(s) 582, 599, 801, 963
FspBI CTAG 4 cut(s) 396, 752, 909, 975
GluI GCNGC 4 cut(s) 582, 599, 801, 963
HaeIII GGCC 2 cut(s) 515, 859
HapII CCGG 1 cut(s) 572
HgaI GACGC 1 cut(s) 1056
Hin1II CATG 6 cut(s) 242, 263, 377, 683, 961, 1045
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 4 cut(s) 232, 904, 992, 1033
HpaII CCGG 1 cut(s) 572
HphI GGTGA 3 cut(s) 76, 758, 889
Hpy166II GTNNAC 7 cut(s) 48, 221, 244, 442, 631, 749, 1071
Hpy188I TCNGA 3 cut(s) 66, 181, 850
Hpy188III TCNNGA 4 cut(s) 102, 374, 695, 1042
Hpy8I GTNNAC 7 cut(s) 48, 221, 244, 442, 631, 749, 1071
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 5 cut(s) 154, 666, 884, 924, 991
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 71, 415, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 940
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 6 cut(s) 242, 263, 377, 683, 961, 1045
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 2 cut(s) 522, 657
Lsp1109I GCAGC 4 cut(s) 568, 585, 812, 974
LweI GCATC 1 cut(s) 930
MaeI CTAG 4 cut(s) 396, 752, 909, 975
MalI GATC 2 cut(s) 524, 659
MboI GATC 2 cut(s) 522, 657
MboII GAAGA 4 cut(s) 431, 681, 683, 742
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 6 cut(s) 60, 189, 200, 481, 896, 918
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 9 cut(s) 98, 187, 392, 497, 555, 775, 790, 849, 1006
Mox20I TGGCCA 1 cut(s) 515
MroXI GAANNNNTTC 2 cut(s) 369, 465
MscI TGGCCA 1 cut(s) 515
MseI TTAA 5 cut(s) 687, 815, 863, 921, 1075
MslI CAYNNNNRTG 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 428, 648
MwoI GCNNNNNNNGC 1 cut(s) 940
NciI CCSGG 1 cut(s) 573
NcoI CCATGG 1 cut(s) 259
NdeII GATC 2 cut(s) 522, 657
NlaIII CATG 6 cut(s) 242, 263, 377, 683, 961, 1045
NlaIV GGNNCC 1 cut(s) 677
OliI CACNNNNGTG 1 cut(s) 621
PagI TCATGA 2 cut(s) 373, 1041
PctI GAATGC 2 cut(s) 428, 648
PdmI GAANNNNTTC 2 cut(s) 369, 465
PfeI GAWTC 3 cut(s) 232, 904, 992
PkrI GCNGC 4 cut(s) 583, 600, 802, 964
PleI GAGTC 1 cut(s) 1027
PpsI GAGTC 1 cut(s) 1027
PshBI ATTAAT 1 cut(s) 921
PsiI TTATAA 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 677
PspPI GGNCC 2 cut(s) 846, 858
RsaI GTAC 2 cut(s) 220, 632
RsaNI GTAC 2 cut(s) 219, 631
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 5 cut(s) 687, 815, 863, 921, 1075
SatI GCNGC 4 cut(s) 582, 599, 801, 963
Sau3AI GATC 2 cut(s) 522, 657
Sau96I GGNCC 2 cut(s) 846, 858
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 1 cut(s) 930
SinI GGWCC 1 cut(s) 846
SmiMI CAYNNNNRTG 1 cut(s) 621
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 6 cut(s) 60, 189, 200, 481, 896, 918
SsiI CCGC 3 cut(s) 209, 383, 601
SspI AATATT 1 cut(s) 466
SspMI CTAG 4 cut(s) 396, 752, 909, 975
StyD4I CCNGG 1 cut(s) 571
StyI CCWWGG 2 cut(s) 259, 716
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 339, 984
TasI AATT 6 cut(s) 60, 189, 200, 481, 896, 918
TatI WGTACW 2 cut(s) 218, 630
TfiI GAWTC 3 cut(s) 232, 904, 992
Tru1I TTAA 5 cut(s) 687, 815, 863, 921, 1075
Tru9I TTAA 5 cut(s) 687, 815, 863, 921, 1075
TscAI CASTG 3 cut(s) 162, 297, 774
TseI GCWGC 4 cut(s) 581, 598, 800, 962
TspDTI ATGAA 3 cut(s) 224, 362, 1058
TspGWI ACGGA 2 cut(s) 357, 1004
TspRI CASTG 3 cut(s) 162, 297, 774
VpaK11BI GGWCC 1 cut(s) 846
VspI ATTAAT 1 cut(s) 921
XapI RAATTY 3 cut(s) 60, 481, 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 723
XmiI GTMKAC 1 cut(s) 1070
XmnI GAANNNNTTC 2 cut(s) 369, 465
XspI CTAG 4 cut(s) 396, 752, 909, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.