Rw4G008650
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
19011609 .. 19012685
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008650.1

Sequence Viewer

Length: 1077 bp
ATGGACAAATTTCTGAATGACATGGAAAGAGAGAAGCCCATCAGATTTACTTCTCAACAACTTCGGATTGCAACTGATAACTTCACCAACTTGCTGGGATCAGGAGGGTTTGGTGCAGTTTATAAAGGAATATTTAGTAATGGAACCCTTGTGGCAGTCAAGGTTCTGAATGGTACCTCTGACAAGAGAATTGAAGAACAATTCATGGCGGAAGTTAGTACCCTTGGCAGGATTCATCATTTCAACTTGGTTCGTCTTCATGGTTTCTGCTTTGAGAGACACCTCAGAGCACTTGTTTATGAGTATATGCCAAACGGTTCACTTGACAAGTTTCTGTTCCATGGAAACAGGATTGTAGGATTTGAAAAGCTTCATGACATTGCGGTTGGGACAGCTAGAGCGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGACATAAAGCCTGAAAATATTCTTTTGGATGTGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTCCAACAGAGATAACACTCATATAACAATGACAGGGGGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCGGTTTCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGTATGCTATTATTTGAGATCATTGGTAGAAGAAGGAACCTAGACCTGAATCTTCCGGACAGTCAAGACTGGTTTCCGAGGTGGGTATGGAAGAAGTTTGAAGCTGGACAACTGGGAGAGCTAATGCTTGTTTGTGGCATAGAGGAGAAAGATAAAGAGATAGCAGAGAGAATGGTAAAAATAGCTTTATGGTGTGTTCAGTATAGGCCTGAGTTGAGGCCTTTGATGAGTGTGGTGGTGAAAATGCTGGAAGGAGCACTTGAAATTCCTAAACCTTCAATTAACCCATTTCAGCACTTGATGCCAGGCACTCCTATCATGGTAGCATATAGCACTAGTGTGTTCGACACTGATTCCTCTCAAACAATAACTGGATATAGCTTCTTGCGTGGTACTCCTATCATGAAGAAATACGAGATTGAAATAGCATCCATCTAG

Protein Analysis

358

Amino Acids

40.93

Weight (kDa)

