Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012283.1

Orthogroup ID

OG0000690

Physical Location & Seq

Genomic Coordinates Forward (+)

2775 .. 5521

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012283.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgccaaataaacttgatcatcgagctcgatggtgtatcagctcccttcacaatgatgagctcttactagggttcagcaatgttattccggcgttgttgttgggccaaacggattcgaaggtgatgccggccgatgcttttgcttatttgtctgttgaaaacaccacccaagacaatgcacccaaggctttgcgtgggcagattcgcaagtgtaatttgactgagtctcgattggctggtgttattctcgcagaggtgcggcaatgggatctattcactaaaggggcaggcaatgggatcctccgtatgctctttgctctcaagtttgtcatccttaattccaatgccattgacgttcgcagattggatcaagtttgttactttatggaaagagagaagcccatcaggtttacttctcagcaaatttggattgcaactgagaacttcaccaacttcttgggttcaggagggtttggttcagtttataaaggtgtatttagtaatggaacgcttgtggcagtgaaggttctaaggggtacctcagacaagagaattcatgagcaattcatggcggaagttagtacacttggcaggattcatcatgtcaacttggttcgtctccatggtttctgctttgagagacacctcggagcgcttgtttatgagtatatgtcaaatggttcgcttgacaagtttcttttccatggaaacaagatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

239

Amino Acids

26.95

Weight (kDa)

