pycom16g18410
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
15002893 .. 15003420
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g18410.1

Sequence Viewer

Length: 381 bp
ATGTCGACTGACTCGACTCCAGAGTCACCAGATGGTGGAACCACTAATCTTGATCTAATCTTGGGAGTAGGAGCGGTCTTAGTGAATACTTTTGTCTTGGTTGTAGTGTGCAAGAATCGTCGGAAACGCGCAAGAGAGAGAAGTCAGAAAGAGCGCTTAGTGCAGATCGTTTCCCCGGACGATCGGACGCTCACAACGGAGAAGATCATTACTCCAGACTTTCGGGCACTCACAATGGACAACTTTATAAATGATATGGAAAGAGAAAAGCCCGTTAGGTTCACTTCTCAACAACTTCGGATTGCGACTGATAACTTCACCAATTTGTTAGGCCGAGGAGGTTTTGGTGCAGTTTATAAAGGAATATTTAAGTATCAATGA

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

9.51

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 248, 357
AasI GACNNNNNNGTC 1 cut(s) 22
AccB7I CCANNNNNTGG 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 74
AfeI AGCGCT 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 155
AoxI GGCC 1 cut(s) 331
AspLEI GCGC 2 cut(s) 131, 156
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 18, 310
BaeGI GKGCMC 1 cut(s) 229
BccI CCATC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 176
BpmI CTGGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 174, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 174, 334
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 229
BsgI GTGCAG 2 cut(s) 182, 369
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 4 cut(s) 52, 165, 181, 204
BspACI CCGC 1 cut(s) 74
BspANI GGCC 1 cut(s) 333
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 174, 334
BssMI GATC 4 cut(s) 52, 165, 181, 204
BstDEI CTNAG 2 cut(s) 79, 157
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 2 cut(s) 131, 156
BstKTI GATC 4 cut(s) 55, 168, 184, 207
BstMBI GATC 4 cut(s) 52, 165, 181, 204
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 174
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 333
CfoI GCGC 2 cut(s) 131, 156
CseI GACGC 1 cut(s) 196
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviJI RGCY 2 cut(s) 271, 333
CviKI_1 RGCY 2 cut(s) 271, 333
DdeI CTNAG 2 cut(s) 79, 157
DpnI GATC 4 cut(s) 54, 167, 183, 206
DpnII GATC 4 cut(s) 52, 165, 181, 204
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 155
FaiI YATR 3 cut(s) 248, 257, 357
FblI GTMKAC 1 cut(s) 5
GlaI GCGC 2 cut(s) 130, 155
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 196
HhaI GCGC 2 cut(s) 131, 156
Hin6I GCGC 2 cut(s) 129, 154
HinP1I GCGC 2 cut(s) 129, 154
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 4 cut(s) 11, 16, 23, 115
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 18, 310
Hpy166II GTNNAC 2 cut(s) 6, 282
Hpy188I TCNGA 4 cut(s) 123, 147, 186, 300
Hpy188III TCNNGA 3 cut(s) 20, 50, 215
Hpy8I GTNNAC 2 cut(s) 6, 282
Hpy99I CGWCG 1 cut(s) 123
HpyCH4V TGCA 3 cut(s) 111, 163, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 79, 157
HspAI GCGC 2 cut(s) 129, 154
Kzo9I GATC 4 cut(s) 52, 165, 181, 204
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 33, 42, 189, 228
MaeIII GTNAC 1 cut(s) 24
MalI GATC 4 cut(s) 54, 167, 183, 206
MbiI CCGCTC 1 cut(s) 74
MboI GATC 4 cut(s) 52, 165, 181, 204
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 322
MlyI GAGTC 3 cut(s) 5, 10, 32
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 2 cut(s) 329, 332
MseI TTAA 1 cut(s) 369
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 176
NdeII GATC 4 cut(s) 52, 165, 181, 204
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 359
NmuCI GTSAC 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 35
Ple19I CGATCG 1 cut(s) 184
PleI GAGTC 3 cut(s) 5, 10, 31
PpsI GAGTC 3 cut(s) 5, 10, 31
PsiI TTATAA 2 cut(s) 248, 357
PspN4I GGNNCC 1 cut(s) 40
PvuI CGATCG 1 cut(s) 184
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 369
Sau3AI GATC 4 cut(s) 52, 165, 181, 204
SchI GAGTC 3 cut(s) 5, 10, 32
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 229
SetI ASST 2 cut(s) 281, 343
Sse9I AATT 1 cut(s) 322
SsiI CCGC 1 cut(s) 74
SspI AATATT 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 174
TaqI TCGA 2 cut(s) 5, 14
TasI AATT 1 cut(s) 322
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 212
Van91I CCANNNNNTGG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.