Rroxscaffold_5G00346110
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
16785701 .. 16787471
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346110.1

Sequence Viewer

Length: 1323 bp
ATGTCGACAAATTATACTGTCGTTATCGTTGCCGTTGTCGCCGTTACCGCTATCATTGGCCTTGCCGTTACCGTTGCCGTTGCCGTTGCGAGTTATGGAGATCAACAACTTGCCGCCATTGTTGTATTTATGTTAGTGTTTGTGACGACTGCTATCTTAGTTGTAGCATGGAGGAAAAGTAATCAGAAAGGTAGCAGCTCTGATGATCCAATCTACACTCAGACCAAATTTCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAAATTCGGATCGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTCTATTTAGTAATGGAACGCTTGTGGCAGTGAAGGTTCTAAGGGGTACCTCGGATCACAAGAGAATTGATGAGCAATTCATGGCGGAAGTTAGCACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGAGAGCTTAGAGCACTGGTTTATGAGTATATGTCAAATGGTTCGCTTGATAAGTTTCTTTTCCACGGAAACAGGATGGTAAGATTTGAAAAGCTTCATGACATTGCGGTTGGGACGGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAACGAATAGTCCACTATGATATAAAACCTGAAAATATTCTTTTGGATGTGAATTTCCTCCCCAAAGTTGCTGACTTCGGTTTGGCCAAGCTGATCAACAGGGACAATACTCATATAACAATGACAGGTTGGAGGGGAACTCCTGGTTATCCTGCACCAGAAGTTTGGCTGCGGTTTCCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGATGTTATTTGAGATCATAAGTAGAAGAAGGAACCATAACCTTAATCTTCCAGAGAGCCAAGAATGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGAGAACTAATGGCAGTGTGTGGTATAGAGGAAAAAGATAGAGAGGCAGCAGGGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTATAGGTCTGAGTTGAGGCCTTCAATGAGTGTTGTGGTGAAAATGTTGGAAGGAGAATTTGAGATTCCTAGACCTTCAATTAATCCATTTCAGCACTTGATGCCAGACAATCCTAACATGGCAGCATATAGCACTAGTGCCTTCGACACGGATTCCTCTCAAACAATAATTGGATCTAACATTGTTTGTGAGACTCCCATCATGAAAAAATACGAGATTGAAATAGCGTCTACTTAA

Protein Analysis

440

Amino Acids

49.75

Weight (kDa)

