Rorug04G0030700
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
4432550 .. 4433991
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0030700.1

Sequence Viewer

Length: 795 bp
ATGGGAAGAAACTCTGGTTTCGAAAAGGAGGGATTGAAGAGAGGCATGTGGTCTGCTCGCGAAGACCAGGTTCTCAAGGACTACGTCAAAAAGCACGGTCCAGGCAAATGGGGAAAAACAGCAAGGGAGACTGGTCTGAAGAGATGTGGGAAGAGTGTGAGACTGAGATGGTTGAATTATCTGAGGCCCGGTATCAAGAAAGGCAACATTACAGAAGAAGAAGAAGACCTTATCATCAGGATGCACAAACTTGTAGGCAACAGGTGGTCATTGATAGCAGGAAGGATACCGGGCCGAACTGACAATGAGATAAAGAACTACTGGAATTCCACTCTAAGGAAGAAGCTGGTAGGTGAAAAAGAAAAGGAGAACATGCCATCCCCCGTTGAGGACGATGGTCATCAATATTTAACCAAATGCGATGAAGTTCATGGAGGAGTAGGAGGAGGAGGATTGATATGTTTTGCCAGTAATATTGTTAATGTAGAAGAAGATCATCAGCATCGTTGTCTTGGCGGTACTAGTACCGATACTACTACACTGAGTCTCGGAGTGGAACTCGGAATCGGAGGCGGGGCAAACAATGATATTCAACCAACTGGGAATGATCTCAATTATAACGCTATGACCTGGAACGATTCGATAATGGATCTAAGTGGAGGCCAACTCGACATATCTGAATTTCTCCAAACTGACTTTTTGAATTTTTGGGAAGAAACAGATAGGTTCATGAATTTTGAAGTGGGAGGTTGCAGCACCATTAATCATGAGTTGCCAAATAATTGGGATGGTTAA

Protein Analysis

264

Amino Acids

29.59

Weight (kDa)

