Rroxscaffold_5G00346130
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
16837266 .. 16838777
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346130.1

Sequence Viewer

Length: 1176 bp
ATGTCGACTGAAGTTGTTACTGTTGTAGCATTAGTAGTTGTCTCTGTGATGATTGCTATCATAGTTGTATATAGGAGATATATTCGGGAACGTAGCAGCTCTGATGATCCAGTACTCTTACATGATCCAAGCTTTTCGACACTCACAATGGACAATTTTCTAAATGATTTAGAAAGAGAGAGGCCCATGAGGTTTACTTCTCAACAACTTCAGATTGCAACTGATAACTTCACCAACTTGCTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGAAAATTTAGTAATGGAACCCTTGTGGCAGTGAAGGTCCTAAATGGTACCTCGGACAAGGGAATTGAAGAACAATTCATGGCGGAAGTTAGAACCCTTGGCAGGATTCATCATATCAACTTGGTTGGTCTTTATGGTTTCTGCTTTGAGAGACACTTCAGAGCAATTGTTTATGAGTATATGTCAAATGGTTCACTTGATAAGTTTCTTTTCCATGGAAACAAGATTTTAGGATTCGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTGAACTTCTTTCCTAAAGTAGCTGATTTTGGTTTGGCCAAGCTGTTCAATAGAGATAAGACTCATATATCAATGACCGGGTGGAGGGGAACTCCTGGTTATGCTGCACCAGAAGTTTGGCTGCAGTGCCCTATAACCCACAAGTGTGATGTGTACAGCTTTGGAATGCTATTATTTGAGATCATAGGCAGAAGAAGGAACCTAGACCTCAATCTTCCGGAGGGTCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGAGAACTAGGAGAGCTAATGCTAGTTTGTGGCATAGAGGAGAAAGACAGAGAGGCAACAGAGAGAATGTTAAAGGTAGCTATCTGCTGTGTTCAGTATAGGCCCGAGTTGAGGCCTTTAATGAGTGCTGTGGTGAAAATGTTGCAAGGAGAAATTGAGATTCCTAGACCTTCAATTAACCCACTTCAGCACTCGTTGCCAGGCACTCCTGTCATGGTATCATATAGCACTAGTGTCTTCGACACGGATTCCTCTCGAACAATAACTGGTGTTGAAGGATGTTGA

Protein Analysis

391

Amino Acids

44.32

Weight (kDa)