6.87

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 109 - 377 7e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 111 - 308 1.1e-43 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 2 cut(s) 5, 1316
AciI CCGC 5 cut(s) 48, 114, 455, 629, 847
AclWI GGATC 4 cut(s) 200, 317, 432, 1267
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 4 cut(s) 227, 303, 727, 1142
AfaI GTAC 2 cut(s) 418, 878
AfiI CCNNNNNNNGG 1 cut(s) 968
AgsI TTSAA 5 cut(s) 611, 986, 1110, 1164, 1307
AhlI ACTAGT 1 cut(s) 1220
AjnI CCWGG 1 cut(s) 817
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AleI CACNNNNGTG 1 cut(s) 867
AluBI AGCT 7 cut(s) 198, 529, 616, 766, 882, 989, 1070
AluI AGCT 7 cut(s) 198, 529, 616, 766, 882, 989, 1070
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 2 cut(s) 506, 1271
AlwI GGATC 4 cut(s) 200, 317, 432, 1267
AoxI GGCC 3 cut(s) 58, 759, 1103
ApeKI GCWGC 4 cut(s) 195, 844, 1046, 1208
ApoI RAATTY 4 cut(s) 227, 303, 727, 1142
AseI ATTAAT 1 cut(s) 1167
Asp700I GAANNNNTTC 3 cut(s) 615, 711, 957
Asp718I GGTACC 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 319, 1004, 1135
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 4 cut(s) 207, 831, 1058, 1220
BccI CCATC 4 cut(s) 290, 592, 966, 1292
BceAI ACGGC 6 cut(s) 17, 26, 50, 62, 68, 654
BciT130I CCWGG 1 cut(s) 819
BclI TGATCA 1 cut(s) 768
BcoDI GTCTC 2 cut(s) 506, 1271
BcuI ACTAGT 1 cut(s) 1220
BfaI CTAG 4 cut(s) 642, 998, 1155, 1221
BisI GCNGC 5 cut(s) 114, 196, 845, 1047, 1209
BlsI GCNGC 5 cut(s) 115, 197, 846, 1048, 1210
Bme1390I CCNGG 1 cut(s) 819
BmiI GGNNCC 2 cut(s) 418, 923
BmrFI CCNGG 1 cut(s) 819
BmsI GCATC 1 cut(s) 1176
BplI GAGNNNNNCTC 2 cut(s) 799, 831
BsaJI CCNNGG 4 cut(s) 420, 505, 586, 962
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 968
Bse1I ACTGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 4 cut(s) 420, 505, 586, 962
BseGI GGATG 3 cut(s) 603, 727, 977
BseLI CCNNNNNNNGG 1 cut(s) 968
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 2 cut(s) 233, 1086
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 4 cut(s) 207, 831, 1058, 1220
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 3 cut(s) 60, 761, 1105
BshNI GGYRCC 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 538
BslFI GGGAC 2 cut(s) 649, 791
BslI CCNNNNNNNGG 1 cut(s) 968
BsmAI GTCTC 2 cut(s) 506, 1271
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 2 cut(s) 649, 791
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 3 cut(s) 60, 761, 1105
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 5 cut(s) 48, 114, 455, 629, 847
BspANI GGCC 3 cut(s) 60, 761, 1105
BspCNI CTCAG 2 cut(s) 232, 1087
BspHI TCATGA 2 cut(s) 619, 1287
BspLI GGNNCC 2 cut(s) 418, 923
BspPI GGATC 4 cut(s) 200, 317, 432, 1267
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 624
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 1 cut(s) 543
BssECI CCNNGG 4 cut(s) 420, 505, 586, 962
BssMI GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
BssT1I CCWWGG 2 cut(s) 505, 962
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 2 cut(s) 19, 73
BstAPI GCANNNNNTGC 1 cut(s) 1186
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 1 cut(s) 674
BstDEI CTNAG 5 cut(s) 157, 219, 410, 530, 1095
BstDSI CCRYGG 2 cut(s) 505, 586
BstF5I GGATG 3 cut(s) 603, 727, 977
BstKTI GATC 7 cut(s) 103, 208, 312, 427, 771, 906, 1262
BstMAI GTCTC 2 cut(s) 506, 1271
BstMBI GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 471, 1186
BstNI CCWGG 1 cut(s) 819
BstSCI CCNGG 1 cut(s) 817
BstV1I GCAGC 4 cut(s) 207, 831, 1058, 1220
BstX2I RGATCY 1 cut(s) 1259
BstXI CCANNNNNNTGG 2 cut(s) 337, 840
BstYI RGATCY 1 cut(s) 1259
BsuRI GGCC 3 cut(s) 60, 761, 1105
BtgI CCRYGG 2 cut(s) 505, 586
BtsCI GGATG 3 cut(s) 603, 727, 977
BtsI GCAGTG 2 cut(s) 405, 1020
BtsIMutI CAGTG 3 cut(s) 405, 536, 1020
Cac8I GCNNGC 1 cut(s) 674
CciI TCATGA 2 cut(s) 619, 1287
CseI GACGC 1 cut(s) 1302
Csp6I GTAC 2 cut(s) 417, 877
CviAII CATG 7 cut(s) 168, 451, 485, 506, 620, 1204, 1288
CviQI GTAC 2 cut(s) 417, 877
DdeI CTNAG 5 cut(s) 157, 219, 410, 530, 1095
DpnI GATC 7 cut(s) 102, 207, 311, 426, 770, 905, 1261
DpnII GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
EaeI YGGCCR 1 cut(s) 759
EciI GGCGGA 1 cut(s) 470
Eco130I CCWWGG 2 cut(s) 505, 962
Eco147I AGGCCT 1 cut(s) 1105
EcoRII CCWGG 1 cut(s) 817
EcoT14I CCWWGG 2 cut(s) 505, 962
