Rh4BG101300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
17455235 .. 17471818
16584 bp
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UTR
Exon/CDS
Intron
Rh4BG101300.1

Sequence Viewer

Length: 291 bp
ATGGATACCCTGAACATAGACCGGCCTCTCCTTGATTCTTTTCTAGTGGCCGCCTCTGTGGCGACTGCTATGTTAGTTGCAGCATGCAGGAAACGTAATCAGAAAGGTAGCAGCTCTGATGATCCAATCTACACTCAGACCAAATTTCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGAGAAGGCAAAGAGTGGAGAAGAAAGATTGTAACACCCTGACCCCGAAGCCTTGTCTCTCTCTTACTCCACCTATCCTCTATAGATAG

Protein Analysis

96

Amino Acids

10.97

Weight (kDa)

9.41

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 143
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 23, 48
ApeKI GCWGC 2 cut(s) 80, 111
ApoI RAATTY 1 cut(s) 143
BbvI GCAGC 2 cut(s) 92, 123
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 3 cut(s) 51, 81, 112
BlsI GCNGC 3 cut(s) 52, 82, 113
Bse118I RCCGGY 1 cut(s) 21
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 92, 123
BshFI GGCC 2 cut(s) 25, 50
BsiSI CCGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 2 cut(s) 25, 50
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 25, 50
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 21
BssMI GATC 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 1 cut(s) 135
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 283
BstV1I GCAGC 2 cut(s) 92, 123
BsuRI GGCC 2 cut(s) 25, 50
Cac8I GCNNGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 21
CviAII CATG 1 cut(s) 84
CviJI RGCY 5 cut(s) 25, 50, 114, 196, 253
CviKI_1 RGCY 5 cut(s) 25, 50, 114, 196, 253
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 48
FaeI CATG 1 cut(s) 87
FaiI YATR 5 cut(s) 17, 71, 85, 182, 285
FatI CATG 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 51, 81, 112
Fsp4HI GCNGC 3 cut(s) 51, 81, 112
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 51, 81, 112
HaeIII GGCC 2 cut(s) 25, 50
HapII CCGG 1 cut(s) 22
Hin1II CATG 1 cut(s) 87
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 102, 118, 138, 150
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 201
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 80, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 1 cut(s) 87
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 23, 35, 73, 187, 254
Lsp1109I GCAGC 2 cut(s) 92, 123
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 233
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 235
MluCI AATT 2 cut(s) 143, 166
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 36, 64, 290
MspI CCGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 87
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 3 cut(s) 52, 82, 113
SatI GCNGC 3 cut(s) 51, 81, 112
Sau3AI GATC 1 cut(s) 121
SetI ASST 4 cut(s) 97, 109, 116, 277
SfcI CTRYAG 1 cut(s) 283
SphI GCATGC 1 cut(s) 87
Sse9I AATT 2 cut(s) 143, 166
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 44
TaiI ACGT 1 cut(s) 97
TasI AATT 2 cut(s) 143, 166
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 1 cut(s) 35
TseI GCWGC 2 cut(s) 80, 111
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.