6.28

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 77 - 345 1.3e-46 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 79 - 273 5.4e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 841
AciI CCGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 101, 119
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 4 cut(s) 30, 194, 415, 1061
AfaI GTAC 3 cut(s) 114, 322, 779
AfiI CCNNNNNNNGG 4 cut(s) 375, 708, 869, 1002
AgsI TTSAA 5 cut(s) 341, 673, 887, 1065, 1166
AhlI ACTAGT 1 cut(s) 1121
AjnI CCWGG 2 cut(s) 718, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AleI CACNNNNGTG 1 cut(s) 768
Alw26I GTCTC 2 cut(s) 46, 418
AlwI GGATC 2 cut(s) 101, 119
Ama87I CYCGRG 1 cut(s) 995
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 4 cut(s) 182, 660, 992, 1004
ApeKI GCWGC 4 cut(s) 96, 577, 728, 745
ApoI RAATTY 1 cut(s) 278
Asp700I GAANNNNTTC 2 cut(s) 516, 612
Asp718I GGTACC 1 cut(s) 320
AspS9I GGNCC 3 cut(s) 183, 310, 993
AsuC2I CCSGG 1 cut(s) 703
AsuHPI GGTGA 2 cut(s) 223, 1036
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 995
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 755
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 1120
BbvI GCAGC 4 cut(s) 108, 589, 715, 732
BccI CCATC 1 cut(s) 867
BciT130I CCWGG 2 cut(s) 720, 1092
BcnI CCSGG 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 46, 418
BcuI ACTAGT 1 cut(s) 1121
BfaI CTAG 6 cut(s) 543, 827, 899, 914, 1056, 1122
BfmI CTRYAG 1 cut(s) 746
BisI GCNGC 4 cut(s) 97, 578, 729, 746
BlsI GCNGC 4 cut(s) 98, 579, 730, 747
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 3 cut(s) 703, 720, 1092
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 995
BmgT120I GGNCC 3 cut(s) 183, 310, 993
BmiI GGNNCC 3 cut(s) 292, 322, 824
BmrFI CCNGG 3 cut(s) 703, 720, 1092
BpiI GAAGAC 1 cut(s) 1120
BplI GAGNNNNNCTC 2 cut(s) 700, 732
BpmI CTGGAG 1 cut(s) 912
Bpu14I TTCGAA 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 324, 370, 487, 863
BsaWI WCCGGW 1 cut(s) 841
Bsc4I CCNNNNNNNGG 4 cut(s) 375, 708, 869, 1002
Bse1I ACTGG 3 cut(s) 110, 860, 1162
Bse8I GATNNNNATC 1 cut(s) 56
BseAI TCCGGA 1 cut(s) 841
BseBI CCWGG 2 cut(s) 720, 1092
BseDI CCNNGG 4 cut(s) 324, 370, 487, 863
BseGI GGATG 3 cut(s) 628, 878, 1175
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 4 cut(s) 375, 708, 869, 1002
BseNI ACTGG 3 cut(s) 110, 860, 1162
BseRI GAGGAG 1 cut(s) 944
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 4 cut(s) 108, 589, 715, 732
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 4 cut(s) 184, 662, 994, 1006
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 2 cut(s) 702, 842
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 4 cut(s) 375, 708, 869, 1002
BsmAI GTCTC 2 cut(s) 46, 418
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 2 cut(s) 575, 795
BsnI GGCC 4 cut(s) 184, 662, 994, 1006
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 755
Bsp13I TCCGGA 1 cut(s) 841
Bsp1407I TGTACA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 106, 124, 804
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 356
BspANI GGCC 4 cut(s) 184, 662, 994, 1006
BspEI TCCGGA 1 cut(s) 841
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 3 cut(s) 292, 322, 824
BspMAI CTGCAG 1 cut(s) 750
BspPI GGATC 2 cut(s) 101, 119
BspT104I TTCGAA 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 320
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 3 cut(s) 110, 860, 1162
BssECI CCNNGG 4 cut(s) 324, 370, 487, 863
BssMI GATC 3 cut(s) 106, 124, 804
BssT1I CCWWGG 3 cut(s) 370, 487, 863
Bst2UI CCWGG 2 cut(s) 720, 1092
Bst4CI ACNGT 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 1087
BstAUI TGTACA 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 575
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 3 cut(s) 628, 878, 1175
BstKTI GATC 3 cut(s) 109, 127, 807
BstMAI GTCTC 2 cut(s) 46, 418
BstMBI GATC 3 cut(s) 106, 124, 804
BstMWI GCNNNNNNNGC 1 cut(s) 1087
BstNI CCWGG 2 cut(s) 720, 1092
BstSCI CCNGG 3 cut(s) 701, 718, 1090
BstSFI CTRYAG 1 cut(s) 746
BstSLI GKGCMC 1 cut(s) 755
BstV1I GCAGC 4 cut(s) 108, 589, 715, 732
BstV2I GAAGAC 1 cut(s) 1120
BstXI CCANNNNNNTGG 2 cut(s) 241, 741
BsuRI GGCC 4 cut(s) 184, 662, 994, 1006
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 3 cut(s) 628, 878, 1175
BtsI GCAGTG 2 cut(s) 309, 755
BtsIMutI CAGTG 2 cut(s) 309, 755
Cac8I GCNNGC 1 cut(s) 575
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 3 cut(s) 183, 310, 993
Csp6I GTAC 3 cut(s) 113, 321, 778
CviAII CATG 6 cut(s) 122, 187, 352, 488, 521, 1105
CviQI GTAC 3 cut(s) 113, 321, 778
DpnI GATC 3 cut(s) 108, 126, 806
DpnII GATC 3 cut(s) 106, 124, 804
EaeI YGGCCR 1 cut(s) 660
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 3 cut(s) 370, 487, 863