5.71

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.9e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 2.5e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 7.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 115 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g07910
malus_domestica MD10G1181800.v1.1 MD10G1181900.v1.1 MD13G1249800.v1.1 MD13G1250100.v1.1 MD13G1250500.v1.1 MD13G1250700.v1.1 MD13G1250900.v1.1 MD13G1251000.v1.1 MD16G1220300.v1.1
prunus_persica Prupe.1G082900_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083000_v2.0.a1 Prupe.1G083100_v2.0.a1 Prupe.1G083300_v2.0.a1
pyrus_communis pycom16g18410 pycom16g18420 pycom16g18430
rosa_chinensis RchiOBHm_Chr4g0401211 RchiOBHm_Chr4g0401231 RchiOBHm_Chr4g0401251 RchiOBHm_Chr4g0401331 RchiOBHm_Chr4g0401351 RchiOBHm_Chr4g0401361 RchiOBHm_Chr4g0401381 RchiOBHm_Chr4g0401471 RchiOBHm_Chr4g0401481 RchiOBHm_Chr4g0401501 RchiOBHm_Chr4g0401511 RchiOBHm_Chr4g0401631 RchiOBHm_Chr4g0401651
rosa_laevigata RLG00000009145 RLG00000009146 RLG00000009148 RLG00000009149 RLG00000009151 RLG00000009154 RLG00000009155
rosa_multiflora Rmu_sc0001524.1_g000025 Rmu_sc0001524.1_g000067 Rmu_sc0003623.1_g000001 Rmu_sc0003623.1_g000027 Rmu_sc0004622.1_g000009 Rmu_sc0004622.1_g000013 Rmu_sc0004622.1_g000018 Rmu_sc0005229.1_g000007 Rmu_sc0005229.1_g000012 Rmu_sc0006444.1_g000002 Rmu_sc0006444.1_g000006 Rmu_sc0012283.1_g000002 Rmu_sc0012283.1_g000003 Rmu_sc0042918.1_g000001
rosa_roxburghii Rroxscaffold_2G00117770 Rroxscaffold_5G00346060 Rroxscaffold_5G00346100 Rroxscaffold_5G00346110 Rroxscaffold_5G00346130 Rroxscaffold_5G00360510
rosa_rugosa Rorug04G0029000 Rorug04G0029200 Rorug04G0029300 Rorug04G0029500 Rorug04G0029600 Rorug04G0030700 Rorug04G0030900
rosa_samantha Rh4AG107600 Rh4BG101300 Rh4CG115900
rosa_wichuraiana Rw4G008620 Rw4G008630 Rw4G008650 Rw4G008660 Rw4G008680 Rw4G008710 Rw4G008730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccII CGCG 1 cut(s) 60
AciI CCGC 2 cut(s) 516, 573
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 4 cut(s) 325, 680, 703, 733
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 520, 526
AfiI CCNNNNNNNGG 2 cut(s) 336, 388
AgsI TTSAA 5 cut(s) 37, 175, 593, 703, 740
AhlI ACTAGT 1 cut(s) 521
AjnI CCWGG 3 cut(s) 66, 100, 629
AloI GAACNNNNNNTCC 2 cut(s) 362, 394
AluBI AGCT 1 cut(s) 346
AluI AGCT 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 122, 154, 551
AlwI GGATC 1 cut(s) 657
AoxI GGCC 3 cut(s) 185, 292, 661
ApeKI GCWGC 1 cut(s) 753
ApoI RAATTY 4 cut(s) 325, 680, 703, 733
AseI ATTAAT 1 cut(s) 762
AspS9I GGNCC 3 cut(s) 98, 186, 292
AsuC2I CCSGG 2 cut(s) 189, 291
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 69, 231
BbvI GCAGC 1 cut(s) 765
BccI CCATC 4 cut(s) 162, 385, 389, 782
BciT130I CCWGG 3 cut(s) 68, 102, 631
BciVI GTATCC 1 cut(s) 279
BcnI CCSGG 2 cut(s) 189, 291
BcoDI GTCTC 3 cut(s) 122, 154, 551
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 1 cut(s) 522
BfuI GTATCC 1 cut(s) 279
BisI GCNGC 1 cut(s) 754
BlsI GCNGC 1 cut(s) 755
Bme1390I CCNGG 5 cut(s) 68, 102, 189, 291, 631
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 98, 186, 292
BmrFI CCNGG 5 cut(s) 68, 102, 189, 291, 631
BmrI ACTGGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 231, 511
BmuI ACTGGG 1 cut(s) 609
BoxI GACNNNNGTC 1 cut(s) 396
BpiI GAAGAC 2 cut(s) 69, 231
BplI GAGNNNNNCTC 4 cut(s) 543, 575, 651, 683
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 2 cut(s) 189, 291
BsaBI GATNNNNATC 1 cut(s) 399
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 388
Bse1I ACTGG 4 cut(s) 136, 326, 468, 604
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 3 cut(s) 68, 102, 631
BseGI GGATG 3 cut(s) 246, 377, 793
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 2 cut(s) 336, 388
BseMII CTCAG 3 cut(s) 155, 173, 533
BseNI ACTGG 4 cut(s) 136, 326, 468, 604
BseRI GAGGAG 3 cut(s) 450, 459, 462
BseXI GCAGC 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 187, 294, 663
BsiSI CCGG 2 cut(s) 189, 290
BslI CCNNNNNNNGG 2 cut(s) 336, 388
BsmAI GTCTC 3 cut(s) 122, 154, 551
BsnI GGCC 3 cut(s) 187, 294, 663
Bsp119I TTCGAA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 493, 607, 649
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 2 cut(s) 516, 573
BspANI GGCC 3 cut(s) 187, 294, 663
BspCNI CTCAG 3 cut(s) 156, 174, 534
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 2 cut(s) 729, 766
BspPI GGATC 1 cut(s) 657
BspT104I TTCGAA 1 cut(s) 21
BsrI ACTGG 4 cut(s) 136, 326, 468, 604
BssMI GATC 3 cut(s) 493, 607, 649
Bst2UI CCWGG 3 cut(s) 68, 102, 631
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 3 cut(s) 32, 134, 146
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 164, 182, 335, 542, 653