9.36

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000690)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g07910
malus_domestica	MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica	Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis	pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis	RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata	RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora	Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii	Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa	Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha	Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana	Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	536
AccB1I	GGYRCC	1 cut(s)	536
AciI	CCGC	2 cut(s)	259, 572
AclWI	GGATC	4 cut(s)	276, 292, 305, 375
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	423, 552
AfaI	GTAC	2 cut(s)	538, 583
AfeI	AGCGCT	1 cut(s)	654
AgsI	TTSAA	1 cut(s)	158
AluBI	AGCT	3 cut(s)	26, 42, 61
AluI	AGCT	3 cut(s)	26, 42, 61
Alw21I	GWGCWC	2 cut(s)	28, 63
Alw26I	GTCTC	3 cut(s)	231, 623, 634
AlwI	GGATC	4 cut(s)	276, 292, 305, 375
Aor51HI	AGCGCT	1 cut(s)	654
AoxI	GGCC	2 cut(s)	103, 129
ApoI	RAATTY	2 cut(s)	423, 552
Asp718I	GGTACC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	2 cut(s)	133, 439
AsuII	TTCGAA	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	297
BanI	GGYRCC	1 cut(s)	536
BanII	GRGCYC	2 cut(s)	28, 63
Bbv12I	GWGCWC	2 cut(s)	28, 63
BccI	CCATC	2 cut(s)	24, 410
BcgI	CGANNNNNNTGC	4 cut(s)	106, 122, 140, 156
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	231, 623, 634
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	656
BisI	GCNGC	1 cut(s)	260
BlsI	GCNGC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	299, 538
BmsI	GCATC	2 cut(s)	114, 124
Bpu14I	TTCGAA	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	305
BsaJI	CCNNGG	4 cut(s)	183, 622, 646, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bse118I	RCCGGY	1 cut(s)	127
Bse3DI	GCAATG	3 cut(s)	85, 269, 298
BseDI	CCNNGG	4 cut(s)	183, 622, 646, 703
BseGI	GGATG	1 cut(s)	330
BseMI	GCAATG	3 cut(s)	85, 269, 298
BseMII	CTCAG	4 cut(s)	213, 429, 431, 555
BseX3I	CGGCCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	105, 131
BshNI	GGYRCC	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	28, 63
BsiSI	CCGG	2 cut(s)	89, 128
BsmAI	GTCTC	3 cut(s)	231, 623, 634
BsmBI	CGTCTC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	105, 131
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	28, 63
Bsp143I	GATC	4 cut(s)	16, 268, 297, 367
Bsp19I	CCATGG	2 cut(s)	622, 703
BspACI	CCGC	2 cut(s)	259, 572
BspANI	GGCC	2 cut(s)	105, 131
BspCNI	CTCAG	4 cut(s)	214, 430, 430, 554
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	299, 538
BspPI	GGATC	4 cut(s)	276, 292, 305, 375
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	3 cut(s)	85, 269, 298
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	4 cut(s)	183, 622, 646, 703
BssMI	GATC	4 cut(s)	16, 268, 297, 367
BssT1I	CCWWGG	3 cut(s)	183, 622, 703
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	129, 289
BstDEI	CTNAG	5 cut(s)	222, 417, 438, 530, 541
BstDSI	CCRYGG	2 cut(s)	622, 703
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	4 cut(s)	19, 271, 300, 370
BstMAI	GTCTC	3 cut(s)	231, 623, 634
BstMBI	GATC	4 cut(s)	16, 268, 297, 367
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstX2I	RGATCY	2 cut(s)	268, 297
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	2 cut(s)	268, 297
BstZI	CGGCCG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	105, 131
BtgI	CCRYGG	2 cut(s)	622, 703
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	129, 289
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	537, 582
CviAII	CATG	5 cut(s)	557, 568, 602, 623, 704
CviJI	RGCY	8 cut(s)	26, 42, 61, 105, 131, 188, 236, 400
CviKI_1	RGCY	8 cut(s)	26, 42, 61, 105, 131, 188, 236, 400
CviQI	GTAC	2 cut(s)	537, 582
DdeI	CTNAG	5 cut(s)	222, 417, 438, 530, 541
DpnI	GATC	4 cut(s)	18, 270, 299, 369
DpnII	GATC	4 cut(s)	16, 268, 297, 367
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	587
Ecl136II	GAGCTC	2 cut(s)	26, 61
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	3 cut(s)	183, 622, 703
Eco24I	GRGCYC	2 cut(s)	28, 63
Eco47III	AGCGCT	1 cut(s)	654
Eco52I	CGGCCG	1 cut(s)	129
Eco53kI	GAGCTC	2 cut(s)	26, 61
EcoICRI	GAGCTC	2 cut(s)	26, 61
EcoRI	GAATTC	1 cut(s)	552
EcoT14I	CCWWGG	3 cut(s)	183, 622, 703
EcoT38I	GRGCYC	2 cut(s)	28, 63
ErhI	CCWWGG	3 cut(s)	183, 622, 703
Esp3I	CGTCTC	1 cut(s)	623
FaeI	CATG	5 cut(s)	560, 571, 605, 626, 707
FatI	CATG	5 cut(s)	556, 567, 601, 622, 703
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	260
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	28, 63
Fsp4HI	GCNGC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	260
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	105, 131
HapII	CCGG	2 cut(s)	89, 128
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	5 cut(s)	560, 571, 605, 626, 707
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	113, 202, 224, 595
HpaII	CCGG	2 cut(s)	89, 128
HphI	GGTGA	2 cut(s)	133, 439
Hpy166II	GTNNAC	3 cut(s)	411, 584, 607
Hpy188I	TCNGA	2 cut(s)	544, 650
Hpy188III	TCNNGA	3 cut(s)	228, 465, 557
Hpy8I	GTNNAC	3 cut(s)	411, 584, 607
HpyAV	CCTTC	3 cut(s)	56, 112, 517
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	179, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	5 cut(s)	222, 417, 438, 530, 541
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	560, 571, 605, 626, 707
HspAI	GCGC	1 cut(s)	653
KpnI	GGTACC	1 cut(s)	540
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 268, 297, 367
LmnI	GCTCC	2 cut(s)	47, 650
LpnPI	CCDG	7 cut(s)	102, 141, 222, 273, 391, 450, 577
LweI	GCATC	2 cut(s)	114, 124
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	4 cut(s)	18, 270, 299, 369
MboI	GATC	4 cut(s)	16, 268, 297, 367
MflI	RGATCY	2 cut(s)	268, 297
MhlI	GDGCHC	2 cut(s)	28, 63
MluCI	AATT	5 cut(s)	214, 337, 423, 552, 563
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	247, 311, 461, 550, 656
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	54
MspI	CCGG	2 cut(s)	89, 128
MwoI	GCNNNNNNNGC	1 cut(s)	185
NaeI	GCCGGC	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	622, 703
NdeII	GATC	4 cut(s)	16, 268, 297, 367
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	5 cut(s)	560, 571, 605, 626, 707
NlaIV	GGNNCC	2 cut(s)	299, 538
NspV	TTCGAA	1 cut(s)	116
PagI	TCATGA	1 cut(s)	556
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	113, 202, 595
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	261
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	28, 63
PspN4I	GGNNCC	2 cut(s)	299, 538
PspPI	GGNCC	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	268, 297
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	538, 583
RsaNI	GTAC	2 cut(s)	537, 582
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	2 cut(s)	28, 63
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	260
Sau3AI	GATC	4 cut(s)	16, 268, 297, 367
Sau96I	GGNCC	1 cut(s)	103
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	28, 63
SfaNI	GCATC	2 cut(s)	114, 124
SfuI	TTCGAA	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	214, 337, 423, 552, 563
SsiI	CCGC	2 cut(s)	259, 572
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	2 cut(s)	28, 63
StyI	CCWWGG	3 cut(s)	183, 622, 703
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	4 cut(s)	22, 28, 116, 229
TasI	AATT	5 cut(s)	214, 337, 423, 552, 563
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	113, 202, 595
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	525
TspDTI	ATGAA	3 cut(s)	545, 556, 587
TspGWI	ACGGA	2 cut(s)	125, 293
TspRI	CASTG	1 cut(s)	525
Tth111I	GACNNNGTC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	423, 552
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.