Rmu_sc0001524.1_g000025
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001524.1
Physical Location & Seq
Reverse (-)
92924 .. 93259
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001524.1_g000025.1.cds

Sequence Viewer

Length: 336 bp
atggaaagagagaagcccatcaggtttacttctcagcaaatttggattgcaactgagaacttcaccaacttcttgggttcaggagggtttggttcagtttataaaggtgtatttagtaatggaacgcttgtggcagtgaaggttctaaggggtacctcagacaagagaattcatgagcaattcatggcggaagttagtacacttggcaggattcatcatgtcaacttggttcgtctccatggtttctgctttgagagacacctcagagcgcttgtttatgagtatatgtcaaatggttcgcttgacaagtttcttttccatggaaacaagatttga

Protein Analysis

111

Amino Acids

12.72

Weight (kDa)

9.72

Isoelectric Point (pI)

20.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 152
AciI CCGC 1 cut(s) 188
AcsI RAATTY 2 cut(s) 39, 168
AfaI GTAC 2 cut(s) 154, 199
AfeI AGCGCT 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 239, 250
Aor51HI AGCGCT 1 cut(s) 270
ApoI RAATTY 2 cut(s) 39, 168
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 152
BccI CCATC 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 239, 250
BfoI RGCGCY 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 238, 319
BseDI CCNNGG 2 cut(s) 238, 319
BseMII CTCAG 4 cut(s) 45, 47, 171, 277
BshNI GGYRCC 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 239, 250
BsmBI CGTCTC 1 cut(s) 239
Bsp19I CCATGG 2 cut(s) 238, 319
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 4 cut(s) 46, 46, 170, 276
BspHI TCATGA 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 238, 319
BssT1I CCWWGG 2 cut(s) 238, 319
BstDEI CTNAG 5 cut(s) 33, 54, 146, 157, 263
BstDSI CCRYGG 2 cut(s) 238, 319
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstMAI GTCTC 2 cut(s) 239, 250
BstXI CCANNNNNNTGG 1 cut(s) 73
BtgI CCRYGG 2 cut(s) 238, 319
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CciI TCATGA 1 cut(s) 172
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 153, 198
CviAII CATG 5 cut(s) 173, 184, 218, 239, 320
CviJI RGCY 1 cut(s) 16
CviKI_1 RGCY 1 cut(s) 16
CviQI GTAC 2 cut(s) 153, 198
DdeI CTNAG 5 cut(s) 33, 54, 146, 157, 263
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 2 cut(s) 238, 319
Eco47III AGCGCT 1 cut(s) 270
EcoRI GAATTC 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 238, 319
ErhI CCWWGG 2 cut(s) 238, 319
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 5 cut(s) 176, 187, 221, 242, 323
FaiI YATR 9 cut(s) 102, 174, 185, 219, 240, 279, 285, 287, 321
FatI CATG 5 cut(s) 172, 183, 217, 238, 319
GlaI GCGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 272
HhaI GCGC 1 cut(s) 271
Hin1II CATG 5 cut(s) 176, 187, 221, 242, 323
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 1 cut(s) 211
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 3 cut(s) 27, 200, 223
Hpy188I TCNGA 2 cut(s) 160, 266
Hpy188III TCNNGA 2 cut(s) 81, 173
Hpy8I GTNNAC 3 cut(s) 27, 200, 223
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 5 cut(s) 33, 54, 146, 157, 263
Hsp92II CATG 5 cut(s) 176, 187, 221, 242, 323
HspAI GCGC 1 cut(s) 269
KpnI GGTACC 1 cut(s) 156
LpnPI CCDG 3 cut(s) 7, 66, 193
MluCI AATT 3 cut(s) 39, 168, 179
MnlI CCTC 3 cut(s) 77, 166, 272
NcoI CCATGG 2 cut(s) 238, 319
NlaIII CATG 5 cut(s) 176, 187, 221, 242, 323
NlaIV GGNNCC 1 cut(s) 154
PagI TCATGA 1 cut(s) 172
PfeI GAWTC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 154
RsaI GTAC 2 cut(s) 154, 199
RsaNI GTAC 2 cut(s) 153, 198
SetI ASST 5 cut(s) 26, 109, 144, 158, 264
Sse9I AATT 3 cut(s) 39, 168, 179
SsiI CCGC 1 cut(s) 188
StyI CCWWGG 2 cut(s) 238, 319
TasI AATT 3 cut(s) 39, 168, 179
TatI WGTACW 1 cut(s) 197
TfiI GAWTC 1 cut(s) 211
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 161, 172, 203
TspRI CASTG 1 cut(s) 141
XapI RAATTY 2 cut(s) 39, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.