RLG00000009146
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
47480821 .. 47481664
844 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009146

Sequence Viewer

Length: 693 bp
ATGTCGAGAAATTATACTGCCGTTGCTGTTGTCGTTGCCGCTGCCATAGCCGTTGCGTTGCCGAGTTATGGAGATCAAGGAGTTGCCATTGTTGGAGTGTTAGGATGGAGGAAACGTAATCAGAAAGGTAGCAGCTCTGATGATCCAATCTACACTCAGACCAAAAAAAAAAAAAAAAAGGGCTTTCCGACACTCACAACGGACAGTTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCAACAAATTCGGATTGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTGTATTTAGTAATGGAACGCTTGTGGCAGTGAAGGTTCTAAGGGGTACCTCAGACAAGAGAATTGATGAGCAATTCATGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGACACCTCAGAGCGCTTGTTTATGAGTACATGTCAAATGGTTCGCTTGACAAGTTTCTTTTCCATGGAAACAAGATTTTTAGGATTGAAAAGCTTCATGAAATTGCAGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGCCAGACGCGAATAGTCCACTACAATATAAAACCTGAAAATATTCTTTTTGTTGTAAATAGTTATGGCTAA

Protein Analysis

231

Amino Acids

25.76

Weight (kDa)

9.69

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 94 - 224 1.6e-26 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 96 - 225 4.7e-25 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 1 cut(s) 631
AciI CCGC 2 cut(s) 39, 407
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 3 cut(s) 373, 418, 503
AfeI AGCGCT 1 cut(s) 489
AfiI CCNNNNNNNGG 1 cut(s) 68
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 1 cut(s) 563
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 3 cut(s) 135, 568, 593
AluI AGCT 3 cut(s) 135, 568, 593
Alw26I GTCTC 2 cut(s) 458, 469
AlwI GGATC 1 cut(s) 137
Aor51HI AGCGCT 1 cut(s) 489
ApeKI GCWGC 2 cut(s) 41, 132
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 567, 663
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 490
AsuHPI GGTGA 1 cut(s) 274
BanI GGYRCC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 28, 144
BccI CCATC 2 cut(s) 99, 245
BceAI ACGGC 2 cut(s) 5, 35
BcoDI GTCTC 2 cut(s) 458, 469
BfaI CTAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 491
BisI GCNGC 3 cut(s) 39, 42, 133
BlsI GCNGC 3 cut(s) 40, 43, 134
BmiI GGNNCC 1 cut(s) 373
BsaJI CCNNGG 2 cut(s) 457, 538
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 457, 538
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 3 cut(s) 170, 390, 496
BseXI GCAGC 2 cut(s) 28, 144
Bsh1236I CGCG 1 cut(s) 631
BshNI GGYRCC 1 cut(s) 371
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 458, 469
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 626
Bsp143I GATC 2 cut(s) 73, 142
Bsp19I CCATGG 2 cut(s) 457, 538
BspACI CCGC 2 cut(s) 39, 407
BspCNI CTCAG 3 cut(s) 169, 389, 495
BspFNI CGCG 1 cut(s) 631
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 373
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 457, 538
BssMI GATC 2 cut(s) 73, 142
BssT1I CCWWGG 2 cut(s) 457, 538
Bst4CI ACNGT 1 cut(s) 206
BstDEI CTNAG 4 cut(s) 156, 365, 376, 482
BstDSI CCRYGG 2 cut(s) 457, 538
BstF5I GGATG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 631
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 2 cut(s) 76, 145
BstMAI GTCTC 2 cut(s) 458, 469
BstMBI GATC 2 cut(s) 73, 142
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 508
BstUI CGCG 1 cut(s) 631
BstV1I GCAGC 2 cut(s) 28, 144
BstXI CCANNNNNNTGG 1 cut(s) 292
BtgI CCRYGG 2 cut(s) 457, 538
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 490
