Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Reverse (-)

21951322 .. 21952273

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1220300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCGAGTTACTCGACTCCAGAGTTATCAGACTCATCATCAAATGATGGAGTGGGAGTAGCTATTGTTGTAGTCTTGGTAGTGGTCTTAGTGAAGATTGTTATTGCAGTTGTAGTGTGCAAGAAATGTCAGAAACTCGCAAGAGAGAGAAGTCAGAATGTGAGCTTAGTGCAGATCGTTACCCCAGACTATCGGACGCTCACAATGGAGAAGATCGTTACTCCAGACTTTCGGGCACTCACAATGGACAACTTTATAAATGATATGGAAAGAGAAAAGCCCGCTAGGTTCACTTCTCAACAACTTCGGATTGCGACTGATAACTTCACCAATTTGTTAGGCCAAGGAGTGGCAGTGAAGGTTCTACATGGAAGTTCGGATAAGAGAATCAAGGAACAATTTACGGCGGAAGTTAGTACAATCGGAAGAATACATCACATCAATCTGGTCCGTCTTTATGGTTTCTGCTTTGAGGAACACCTCAGAGCACTTGTTTATGAGTACATGGGAAATGGATCACTTGACAAGTACTTATGTCGTAGCAACACAGTGGTCGTAGGATTTGAACAACTTCATGAGATTGCTGTGGGGACAGAAAGAGGGATCGCTTACTTGCATGAAGAATGCCAACAACGAATTGTCCATTACGACATAAAGCCTGAAAATATTCTTTTGGATGCAAAGTTCTTTCCAAAAAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

235

Amino Acids

26.41

Weight (kDa)

7.05

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	114 - 227	2e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 228	2.9e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	2 cut(s)	282, 407
AclWI	GGATC	2 cut(s)	523, 611
AfaI	GTAC	3 cut(s)	418, 503, 530
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	566
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	3 cut(s)	62, 165, 702
AluI	AGCT	3 cut(s)	62, 165, 702
Alw21I	GWGCWC	1 cut(s)	490
AlwI	GGATC	2 cut(s)	523, 611
AoxI	GGCC	1 cut(s)	340
Asp700I	GAANNNNTTC	2 cut(s)	570, 666
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	490
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	530
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmsI	GCATC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	496
BseSI	GKGCMC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	238, 490
Bsp143I	GATC	4 cut(s)	174, 213, 515, 603
BspACI	CCGC	2 cut(s)	282, 407
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	495
BspHI	TCATGA	1 cut(s)	574
BspPI	GGATC	2 cut(s)	523, 611
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	174, 213, 515, 603
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	88, 166, 482
BstF5I	GGATG	1 cut(s)	682
BstKTI	GATC	4 cut(s)	177, 216, 518, 606
BstMBI	GATC	4 cut(s)	174, 213, 515, 603
BstSLI	GKGCMC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	682
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	360, 555
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	448
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	417, 502, 529
CviAII	CATG	4 cut(s)	368, 505, 575, 617
CviJI	RGCY	6 cut(s)	62, 165, 280, 342, 658, 702
CviKI_1	RGCY	6 cut(s)	62, 165, 280, 342, 658, 702
CviQI	GTAC	3 cut(s)	417, 502, 529
DdeI	CTNAG	3 cut(s)	88, 166, 482
DpnI	GATC	4 cut(s)	176, 215, 517, 605
DpnII	GATC	4 cut(s)	174, 213, 515, 603
EciI	GGCGGA	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	4 cut(s)	371, 508, 578, 620
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	4 cut(s)	367, 504, 574, 616
FauI	CCCGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	689
FspBI	CTAG	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	342
HgaI	GACGC	1 cut(s)	205
Hin1II	CATG	4 cut(s)	371, 508, 578, 620
HinfI	GANTC	3 cut(s)	16, 32, 387
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	8 cut(s)	31, 132, 156, 195, 309, 379, 425, 485
Hpy188III	TCNNGA	3 cut(s)	20, 224, 575
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4V	TGCA	5 cut(s)	107, 120, 172, 616, 680
HpyF3I	CTNAG	3 cut(s)	88, 166, 482
Hsp92II	CATG	4 cut(s)	371, 508, 578, 620
Kzo9I	GATC	4 cut(s)	174, 213, 515, 603
LpnPI	CCDG	5 cut(s)	33, 198, 237, 431, 672
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	8, 178, 217
MalI	GATC	4 cut(s)	176, 215, 517, 605
MboI	GATC	4 cut(s)	174, 213, 515, 603
MboII	GAAGA	4 cut(s)	106, 223, 438, 632
MhlI	GDGCHC	2 cut(s)	238, 490
MluCI	AATT	3 cut(s)	331, 398, 636
MlyI	GAGTC	2 cut(s)	10, 26
MnlI	CCTC	3 cut(s)	466, 491, 593
MroXI	GAANNNNTTC	2 cut(s)	570, 666
Mva1269I	GAATGC	1 cut(s)	629
NdeII	GATC	4 cut(s)	174, 213, 515, 603
NlaIII	CATG	4 cut(s)	371, 508, 578, 620
PagI	TCATGA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PctI	GAATGC	1 cut(s)	629
PdmI	GAANNNNTTC	2 cut(s)	570, 666
PfeI	GAWTC	1 cut(s)	387
PflMI	CCANNNNNTGG	1 cut(s)	349
PleI	GAGTC	2 cut(s)	10, 26
PpsI	GAGTC	2 cut(s)	10, 26
PsiI	TTATAA	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	448
RsaI	GTAC	3 cut(s)	418, 503, 530
RsaNI	GTAC	3 cut(s)	417, 502, 529
Sau3AI	GATC	4 cut(s)	174, 213, 515, 603
Sau96I	GGNCC	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	10, 26
SduI	GDGCHC	2 cut(s)	238, 490
SetI	ASST	6 cut(s)	64, 167, 290, 363, 483, 704
SfaNI	GCATC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	448
Sse9I	AATT	3 cut(s)	331, 398, 636
SsiI	CCGC	2 cut(s)	282, 407
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	5, 14
TasI	AATT	3 cut(s)	331, 398, 636
TatI	WGTACW	3 cut(s)	416, 501, 528
TfiI	GAWTC	1 cut(s)	387
TscAI	CASTG	2 cut(s)	360, 555
TspDTI	ATGAA	2 cut(s)	563, 633
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	360, 555
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	448
XmnI	GAANNNNTTC	2 cut(s)	570, 666
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.