ErhI CCWWGG 2 cut(s) 505, 962
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 7 cut(s) 171, 454, 488, 509, 623, 1207, 1291
FaqI GGGAC 2 cut(s) 649, 791
FatI CATG 7 cut(s) 167, 450, 484, 505, 619, 1203, 1287
FbaI TGATCA 1 cut(s) 768
FblI GTMKAC 2 cut(s) 5, 1316
Fnu4HI GCNGC 5 cut(s) 114, 196, 845, 1047, 1209
FokI GGATG 3 cut(s) 610, 734, 984
Fsp4HI GCNGC 5 cut(s) 114, 196, 845, 1047, 1209
FspBI CTAG 4 cut(s) 642, 998, 1155, 1221
GluI GCNGC 5 cut(s) 114, 196, 845, 1047, 1209
HaeIII GGCC 3 cut(s) 60, 761, 1105
HgaI GACGC 1 cut(s) 1302
Hin1II CATG 7 cut(s) 171, 454, 488, 509, 623, 1207, 1291
HincII GTYRAC 2 cut(s) 6, 490
HindII GTYRAC 2 cut(s) 6, 490
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 4 cut(s) 478, 1150, 1238, 1279
HphI GGTGA 3 cut(s) 319, 1004, 1135
Hpy166II GTNNAC 7 cut(s) 6, 291, 490, 688, 877, 995, 1317
Hpy188I TCNGA 7 cut(s) 186, 202, 222, 234, 309, 424, 1096
Hpy188III TCNNGA 4 cut(s) 345, 620, 941, 1288
Hpy8I GTNNAC 7 cut(s) 6, 291, 490, 688, 877, 995, 1317
HpyAV CCTTC 6 cut(s) 397, 912, 1116, 1130, 1170, 1237
HpyCH4III ACNGT 2 cut(s) 19, 73
HpyCH4V TGCA 2 cut(s) 661, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 471, 1186
HpyF3I CTNAG 5 cut(s) 157, 219, 410, 530, 1095
Hsp92II CATG 7 cut(s) 171, 454, 488, 509, 623, 1207, 1291
KpnI GGTACC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
Lsp1109I GCAGC 4 cut(s) 207, 831, 1058, 1220
LweI GCATC 1 cut(s) 1176
MaeI CTAG 4 cut(s) 642, 998, 1155, 1221
MaeIII GTNAC 3 cut(s) 43, 67, 142
MalI GATC 7 cut(s) 102, 207, 311, 426, 770, 905, 1261
MboI GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
MboII GAAGA 4 cut(s) 677, 927, 929, 988
MflI RGATCY 1 cut(s) 1259
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 761
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 1 cut(s) 1273
MmeI TCCRAC 3 cut(s) 257, 785, 1113
Mox20I TGGCCA 1 cut(s) 761
MroXI GAANNNNTTC 3 cut(s) 615, 711, 957
MscI TGGCCA 1 cut(s) 761
MseI TTAA 4 cut(s) 933, 1061, 1167, 1321
MslI CAYNNNNRTG 1 cut(s) 867
Msp20I TGGCCA 1 cut(s) 761
MspR9I CCNGG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 1 cut(s) 819
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 471, 1186
NcoI CCATGG 1 cut(s) 505
NdeII GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
NlaIII CATG 7 cut(s) 171, 454, 488, 509, 623, 1207, 1291
NlaIV GGNNCC 2 cut(s) 418, 923
NmuCI GTSAC 1 cut(s) 142
OliI CACNNNNGTG 1 cut(s) 867
PagI TCATGA 2 cut(s) 619, 1287
PceI AGGCCT 1 cut(s) 1105
PctI GAATGC 1 cut(s) 674
PdmI GAANNNNTTC 3 cut(s) 615, 711, 957
PfeI GAWTC 3 cut(s) 478, 1150, 1238
PkrI GCNGC 5 cut(s) 115, 197, 846, 1048, 1210
PleI GAGTC 1 cut(s) 1273
PpsI GAGTC 1 cut(s) 1273
PshBI ATTAAT 1 cut(s) 1167
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 817
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 2 cut(s) 418, 923
PsuI RGATCY 1 cut(s) 1259
RsaI GTAC 2 cut(s) 418, 878
RsaNI GTAC 2 cut(s) 417, 877
RseI CAYNNNNRTG 1 cut(s) 867
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 933, 1061, 1167, 1321
SatI GCNGC 5 cut(s) 114, 196, 845, 1047, 1209
Sau3AI GATC 7 cut(s) 100, 205, 309, 424, 768, 903, 1259
SchI GAGTC 1 cut(s) 1273
ScrFI CCNGG 1 cut(s) 819
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 1 cut(s) 1176
SmiMI CAYNNNNRTG 1 cut(s) 867
SpeI ACTAGT 1 cut(s) 1220
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 5 cut(s) 48, 114, 455, 629, 847
SspI AATATT 1 cut(s) 712
SspMI CTAG 4 cut(s) 642, 998, 1155, 1221
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 1 cut(s) 817
StyI CCWWGG 2 cut(s) 505, 962
TaaI ACNGT 2 cut(s) 19, 73
TaqI TCGA 2 cut(s) 5, 1230
TatI WGTACW 1 cut(s) 876
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 3 cut(s) 478, 1150, 1238
Tru1I TTAA 4 cut(s) 933, 1061, 1167, 1321
Tru9I TTAA 4 cut(s) 933, 1061, 1167, 1321
TscAI CASTG 3 cut(s) 405, 543, 1020
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 4 cut(s) 195, 844, 1046, 1208
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 439, 470, 608, 1304
TspGWI ACGGA 2 cut(s) 603, 1250
TspRI CASTG 3 cut(s) 405, 543, 1020
VspI ATTAAT 1 cut(s) 1167
XapI RAATTY 4 cut(s) 227, 303, 727, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 969
XmiI GTMKAC 2 cut(s) 5, 1316
XmnI GAANNNNTTC 3 cut(s) 615, 711, 957
XspI CTAG 4 cut(s) 642, 998, 1155, 1221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.