MD13G1250900.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
26614099 .. 26614940
842 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1250900.v1.1.491

Sequence Viewer

Length: 687 bp
ATGAATAAGTTTCTAAACGATATGAAAAGAGAGAAGCCCGTCAGGTTCACTTCTCAACAACTTCGCATTGCCACTTATAATTTCACCAACCTGTTGGGCCGAGGAGGTTTTGTTGCAGTTTATAAAGGGATATTTAGCAATGGAACCCTTGTGGCCGTTATGGTTCTAAATGGGAGCTCAGACAAAAGAATCGAGGAACAATTCATGGCAGAAGTTAGTACAATCGGAAAAATCCATCACTTCAATCTGATCGCTTACTTGCACAAAGAATGTCAACAACGAACAATCCATTACGACATAAAACCTAAAAATATTCTTTTGGATGCAAACTTCTTTCCAAAGGTAGTTGATTTCGTTTTGGCCAAGCTGTGTAACAGGGACAATACTCACATAACCATGACAGGGGGGAGTGGGACTCCAGGTTATGTTGCACCGAAAGTTTGTCTGAGGTTTCCTATAACACAGAAATGTGATGTGTACAACTTTGGAATGCTATTGTTTGAGATCATAAACAGGAGAAAGAATCTCGACAACTATATTCAAGAAAGCCAAGATTCGTTCTCGAGTTGGGTATGGAAGAAGTTTGAACGGGGGGAATTAGGAGAGCTGATGGTAGTTTGTGGAATAGAGGAGAAAAATAAAGACAACGCAGAGAGAATGGTAAAGGTAGCTTTGTGGTGTGTGTAG

Protein Analysis

229

Amino Acids

26.25

Weight (kDa)

9.18

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 84 - 178 2e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 86 - 173 6.8e-13 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 78, 123
AcoI YGGCCR 2 cut(s) 153, 360
AfaI GTAC 2 cut(s) 220, 479
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 3 cut(s) 244, 542, 587
AjnI CCWGG 1 cut(s) 418
AluBI AGCT 4 cut(s) 177, 367, 607, 671
AluI AGCT 4 cut(s) 177, 367, 607, 671
Alw21I GWGCWC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 3 cut(s) 97, 153, 360
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 562
BalI TGGCCA 1 cut(s) 362
BanII GRGCYC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 2 cut(s) 243, 604
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 313
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 1 cut(s) 402
Bse3DI GCAATG 2 cut(s) 66, 145
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 402
BseMI GCAATG 2 cut(s) 66, 145
BseMII CTCAG 2 cut(s) 192, 437
BseRI GAGGAG 2 cut(s) 117, 644
BshFI GGCC 3 cut(s) 99, 155, 362
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 562
BslFI GGGAC 2 cut(s) 392, 427
BslI CCNNNNNNNGG 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 392, 427
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 3 cut(s) 99, 155, 362
BsoBI CYCGRG 1 cut(s) 562
Bsp1286I GDGCHC 1 cut(s) 179
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 2 cut(s) 249, 504
BspANI GGCC 3 cut(s) 99, 155, 362
BspCNI CTCAG 2 cut(s) 191, 438
BspLI GGNNCC 1 cut(s) 145
BsrDI GCAATG 2 cut(s) 66, 145
BsrGI TGTACA 1 cut(s) 477
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 2 cut(s) 249, 504
Bst2UI CCWGG 1 cut(s) 420
BstAUI TGTACA 1 cut(s) 477
BstDEI CTNAG 2 cut(s) 178, 446
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 2 cut(s) 252, 507
BstMBI GATC 2 cut(s) 249, 504
BstNI CCWGG 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 418
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 3 cut(s) 99, 155, 362
BtsCI GGATG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 219, 478
CviAII CATG 2 cut(s) 205, 397
CviJI RGCY 9 cut(s) 37, 99, 155, 177, 362, 367, 549, 607, 671
CviKI_1 RGCY 9 cut(s) 37, 99, 155, 177, 362, 367, 549, 607, 671
CviQI GTAC 2 cut(s) 219, 478
DdeI CTNAG 2 cut(s) 178, 446
DpnI GATC 2 cut(s) 251, 506
DpnII GATC 2 cut(s) 249, 504
EaeI YGGCCR 2 cut(s) 153, 360
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 2 cut(s) 208, 400
FaqI GGGAC 2 cut(s) 392, 427
FatI CATG 2 cut(s) 204, 396
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 3 cut(s) 99, 155, 362
Hin1II CATG 2 cut(s) 208, 400
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HinfI GANTC 4 cut(s) 189, 415, 523, 554
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 3 cut(s) 48, 275, 478
Hpy188I TCNGA 4 cut(s) 181, 227, 249, 447
Hpy188III TCNNGA 3 cut(s) 527, 542, 562
Hpy8I GTNNAC 3 cut(s) 48, 275, 478
HpyCH4V TGCA 4 cut(s) 116, 262, 326, 431
HpyF3I CTNAG 2 cut(s) 178, 446
Hsp92II CATG 2 cut(s) 208, 400
Kzo9I GATC 2 cut(s) 249, 504
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 7 cut(s) 28, 104, 361, 387, 405, 432, 499
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 251, 506
MboI GATC 2 cut(s) 249, 504
MboII GAAGA 1 cut(s) 589
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 362
MluCI AATT 3 cut(s) 79, 200, 596
MluNI TGGCCA 1 cut(s) 362
MlyI GAGTC 1 cut(s) 409
MnlI CCTC 5 cut(s) 95, 98, 187, 441, 622
Mox20I TGGCCA 1 cut(s) 362
MscI TGGCCA 1 cut(s) 362
MslI CAYNNNNRTG 2 cut(s) 395, 466
Msp20I TGGCCA 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 1 cut(s) 420
NdeII GATC 2 cut(s) 249, 504
NlaIII CATG 2 cut(s) 208, 400
NlaIV GGNNCC 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 562
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 189, 523, 554
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PsiI TTATAA 2 cut(s) 78, 123
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 2 cut(s) 220, 479
RsaNI GTAC 2 cut(s) 219, 478
RseI CAYNNNNRTG 2 cut(s) 395, 466
SacI GAGCTC 1 cut(s) 179
Sau3AI GATC 2 cut(s) 249, 504
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 562
SlaI CTCGAG 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 395, 466
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 3 cut(s) 79, 200, 596
SspI AATATT 1 cut(s) 313
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 418
TaqI TCGA 3 cut(s) 192, 528, 563
TasI AATT 3 cut(s) 79, 200, 596
TatI WGTACW 2 cut(s) 218, 477
TfiI GAWTC 3 cut(s) 189, 523, 554
TspDTI ATGAA 3 cut(s) 17, 38, 193
XhoI CTCGAG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.