CseI GACGC 1 cut(s) 637
Csp6I GTAC 3 cut(s) 372, 417, 502
CviAII CATG 6 cut(s) 403, 437, 458, 505, 539, 572
CviJI RGCY 7 cut(s) 50, 135, 183, 235, 568, 593, 690
CviKI_1 RGCY 7 cut(s) 50, 135, 183, 235, 568, 593, 690
CviQI GTAC 3 cut(s) 372, 417, 502
DdeI CTNAG 4 cut(s) 156, 365, 376, 482
DpnI GATC 2 cut(s) 75, 144
DpnII GATC 2 cut(s) 73, 142
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 2 cut(s) 457, 538
Eco47III AGCGCT 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 457, 538
ErhI CCWWGG 2 cut(s) 457, 538
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 6 cut(s) 406, 440, 461, 508, 542, 575
FaqI GGGAC 1 cut(s) 601
FatI CATG 6 cut(s) 402, 436, 457, 504, 538, 571
Fnu4HI GCNGC 3 cut(s) 39, 42, 133
FokI GGATG 1 cut(s) 117
Fsp4HI GCNGC 3 cut(s) 39, 42, 133
FspBI CTAG 1 cut(s) 594
GlaI GCGC 1 cut(s) 489
GluI GCNGC 3 cut(s) 39, 42, 133
HaeII RGCGCY 1 cut(s) 491
HgaI GACGC 1 cut(s) 637
HhaI GCGC 1 cut(s) 490
Hin1II CATG 6 cut(s) 406, 440, 461, 508, 542, 575
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 1 cut(s) 430
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 4 cut(s) 246, 419, 442, 640
Hpy188I TCNGA 7 cut(s) 123, 139, 159, 189, 264, 379, 485
Hpy188III TCNNGA 3 cut(s) 6, 300, 572
Hpy8I GTNNAC 4 cut(s) 246, 419, 442, 640
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 269, 581, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 4 cut(s) 156, 365, 376, 482
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 6 cut(s) 406, 440, 461, 508, 542, 575
HspAI GCGC 1 cut(s) 488
KpnI GGTACC 1 cut(s) 375
Kzo9I GATC 2 cut(s) 73, 142
LpnPI CCDG 5 cut(s) 226, 285, 412, 638, 669
Lsp1109I GCAGC 2 cut(s) 28, 144
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 115
MalI GATC 2 cut(s) 75, 144
MboI GATC 2 cut(s) 73, 142
MboII GAAGA 1 cut(s) 629
MluCI AATT 5 cut(s) 10, 258, 387, 398, 576
MmeI TCCRAC 2 cut(s) 73, 212
MnlI CCTC 5 cut(s) 102, 296, 385, 491, 590
MroXI GAANNNNTTC 2 cut(s) 567, 663
MspA1I CMGCKG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 626
MvnI CGCG 1 cut(s) 631
MwoI GCNNNNNNNGC 1 cut(s) 47
NcoI CCATGG 2 cut(s) 457, 538
NdeII GATC 2 cut(s) 73, 142
NlaIII CATG 6 cut(s) 406, 440, 461, 508, 542, 575
NlaIV GGNNCC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 87
NspI RCATGY 1 cut(s) 508
PagI TCATGA 1 cut(s) 571
PciI ACATGT 1 cut(s) 504
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 2 cut(s) 567, 663
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 3 cut(s) 40, 43, 134
PscI ACATGT 1 cut(s) 504
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 373
RsaI GTAC 3 cut(s) 373, 418, 503
RsaNI GTAC 3 cut(s) 372, 417, 502
SatI GCNGC 3 cut(s) 39, 42, 133
Sau3AI GATC 2 cut(s) 73, 142
Sse9I AATT 5 cut(s) 10, 258, 387, 398, 576
SsiI CCGC 2 cut(s) 39, 407
SspI AATATT 1 cut(s) 664
SspMI CTAG 1 cut(s) 594
StyI CCWWGG 2 cut(s) 457, 538
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 5
TasI AATT 5 cut(s) 10, 258, 387, 398, 576
TatI WGTACW 2 cut(s) 416, 501
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 430
TscAI CASTG 1 cut(s) 360
TseI GCWGC 2 cut(s) 41, 132
TspDTI ATGAA 4 cut(s) 391, 422, 560, 588
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 360
XapI RAATTY 1 cut(s) 258
XceI RCATGY 1 cut(s) 508
XmnI GAANNNNTTC 2 cut(s) 567, 663
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.