7.7

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 28 - 295 8.3e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 30 - 287 5.5e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 3 cut(s) 209, 383, 601
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 513
AcsI RAATTY 2 cut(s) 8, 903
AfaI GTAC 4 cut(s) 175, 220, 632, 1033
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 7 cut(s) 194, 244, 365, 740, 902, 918, 1061
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 2 cut(s) 571, 943
AleI CACNNNNGTG 2 cut(s) 621, 977
AluBI AGCT 9 cut(s) 370, 395, 500, 520, 636, 743, 760, 824, 1020
AluI AGCT 9 cut(s) 370, 395, 500, 520, 636, 743, 760, 824, 1020
Alw21I GWGCWC 2 cut(s) 292, 898
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 694
AoxI GGCC 3 cut(s) 513, 845, 857
ApeKI GCWGC 3 cut(s) 430, 581, 598
ApoI RAATTY 2 cut(s) 8, 903
Asp700I GAANNNNTTC 2 cut(s) 369, 465
Asp718I GGTACC 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 76, 889
BalI TGGCCA 1 cut(s) 515
BanI GGYRCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 292, 898
BbvI GCAGC 3 cut(s) 442, 568, 585
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 2 cut(s) 573, 945
BcoDI GTCTC 1 cut(s) 271
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 4 cut(s) 396, 680, 975, 1075
BisI GCNGC 3 cut(s) 431, 582, 599
BlsI GCNGC 3 cut(s) 432, 583, 600
Bme1390I CCNGG 2 cut(s) 573, 945
BmiI GGNNCC 3 cut(s) 145, 175, 677
BmrFI CCNGG 2 cut(s) 573, 945
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 1 cut(s) 930
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BsaJI CCNNGG 3 cut(s) 223, 340, 716
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 3 cut(s) 713, 756, 1015
Bse3DI GCAATG 1 cut(s) 378
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 2 cut(s) 573, 945
BseDI CCNNGG 3 cut(s) 223, 340, 716
BseGI GGATG 2 cut(s) 481, 1067
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 298, 840
BseNI ACTGG 3 cut(s) 713, 756, 1015
BseRI GAGGAG 1 cut(s) 797
BseXI GCAGC 3 cut(s) 442, 568, 585
BseYI CCCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 135, 567
BshFI GGCC 3 cut(s) 515, 847, 859
BshNI GGYRCC 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 292, 898
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 3 cut(s) 515, 847, 859
Bsp1286I GDGCHC 2 cut(s) 292, 898
Bsp13I TCCGGA 1 cut(s) 694
Bsp1407I TGTACA 1 cut(s) 630
Bsp143I GATC 2 cut(s) 98, 657
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 3 cut(s) 209, 383, 601
BspANI GGCC 3 cut(s) 515, 847, 859
BspCNI CTCAG 2 cut(s) 297, 841
BspEI TCCGGA 1 cut(s) 694
BspHI TCATGA 2 cut(s) 373, 1041
BspLI GGNNCC 3 cut(s) 145, 175, 677
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 378
BsrGI TGTACA 1 cut(s) 630
BsrI ACTGG 3 cut(s) 713, 756, 1015
BssECI CCNNGG 3 cut(s) 223, 340, 716
BssMI GATC 2 cut(s) 98, 657
BssT1I CCWWGG 2 cut(s) 223, 340
Bst2UI CCWGG 2 cut(s) 573, 945
Bst4CI ACNGT 2 cut(s) 317, 701
BstAPI GCANNNNNTGC 1 cut(s) 940
BstAUI TGTACA 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 428
BstDEI CTNAG 2 cut(s) 284, 849
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 481, 1067
BstKTI GATC 2 cut(s) 101, 660
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 2 cut(s) 98, 657
BstMWI GCNNNNNNNGC 1 cut(s) 940
BstNI CCWGG 2 cut(s) 573, 945
BstSCI CCNGG 2 cut(s) 571, 943
BstV1I GCAGC 3 cut(s) 442, 568, 585
BstV2I GAAGAC 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 94, 594
BsuRI GGCC 3 cut(s) 515, 847, 859
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 2 cut(s) 481, 1067
BtsIMutI CAGTG 1 cut(s) 987
Cac8I GCNNGC 1 cut(s) 428
CciI TCATGA 2 cut(s) 373, 1041
Csp6I GTAC 4 cut(s) 174, 219, 631, 1032
CviAII CATG 7 cut(s) 22, 205, 260, 341, 374, 958, 1042
CviQI GTAC 4 cut(s) 174, 219, 631, 1032
DdeI CTNAG 2 cut(s) 284, 849
DpnI GATC 2 cut(s) 100, 659
DpnII GATC 2 cut(s) 98, 657