BstF5I GGATG 3 cut(s) 246, 377, 793
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 3 cut(s) 496, 610, 652
BstMAI GTCTC 3 cut(s) 122, 154, 551
BstMBI GATC 3 cut(s) 493, 607, 649
BstNI CCWGG 3 cut(s) 68, 102, 631
BstNSI RCATGY 2 cut(s) 49, 376
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 5 cut(s) 66, 100, 187, 289, 629
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 765
BstV2I GAAGAC 2 cut(s) 69, 231
BstX2I RGATCY 1 cut(s) 649
BstXI CCANNNNNNTGG 2 cut(s) 108, 783
BstYI RGATCY 1 cut(s) 649
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 3 cut(s) 187, 294, 663
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 246, 377, 793
BtsIMutI CAGTG 1 cut(s) 539
BtuMI TCGCGA 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 58
CciI TCATGA 2 cut(s) 729, 766
Cfr13I GGNCC 3 cut(s) 98, 186, 292
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 2 cut(s) 519, 525
CviAII CATG 5 cut(s) 46, 373, 431, 730, 767
CviJI RGCY 4 cut(s) 187, 294, 346, 663
CviKI_1 RGCY 4 cut(s) 187, 294, 346, 663
CviQI GTAC 2 cut(s) 519, 525
DdeI CTNAG 5 cut(s) 164, 182, 335, 542, 653
DpnI GATC 3 cut(s) 495, 609, 651
DpnII GATC 3 cut(s) 493, 607, 649
Eam1104I CTCTTC 3 cut(s) 32, 134, 146
EarI CTCTTC 3 cut(s) 32, 134, 146
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 66, 100, 629
FaeI CATG 5 cut(s) 49, 376, 434, 733, 770
FaiI YATR 9 cut(s) 47, 374, 432, 460, 618, 626, 674, 731, 768
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 5 cut(s) 45, 372, 430, 729, 766
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 1 cut(s) 754
FokI GGATG 2 cut(s) 253, 364
Fsp4HI GCNGC 1 cut(s) 754
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 754
HaeIII GGCC 3 cut(s) 187, 294, 663
HapII CCGG 2 cut(s) 189, 290
Hin1II CATG 5 cut(s) 49, 376, 434, 733, 770
HinfI GANTC 3 cut(s) 544, 564, 638
HpaII CCGG 2 cut(s) 189, 290
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 6 cut(s) 138, 183, 551, 563, 569, 679
Hpy188III TCNNGA 5 cut(s) 59, 196, 238, 730, 767
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 2 cut(s) 244, 753
HpyF3I CTNAG 5 cut(s) 164, 182, 335, 542, 653
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 5 cut(s) 49, 376, 434, 733, 770
Kzo9I GATC 3 cut(s) 493, 607, 649
Lsp1109I GCAGC 1 cut(s) 765
LweI GCATC 2 cut(s) 231, 511
MabI ACCWGGT 1 cut(s) 66
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 84
MalI GATC 3 cut(s) 495, 609, 651
MboI GATC 3 cut(s) 493, 607, 649
MflI RGATCY 1 cut(s) 649
MluCI AATT 7 cut(s) 175, 325, 613, 680, 703, 733, 781
MlyI GAGTC 1 cut(s) 553
MseI TTAA 4 cut(s) 410, 480, 762, 793
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 2 cut(s) 189, 290
MspR9I CCNGG 5 cut(s) 68, 102, 189, 291, 631
MvaI CCWGG 3 cut(s) 68, 102, 631
MvnI CGCG 1 cut(s) 60
NciI CCSGG 2 cut(s) 189, 291
NdeII GATC 3 cut(s) 493, 607, 649
NlaIII CATG 5 cut(s) 49, 376, 434, 733, 770
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 2 cut(s) 49, 376
NspV TTCGAA 1 cut(s) 21
PagI TCATGA 2 cut(s) 729, 766
PfeI GAWTC 2 cut(s) 564, 638
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 755
PleI GAGTC 1 cut(s) 552
PpsI GAGTC 1 cut(s) 552
PshAI GACNNNNGTC 1 cut(s) 396
PshBI ATTAAT 1 cut(s) 762
PsiI TTATAA 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 66, 100, 629
PspGI CCWGG 3 cut(s) 66, 100, 629
PspPI GGNCC 3 cut(s) 98, 186, 292
PsuI RGATCY 1 cut(s) 649
PsyI GACNNNGTC 1 cut(s) 83
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 520, 526
RsaNI GTAC 2 cut(s) 519, 525
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 4 cut(s) 410, 480, 762, 793
SatI GCNGC 1 cut(s) 754
Sau3AI GATC 3 cut(s) 493, 607, 649
Sau96I GGNCC 3 cut(s) 98, 186, 292
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 5 cut(s) 68, 102, 189, 291, 631
SetI ASST 9 cut(s) 72, 87, 231, 266, 348, 355, 632, 728, 751
SexAI ACCWGGT 1 cut(s) 66
SfaNI GCATC 2 cut(s) 231, 511
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SpeI ACTAGT 1 cut(s) 521
Sse9I AATT 7 cut(s) 175, 325, 613, 680, 703, 733, 781
SsiI CCGC 2 cut(s) 516, 573
SspI AATATT 2 cut(s) 407, 475
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 5 cut(s) 66, 100, 187, 289, 629
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 21, 641, 669
TasI AATT 7 cut(s) 175, 325, 613, 680, 703, 733, 781
TfiI GAWTC 2 cut(s) 564, 638
Tru1I TTAA 4 cut(s) 410, 480, 762, 793
Tru9I TTAA 4 cut(s) 410, 480, 762, 793
TscAI CASTG 1 cut(s) 546
TseI GCWGC 1 cut(s) 753
TspDTI ATGAA 4 cut(s) 419, 438, 718, 746
TspRI CASTG 1 cut(s) 546
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 762
XapI RAATTY 4 cut(s) 325, 680, 703, 733
XceI RCATGY 2 cut(s) 49, 376
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.