Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

26600115 .. 26600684

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1250700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCAGAAAATATTCTTTTGGATGCAAACTTCTTTCCAAAAGTAGGTTTGGCCAAGTTGTGTAACAGGGAAAATACTCATATAACCCTGACAGGTGGGAGAGGGACTCCGGGTTATGCTGCACCGGAGGTTTGGCTGAGGTTTCCTATAACACACAAATGTGATGTGCATAGCTTTGGAATGCTATTGTTTGAGATCATAGGAAGGAGAAGGAATCTCGATGTCAATATTCAAGATAGCCTAGATTGGTTTCCGAGGTGGGAGAAAGATAAAGAGAGGGCAGAGAGAATGGTAAAGGTTGCTCTGGTGTGTGTACGGTATATGCCCGAGGCAAGGCCTTTGATGAGTGTCATCGTTAAAATGTTGGAAGGTGAAATTGAGATTCCTACACCTTCAACTAACCCTTTCCAGCACTTGATGTCGGACACTCCGTACCCTACTGCACCTAACTATGATACTTCAAATCCAAGAGACAGTACCGCCAGTGAGTATTCTTCGGGTCCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

170

Amino Acids

19.21

Weight (kDa)

6.09

Isoelectric Point (pI)

66.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 114	4.9e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 122	1.2e-09	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	3 cut(s)	315, 434, 478
AfiI	CCNNNNNNNGG	2 cut(s)	44, 333
AgsI	TTSAA	3 cut(s)	233, 396, 462
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	2 cut(s)	51, 335
ApeKI	GCWGC	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	383
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	53
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	254, 327
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 333
Bse1I	ACTGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	254, 327
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	44, 333
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	2 cut(s)	105, 426
BshFI	GGCC	2 cut(s)	53, 337
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	110, 125
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	44, 333
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	53, 337
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	480
BspANI	GGCC	2 cut(s)	53, 337
BspCNI	CTCAG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	2 cut(s)	254, 327
BssMI	GATC	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	318, 476
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	53, 337
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	3 cut(s)	314, 433, 477
CviJI	RGCY	5 cut(s)	53, 136, 174, 240, 337
CviKI_1	RGCY	5 cut(s)	53, 136, 174, 240, 337
CviQI	GTAC	3 cut(s)	314, 433, 477
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	500
FaiI	YATR	9 cut(s)	81, 83, 117, 149, 171, 200, 321, 323, 453
FaqI	GGGAC	1 cut(s)	118
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	242
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	53, 337
HapII	CCGG	2 cut(s)	110, 125
HinfI	GANTC	3 cut(s)	106, 214, 382
HpaII	CCGG	2 cut(s)	110, 125
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	2 cut(s)	255, 424
Hpy188III	TCNNGA	2 cut(s)	218, 233
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	4 cut(s)	198, 204, 362, 402
HpyCH4III	ACNGT	2 cut(s)	318, 476
HpyCH4V	TGCA	4 cut(s)	26, 122, 169, 443
HpyF3I	CTNAG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	195
LpnPI	CCDG	9 cut(s)	18, 52, 78, 101, 123, 138, 290, 422, 496
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	345, 402
MnlI	CCTC	6 cut(s)	95, 121, 132, 249, 270, 322
Mox20I	TGGCCA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	2 cut(s)	357, 508
MslI	CAYNNNNRTG	2 cut(s)	157, 159
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	110, 125
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	214, 382
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	501
PspPI	GGNCC	1 cut(s)	500
PspPPI	RGGWCCY	1 cut(s)	500
RsaI	GTAC	3 cut(s)	315, 434, 478
RsaNI	GTAC	3 cut(s)	314, 433, 477
RseI	CAYNNNNRTG	2 cut(s)	157, 159
SaqAI	TTAA	2 cut(s)	357, 508
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	13
SinI	GGWCC	1 cut(s)	500
SmiMI	CAYNNNNRTG	2 cut(s)	157, 159
Sse9I	AATT	1 cut(s)	375
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	480
SspI	AATATT	2 cut(s)	13, 229
SspMI	CTAG	1 cut(s)	242
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	318, 476
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	214, 382
Tru1I	TTAA	2 cut(s)	357, 508
Tru9I	TTAA	2 cut(s)	357, 508
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	1 cut(s)	119
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.