EaeI YGGCCR 1 cut(s) 513
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 223, 340
Eco147I AGGCCT 2 cut(s) 847, 859
EcoRII CCWGG 2 cut(s) 571, 943
EcoT14I CCWWGG 2 cut(s) 223, 340
ErhI CCWWGG 2 cut(s) 223, 340
FaeI CATG 7 cut(s) 25, 208, 263, 344, 377, 961, 1045
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FaqI GGGAC 1 cut(s) 403
FatI CATG 7 cut(s) 21, 204, 259, 340, 373, 957, 1041
Fnu4HI GCNGC 3 cut(s) 431, 582, 599
FokI GGATG 2 cut(s) 488, 1054
Fsp4HI GCNGC 3 cut(s) 431, 582, 599
FspBI CTAG 4 cut(s) 396, 680, 975, 1075
GluI GCNGC 3 cut(s) 431, 582, 599
GsaI CCCAGC 1 cut(s) 98
HaeIII GGCC 3 cut(s) 515, 847, 859
HapII CCGG 1 cut(s) 695
Hin1II CATG 7 cut(s) 25, 208, 263, 344, 377, 961, 1045
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 3 cut(s) 232, 688, 992
HpaII CCGG 1 cut(s) 695
HphI GGTGA 2 cut(s) 76, 889
Hpy166II GTNNAC 4 cut(s) 320, 442, 481, 631
Hpy188I TCNGA 7 cut(s) 15, 44, 66, 168, 181, 287, 717
Hpy188III TCNNGA 5 cut(s) 102, 374, 695, 704, 1042
Hpy8I GTNNAC 4 cut(s) 320, 442, 481, 631
HpyAV CCTTC 3 cut(s) 666, 884, 924
HpyCH4III ACNGT 2 cut(s) 317, 701
HpyCH4V TGCA 4 cut(s) 71, 116, 415, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 940
HpyF3I CTNAG 2 cut(s) 284, 849
Hsp92II CATG 7 cut(s) 25, 208, 263, 344, 377, 961, 1045
Kpn2I TCCGGA 1 cut(s) 694
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 98, 657
LmnI GCTCC 1 cut(s) 893
Lsp1109I GCAGC 3 cut(s) 442, 568, 585
LweI GCATC 1 cut(s) 930
MaeI CTAG 4 cut(s) 396, 680, 975, 1075
MalI GATC 2 cut(s) 100, 659
MboI GATC 2 cut(s) 98, 657
MboII GAAGA 7 cut(s) 206, 248, 431, 681, 683, 742, 1057
MhlI GDGCHC 2 cut(s) 292, 898
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 5 cut(s) 8, 189, 200, 903, 918
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 8 cut(s) 98, 187, 293, 555, 711, 775, 849, 1006
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 694
MroXI GAANNNNTTC 2 cut(s) 369, 465
MscI TGGCCA 1 cut(s) 515
MseI TTAA 1 cut(s) 921
MslI CAYNNNNRTG 2 cut(s) 621, 977
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 2 cut(s) 573, 945
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 573, 945
MwoI GCNNNNNNNGC 1 cut(s) 940
NcoI CCATGG 1 cut(s) 340
NdeII GATC 2 cut(s) 98, 657
NlaIII CATG 7 cut(s) 25, 208, 263, 344, 377, 961, 1045
NlaIV GGNNCC 3 cut(s) 145, 175, 677
OliI CACNNNNGTG 2 cut(s) 621, 977
PagI TCATGA 2 cut(s) 373, 1041
PceI AGGCCT 2 cut(s) 847, 859
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 2 cut(s) 369, 465
PfeI GAWTC 3 cut(s) 232, 688, 992
PkrI GCNGC 3 cut(s) 432, 583, 600
PsiI TTATAA 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 571, 943
PspFI CCCAGC 1 cut(s) 94
PspGI CCWGG 2 cut(s) 571, 943
PspN4I GGNNCC 3 cut(s) 145, 175, 677
RsaI GTAC 4 cut(s) 175, 220, 632, 1033
RsaNI GTAC 4 cut(s) 174, 219, 631, 1032
RseI CAYNNNNRTG 2 cut(s) 621, 977
SaqAI TTAA 1 cut(s) 921
SatI GCNGC 3 cut(s) 431, 582, 599
Sau3AI GATC 2 cut(s) 98, 657
ScrFI CCNGG 2 cut(s) 573, 945
SduI GDGCHC 2 cut(s) 292, 898
SfaNI GCATC 1 cut(s) 930
SmiMI CAYNNNNRTG 2 cut(s) 621, 977
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 5 cut(s) 8, 189, 200, 903, 918
SseBI AGGCCT 2 cut(s) 847, 859
SsiI CCGC 3 cut(s) 209, 383, 601
SspI AATATT 2 cut(s) 132, 466
SspMI CTAG 4 cut(s) 396, 680, 975, 1075
StuI AGGCCT 2 cut(s) 847, 859
StyD4I CCNGG 2 cut(s) 571, 943
StyI CCWWGG 2 cut(s) 223, 340
TaaI ACNGT 2 cut(s) 317, 701
TaqI TCGA 1 cut(s) 984
TasI AATT 5 cut(s) 8, 189, 200, 903, 918
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 3 cut(s) 232, 688, 992
Tru1I TTAA 1 cut(s) 921
Tru9I TTAA 1 cut(s) 921
TscAI CASTG 1 cut(s) 994
TseI GCWGC 3 cut(s) 430, 581, 598
TspDTI ATGAA 5 cut(s) 193, 224, 248, 362, 1058
TspRI CASTG 1 cut(s) 994
XapI RAATTY 2 cut(s) 8, 903
XmnI GAANNNNTTC 2 cut(s) 369, 465
XspI CTAG 4 cut(s) 396, 680, 975, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.