Eco147I AGGCCT 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 4 cut(s) 30, 194, 415, 1061
Eco88I CYCGRG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 718, 1090
EcoT14I CCWWGG 3 cut(s) 370, 487, 863
ErhI CCWWGG 3 cut(s) 370, 487, 863
FaeI CATG 6 cut(s) 125, 190, 355, 491, 524, 1108
FaqI GGGAC 1 cut(s) 550
FatI CATG 6 cut(s) 121, 186, 351, 487, 520, 1104
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 97, 578, 729, 746
FokI GGATG 2 cut(s) 635, 885
Fsp4HI GCNGC 4 cut(s) 97, 578, 729, 746
FspBI CTAG 6 cut(s) 543, 827, 899, 914, 1056, 1122
GluI GCNGC 4 cut(s) 97, 578, 729, 746
GsaI CCCAGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 912
HaeIII GGCC 4 cut(s) 184, 662, 994, 1006
HapII CCGG 2 cut(s) 702, 842
Hin1II CATG 6 cut(s) 125, 190, 355, 491, 524, 1108
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 2 cut(s) 130, 515
HinfI GANTC 5 cut(s) 379, 507, 685, 1051, 1139
HpaII CCGG 2 cut(s) 702, 842
HphI GGTGA 2 cut(s) 223, 1036
Hpy166II GTNNAC 6 cut(s) 6, 195, 467, 589, 628, 778
Hpy188I TCNGA 4 cut(s) 103, 213, 328, 434
Hpy188III TCNNGA 6 cut(s) 86, 249, 521, 842, 851, 1146
Hpy8I GTNNAC 6 cut(s) 6, 195, 467, 589, 628, 778
HpyAV CCTTC 4 cut(s) 301, 813, 1071, 1160
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 6 cut(s) 218, 530, 562, 731, 748, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 1087
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 6 cut(s) 125, 190, 355, 491, 524, 1108
Kpn2I TCCGGA 1 cut(s) 841
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 106, 124, 804
Lsp1109I GCAGC 4 cut(s) 108, 589, 715, 732
MaeI CTAG 6 cut(s) 543, 827, 899, 914, 1056, 1122
MaeII ACGT 1 cut(s) 91
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 108, 126, 806
MboI GATC 3 cut(s) 106, 124, 804
MboII GAAGA 6 cut(s) 353, 578, 828, 830, 889, 1120
MfeI CAATTG 1 cut(s) 438
MhlI GDGCHC 1 cut(s) 755
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 8 cut(s) 154, 278, 336, 347, 438, 525, 1044, 1065
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 1 cut(s) 679
Mox20I TGGCCA 1 cut(s) 662
MroI TCCGGA 1 cut(s) 841
MroXI GAANNNNTTC 2 cut(s) 516, 612
MscI TGGCCA 1 cut(s) 662
MseI TTAA 3 cut(s) 962, 1010, 1068
MslI CAYNNNNRTG 1 cut(s) 768
Msp20I TGGCCA 1 cut(s) 662
MspI CCGG 2 cut(s) 702, 842
MspR9I CCNGG 3 cut(s) 703, 720, 1092
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 2 cut(s) 575, 795
MvaI CCWGG 2 cut(s) 720, 1092
MwoI GCNNNNNNNGC 1 cut(s) 1087
NciI CCSGG 1 cut(s) 703
NcoI CCATGG 1 cut(s) 487
NdeII GATC 3 cut(s) 106, 124, 804
NlaIII CATG 6 cut(s) 125, 190, 355, 491, 524, 1108
NlaIV GGNNCC 3 cut(s) 292, 322, 824
NspV TTCGAA 1 cut(s) 510
OliI CACNNNNGTG 1 cut(s) 768
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 1006
PctI GAATGC 2 cut(s) 575, 795
PdmI GAANNNNTTC 2 cut(s) 516, 612
PfeI GAWTC 4 cut(s) 379, 507, 1051, 1139
PkrI GCNGC 4 cut(s) 98, 579, 730, 747
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PpuMI RGGWCCY 1 cut(s) 310
PsiI TTATAA 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 2 cut(s) 718, 1090
PspFI CCCAGC 1 cut(s) 241
PspGI CCWGG 2 cut(s) 718, 1090
PspN4I GGNNCC 3 cut(s) 292, 322, 824
PspPI GGNCC 3 cut(s) 183, 310, 993
PspPPI RGGWCCY 1 cut(s) 310
PstI CTGCAG 1 cut(s) 750
RsaI GTAC 3 cut(s) 114, 322, 779
RsaNI GTAC 3 cut(s) 113, 321, 778
RseI CAYNNNNRTG 1 cut(s) 768
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 962, 1010, 1068
SatI GCNGC 4 cut(s) 97, 578, 729, 746
Sau3AI GATC 3 cut(s) 106, 124, 804
Sau96I GGNCC 3 cut(s) 183, 310, 993
ScaI AGTACT 1 cut(s) 114
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 3 cut(s) 703, 720, 1092
SduI GDGCHC 1 cut(s) 755
SfcI CTRYAG 1 cut(s) 746
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 768
SpeI ACTAGT 1 cut(s) 1121
Sse9I AATT 8 cut(s) 154, 278, 336, 347, 438, 525, 1044, 1065
SseBI AGGCCT 1 cut(s) 1006
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 613
SspMI CTAG 6 cut(s) 543, 827, 899, 914, 1056, 1122
StuI AGGCCT 1 cut(s) 1006
StyD4I CCNGG 3 cut(s) 701, 718, 1090
StyI CCWWGG 3 cut(s) 370, 487, 863
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 94
TaqI TCGA 5 cut(s) 5, 137, 510, 1131, 1147
TasI AATT 8 cut(s) 154, 278, 336, 347, 438, 525, 1044, 1065
TatI WGTACW 2 cut(s) 112, 777
TfiI GAWTC 4 cut(s) 379, 507, 1051, 1139
Tru1I TTAA 3 cut(s) 962, 1010, 1068
Tru9I TTAA 3 cut(s) 962, 1010, 1068
TscAI CASTG 2 cut(s) 309, 755
TseI GCWGC 4 cut(s) 96, 577, 728, 745
TspDTI ATGAA 4 cut(s) 340, 371, 509, 537
TspGWI ACGGA 1 cut(s) 1151
TspRI CASTG 2 cut(s) 309, 755
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 516, 612
XspI CTAG 6 cut(s) 543, 827, 899, 914, 1056, 1122
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.