Rmu_sc0003623.1_g000001
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003623.1
Physical Location & Seq
Forward (+)
4381 .. 4904
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003623.1_g000001.1.cds

Sequence Viewer

Length: 411 bp
atgtcgagttactggagtacaccgccaagcagtggacgattagttgccatttttgtaggattcgtagtcgtttttgtgaagatcacattattggttgcagtatgcaggaaaaggaatcagagtaggatttctgataaaccaagttttctcactctcacaatggacaaatttctgaatgacatggaaaggagaaagcccatcagatttacttctcaacaacttcggattgcaactgataacttcaccaacttgctcggatcaggagggtttggtgcagtttataaaggaatatttagtaatggaaccctcgtggcagtgaaggttctaaatggtacctctgatcaatgttttaaaaggctgaggcgtagccgggagagccttagcaaggcgcttgccttgaggtgtaattag

Protein Analysis

136

Amino Acids

15.22

Weight (kDa)

10.97

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 32
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 19, 334
AfiI CCNNNNNNNGG 2 cut(s) 32, 385
AlwI GGATC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 167
Asp718I GGTACC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 1 cut(s) 235
BanI GGYRCC 1 cut(s) 332
BauI CACGAG 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 359
BccI CCATC 1 cut(s) 206
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 371
BfoI RGCGCY 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 371
BmiI GGNNCC 2 cut(s) 304, 334
BmrFI CCNGG 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 359, 380
BpuMI CCSGG 1 cut(s) 371
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 385
Bse1I ACTGG 1 cut(s) 17
BseLI CCNNNNNNNGG 2 cut(s) 32, 385
BseMII CTCAG 1 cut(s) 350
BseNI ACTGG 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 32, 385
Bsp143I GATC 3 cut(s) 81, 257, 340
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 304, 334
BspPI GGATC 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 17
BssMI GATC 3 cut(s) 81, 257, 340
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 359, 380
BstENI CCTNNNNNAGG 1 cut(s) 383
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 84, 260, 343
BstMBI GATC 3 cut(s) 81, 257, 340
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 369
BtsI GCAGTG 2 cut(s) 37, 321
BtsIMutI CAGTG 2 cut(s) 37, 321
Cac8I GCNNGC 1 cut(s) 393
CfoI GCGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 18, 333
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 196, 358, 369, 378
CviKI_1 RGCY 4 cut(s) 196, 358, 369, 378
CviQI GTAC 2 cut(s) 18, 333
DdeI CTNAG 2 cut(s) 359, 380
DpnI GATC 3 cut(s) 83, 259, 342
DpnII GATC 3 cut(s) 81, 257, 340
DraI TTTAAA 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 383
FaeI CATG 1 cut(s) 184
FaiI YATR 3 cut(s) 103, 182, 282
FatI CATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 340
GlaI GCGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 392
HapII CCGG 1 cut(s) 370
HhaI GCGC 1 cut(s) 391
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 2 cut(s) 60, 115
HpaII CCGG 1 cut(s) 370
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 20, 35
Hpy188I TCNGA 7 cut(s) 120, 133, 174, 203, 225, 257, 340
Hpy188III TCNNGA 1 cut(s) 261
Hpy8I GTNNAC 2 cut(s) 20, 35
HpyAV CCTTC 1 cut(s) 313
HpyCH4V TGCA 4 cut(s) 98, 105, 230, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 2 cut(s) 359, 380
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 389
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 81, 257, 340
LpnPI CCDG 3 cut(s) 91, 246, 383
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 83, 259, 342
MboI GATC 3 cut(s) 81, 257, 340
MboII GAAGA 1 cut(s) 91
MluCI AATT 2 cut(s) 167, 406
MnlI CCTC 5 cut(s) 257, 317, 346, 354, 393
MseI TTAA 1 cut(s) 351
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 1 cut(s) 371
NdeII GATC 3 cut(s) 81, 257, 340
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 304, 334
PfeI GAWTC 2 cut(s) 60, 115
PflMI CCANNNNNTGG 1 cut(s) 32
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 304, 334
RsaI GTAC 2 cut(s) 19, 334
RsaNI GTAC 2 cut(s) 18, 333
SaqAI TTAA 1 cut(s) 351
Sau3AI GATC 3 cut(s) 81, 257, 340
ScrFI CCNGG 1 cut(s) 371
SetI ASST 3 cut(s) 324, 338, 404
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 2 cut(s) 167, 406
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 369
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 167, 406
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 60, 115
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 2 cut(s) 37, 321
TspRI CASTG 2 cut(s) 37, 321
Van91I CCANNNNNTGG 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.